MD03G1240700.v1.1

protein At3g15000, mitochondrial-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
32589153 .. 32592231
3079 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1240700.v1.1.491

Sequence Viewer

Length: 1170 bp
ATGGCGACCCATTTCTTCTCTCGCTCGATTCCCAAGTCCCAAGCCATGGCTTCATTTCTCTCTCGCTCCCTCTCCACCGCCACCTCCGCCACTTCCCTATCCACCGCCGCCCAATCTCGTTCTTCTTCGCTCTCTCTCCTCCACCGCCTCCGCCCTCTTGCCGGAGTCATGGCCTCCGCCGGCAGGCTCTCCCCTGCGATCGCCCGGTGCTTGTCGACCAGATCGACGACGTCATCGCTCAGGGACCCGAACCCTAACTGGTCGAACCGGCCTCCCAAGGAGACGATCCTCCTCGACGGGTGTGACTTCGAGCACTGGTTGGTTGTCATGGAGGCCCCTCAGGGTGATATCACTAGGGATGAGATCATCAATAGCTACATCAAAACCCTAGCTACCGTCGTCGGAAGTGAGGAAGAAGCAAGAATGAAGATCTACTCAGTTTCAACTAGGTGCTATTATGCGTTTGGGGCACTTGTATCTGAAGAGGTTTCACTCAAAATCAAAGAGTTGCCTGGAGTCCGTTGGGTACTTCCTGATTCCTACTTGGATGTTAAGAACAAAGATTATGGAGGTGAACCTTTTATTAATGGCCAAGCAGTGCCATATGATCCCAAGTACCATGAGGAATGGATAAGAAACAATAGTCGAGCAAATGAGAGAAACAGGCGTAATGACAGACCTCGTAACTTTGACAGATCAAGGAACTTTGAAAGGAGAAGGGAAAATATGCAGAATCGTGATTTTCAGAATACGGGTCCATCTCCTATGCCTAATCAAGCTGGGCCAAATTCGGGACCTGGACCTGCCAACATGGGTCCTCCACCCCCCAACAGGGGTCCAATGCAGCCTCCCAACATGGGTCCTCCACCCCCGAACAGGGCTCCAATGCCGCCTCCCAACATGGGTCCACCAAACAACTACAATAATCCCCAGCCAAGCAACAACTGGAATTCTGGGCCACCGAACAGCTATAATCAGGTGCCTCCCAACAGCTACAATCAGATGCCGCCCAACAACTACAATCAGATGCCTCCCAATAACCCGGGAGGGGTGCCACCAAACAACATGGCTCCACCTTCTAATGCAGGATGGAATGATCCTGGACAATACCAGAATAACTACACGCCAGACAGGGATGCTGGAGTCAATCCTGGTCCAAACCGTTACTAA

Protein Analysis

390

Amino Acids

43.14

Weight (kDa)

9.49

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 103 - 194 1e-38 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 811
AccB1I GGYRCC 2 cut(s) 979, 1051
AccB7I CCANNNNNTGG 1 cut(s) 46
AccI GTMKAC 1 cut(s) 215
AciI CCGC 9 cut(s) 78, 87, 105, 108, 145, 151, 177, 890, 1007
AclWI GGATC 3 cut(s) 280, 602, 1091
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 2 cut(s) 787, 949
AcuI CTGAAG 1 cut(s) 501
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 2 cut(s) 528, 617
AgsI TTSAA 2 cut(s) 444, 710
AjnI CCWGG 4 cut(s) 511, 796, 1099, 1150
AluBI AGCT 5 cut(s) 375, 392, 779, 969, 993
AluI AGCT 5 cut(s) 375, 392, 779, 969, 993
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 3 cut(s) 280, 602, 1091
Ama87I CYCGRG 1 cut(s) 1042
AoxI GGCC 6 cut(s) 171, 269, 333, 589, 782, 956
ApeKI GCWGC 1 cut(s) 844
ApoI RAATTY 2 cut(s) 787, 949
AseI ATTAAT 1 cut(s) 585
AsiSI GCGATCGC 1 cut(s) 201
AsuC2I CCSGG 3 cut(s) 205, 1043, 1044
AsuHPI GGTGA 2 cut(s) 356, 584
AvaI CYCGRG 1 cut(s) 1042
AvaII GGWCC 9 cut(s) 244, 755, 794, 800, 815, 836, 860, 905, 1154
AxyI CCTNAGG 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 472
BalI TGGCCA 1 cut(s) 591
BanI GGYRCC 2 cut(s) 979, 1051
BanII GRGCYC 1 cut(s) 883
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 856
BccI CCATC 2 cut(s) 766, 1083
BciT130I CCWGG 4 cut(s) 513, 798, 1101, 1152
BcnI CCSGG 3 cut(s) 205, 1043, 1044
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 3 cut(s) 354, 389, 447
BfuAI ACCTGC 1 cut(s) 811
BglII AGATCT 1 cut(s) 429
BisI GCNGC 4 cut(s) 108, 845, 890, 1007
BlsI GCNGC 4 cut(s) 109, 846, 891, 1008
Bme1390I CCNGG 7 cut(s) 205, 513, 798, 1043, 1044, 1101, 1152
Bme18I GGWCC 9 cut(s) 244, 755, 794, 800, 815, 836, 860, 905, 1154
BmeT110I CYCGRG 1 cut(s) 1042
BmrFI CCNGG 7 cut(s) 205, 513, 798, 1043, 1044, 1101, 1152
BmsI GCATC 3 cut(s) 993, 1017, 1126
BpmI CTGGAG 2 cut(s) 534, 1161
Bpu10I CCTNAGC 1 cut(s) 239
BpuMI CCSGG 3 cut(s) 205, 1043, 1044
BsaHI GRCGYC 1 cut(s) 230
BsaJI CCNNGG 3 cut(s) 45, 276, 1042
Bse118I RCCGGY 2 cut(s) 179, 267
Bse1I ACTGG 3 cut(s) 263, 320, 950
Bse21I CCTNAGG 1 cut(s) 339
BseBI CCWGG 4 cut(s) 513, 798, 1101, 1152
BseDI CCNNGG 3 cut(s) 45, 276, 1042
BseGI GGATG 4 cut(s) 364, 553, 1094, 1141
BseMII CTCAG 3 cut(s) 253, 353, 450
BseNI ACTGG 3 cut(s) 263, 320, 950
BseRI GAGGAG 2 cut(s) 128, 281
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 1 cut(s) 856
BseYI CCCAGC 2 cut(s) 779, 930
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 6 cut(s) 173, 271, 335, 591, 784, 958
BshNI GGYRCC 2 cut(s) 979, 1051
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 1042
BsiSI CCGG 5 cut(s) 162, 180, 205, 268, 1043
BslFI GGGAC 3 cut(s) 22, 257, 807
BsmAI GTCTC 1 cut(s) 275
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 3 cut(s) 22, 257, 807
BsnI GGCC 6 cut(s) 173, 271, 335, 591, 784, 958
BsoBI CYCGRG 1 cut(s) 1042
Bsp1286I GDGCHC 3 cut(s) 315, 472, 883
Bsp143I GATC 8 cut(s) 198, 221, 285, 363, 429, 607, 695, 1096
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 9 cut(s) 78, 87, 105, 108, 145, 151, 177, 890, 1007
BspANI GGCC 6 cut(s) 173, 271, 335, 591, 784, 958
BspCNI CTCAG 3 cut(s) 252, 352, 449
BspMI ACCTGC 1 cut(s) 811
BspPI GGATC 3 cut(s) 280, 602, 1091
BspT107I GGYRCC 2 cut(s) 979, 1051
BsrFI RCCGGY 2 cut(s) 179, 267
BsrI ACTGG 3 cut(s) 263, 320, 950
BssAI RCCGGY 2 cut(s) 179, 267
BssECI CCNNGG 3 cut(s) 45, 276, 1042
BssMI GATC 8 cut(s) 198, 221, 285, 363, 429, 607, 695, 1096
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 2 cut(s) 45, 276
Bst2UI CCWGG 4 cut(s) 513, 798, 1101, 1152
Bst4CI ACNGT 2 cut(s) 397, 1163
Bst6I CTCTTC 1 cut(s) 477
BstACI GRCGYC 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 181, 185
BstDEI CTNAG 3 cut(s) 239, 339, 436
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 4 cut(s) 364, 553, 1094, 1141
BstKTI GATC 8 cut(s) 201, 224, 288, 366, 432, 610, 698, 1099
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 8 cut(s) 198, 221, 285, 363, 429, 607, 695, 1096
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 86, 467
BstNI CCWGG 4 cut(s) 513, 798, 1101, 1152
BstSCI CCNGG 7 cut(s) 203, 511, 796, 1041, 1042, 1099, 1150
BstSLI GKGCMC 1 cut(s) 472
BstV1I GCAGC 1 cut(s) 856
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
Bsu36I CCTNAGG 1 cut(s) 339
BsuRI GGCC 6 cut(s) 173, 271, 335, 591, 784, 958
BtgI CCRYGG 1 cut(s) 45
BtgZI GCGATG 1 cut(s) 219
BtsCI GGATG 4 cut(s) 364, 553, 1094, 1141
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 2 cut(s) 313, 603
BveI ACCTGC 1 cut(s) 811
Cac8I GCNNGC 2 cut(s) 181, 185
Cfr10I RCCGGY 2 cut(s) 179, 267
Cfr9I CCCGGG 1 cut(s) 1042
Csp6I GTAC 2 cut(s) 527, 616
CviAII CATG 8 cut(s) 46, 169, 328, 620, 811, 856, 901, 1066
CviQI GTAC 2 cut(s) 527, 616
DdeI CTNAG 3 cut(s) 239, 339, 436
DpnI GATC 8 cut(s) 200, 223, 287, 365, 431, 609, 697, 1098
DpnII GATC 8 cut(s) 198, 221, 285, 363, 429, 607, 695, 1096
EaeI YGGCCR 1 cut(s) 589
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
EciI GGCGGA 3 cut(s) 76, 140, 166
Eco130I CCWWGG 2 cut(s) 45, 276
Eco24I GRGCYC 1 cut(s) 883
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 9 cut(s) 244, 755, 794, 800, 815, 836, 860, 905, 1154
Eco57I CTGAAG 1 cut(s) 501
Eco81I CCTNAGG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 1042
EcoO109I RGGNCCY 5 cut(s) 244, 334, 794, 815, 860
EcoRI GAATTC 1 cut(s) 949
EcoRII CCWGG 4 cut(s) 511, 796, 1099, 1150
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 45, 276
EcoT38I GRGCYC 1 cut(s) 883
ErhI CCWWGG 2 cut(s) 45, 276
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 8 cut(s) 49, 172, 331, 623, 814, 859, 904, 1069
FaqI GGGAC 3 cut(s) 22, 257, 807
FatI CATG 8 cut(s) 45, 168, 327, 619, 810, 855, 900, 1065
FauNDI CATATG 1 cut(s) 604
FblI GTMKAC 1 cut(s) 215
Fnu4HI GCNGC 4 cut(s) 108, 845, 890, 1007
FokI GGATG 4 cut(s) 371, 560, 1101, 1148
FriOI GRGCYC 1 cut(s) 883
Fsp4HI GCNGC 4 cut(s) 108, 845, 890, 1007
FspBI CTAG 3 cut(s) 354, 389, 447
GluI GCNGC 4 cut(s) 108, 845, 890, 1007
GsaI CCCAGC 2 cut(s) 783, 934
GsuI CTGGAG 2 cut(s) 534, 1161
HaeIII GGCC 6 cut(s) 173, 271, 335, 591, 784, 958
HapII CCGG 5 cut(s) 162, 180, 205, 268, 1043
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 8 cut(s) 49, 172, 331, 623, 814, 859, 904, 1069
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 6 cut(s) 28, 165, 516, 536, 733, 1143
HpaII CCGG 5 cut(s) 162, 180, 205, 268, 1043
HphI GGTGA 2 cut(s) 356, 584
Hpy166II GTNNAC 3 cut(s) 216, 575, 908
Hpy188I TCNGA 5 cut(s) 404, 481, 747, 1002, 1026
Hpy188III TCNNGA 3 cut(s) 533, 737, 792
Hpy8I GTNNAC 3 cut(s) 216, 575, 908
Hpy99I CGWCG 5 cut(s) 229, 232, 299, 401, 404
HpyAV CCTTC 2 cut(s) 711, 1086
HpyCH4III ACNGT 2 cut(s) 397, 1163
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 3 cut(s) 730, 844, 1085
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 467
HpyF3I CTNAG 3 cut(s) 239, 339, 436
HpySE526I ACGT 1 cut(s) 230
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 8 cut(s) 49, 172, 331, 623, 814, 859, 904, 1069
KflI GGGWCCC 1 cut(s) 244
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Kzo9I GATC 8 cut(s) 198, 221, 285, 363, 429, 607, 695, 1096
LmnI GCTCC 3 cut(s) 71, 886, 1075
Lsp1109I GCAGC 1 cut(s) 856
LweI GCATC 3 cut(s) 993, 1017, 1126
MaeI CTAG 3 cut(s) 354, 389, 447
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 3 cut(s) 302, 683, 1163
MalI GATC 8 cut(s) 200, 223, 287, 365, 431, 609, 697, 1098
MboI GATC 8 cut(s) 198, 221, 285, 363, 429, 607, 695, 1096
MboII GAAGA 6 cut(s) 7, 114, 117, 425, 439, 494
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 3 cut(s) 315, 472, 883
MlsI TGGCCA 1 cut(s) 591
MluCI AATT 2 cut(s) 787, 949
MluNI TGGCCA 1 cut(s) 591
MlyI GAGTC 3 cut(s) 174, 525, 1152
MmeI TCCRAC 1 cut(s) 382
Mox20I TGGCCA 1 cut(s) 591
MroNI GCCGGC 1 cut(s) 179
MscI TGGCCA 1 cut(s) 591
MseI TTAA 2 cut(s) 552, 585
Msp20I TGGCCA 1 cut(s) 591
MspI CCGG 5 cut(s) 162, 180, 205, 268, 1043
MspR9I CCNGG 7 cut(s) 205, 513, 798, 1043, 1044, 1101, 1152
MvaI CCWGG 4 cut(s) 513, 798, 1101, 1152
MwoI GCNNNNNNNGC 2 cut(s) 86, 467
NaeI GCCGGC 1 cut(s) 181
NciI CCSGG 3 cut(s) 205, 1043, 1044
NcoI CCATGG 1 cut(s) 45
NdeI CATATG 1 cut(s) 604
NdeII GATC 8 cut(s) 198, 221, 285, 363, 429, 607, 695, 1096
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 8 cut(s) 49, 172, 331, 623, 814, 859, 904, 1069
NmuCI GTSAC 1 cut(s) 302
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PdiI GCCGGC 1 cut(s) 181
PfeI GAWTC 3 cut(s) 28, 536, 733
PflFI GACNNNGTC 1 cut(s) 229
PflMI CCANNNNNTGG 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 1099
PkrI GCNGC 4 cut(s) 109, 846, 891, 1008
Ple19I CGATCG 1 cut(s) 201
PleI GAGTC 3 cut(s) 173, 524, 1151
PpsI GAGTC 3 cut(s) 173, 524, 1151
PpuMI RGGWCCY 4 cut(s) 244, 794, 815, 860
PshBI ATTAAT 1 cut(s) 585
Psp5II RGGWCCY 4 cut(s) 244, 794, 815, 860
Psp6I CCWGG 4 cut(s) 511, 796, 1099, 1150
PspFI CCCAGC 2 cut(s) 779, 930
PspGI CCWGG 4 cut(s) 511, 796, 1099, 1150
PspPPI RGGWCCY 4 cut(s) 244, 794, 815, 860
PsuI RGATCY 1 cut(s) 429
PsyI GACNNNGTC 1 cut(s) 229
PvuI CGATCG 1 cut(s) 201
RgaI GCGATCGC 1 cut(s) 201
RsaI GTAC 2 cut(s) 528, 617
RsaNI GTAC 2 cut(s) 527, 616
SalI GTCGAC 1 cut(s) 214
SaqAI TTAA 2 cut(s) 552, 585
SatI GCNGC 4 cut(s) 108, 845, 890, 1007
Sau3AI GATC 8 cut(s) 198, 221, 285, 363, 429, 607, 695, 1096
SchI GAGTC 3 cut(s) 174, 525, 1152
ScrFI CCNGG 7 cut(s) 205, 513, 798, 1043, 1044, 1101, 1152
SduI GDGCHC 3 cut(s) 315, 472, 883
SfaAI GCGATCGC 1 cut(s) 201
SfaNI GCATC 3 cut(s) 993, 1017, 1126
SgfI GCGATCGC 1 cut(s) 201
SinI GGWCC 9 cut(s) 244, 755, 794, 800, 815, 836, 860, 905, 1154
SmaI CCCGGG 1 cut(s) 1044
Sse9I AATT 2 cut(s) 787, 949
SsiI CCGC 9 cut(s) 78, 87, 105, 108, 145, 151, 177, 890, 1007
SspMI CTAG 3 cut(s) 354, 389, 447
StyD4I CCNGG 7 cut(s) 203, 511, 796, 1041, 1042, 1099, 1150
StyI CCWWGG 2 cut(s) 45, 276
TaaI ACNGT 2 cut(s) 397, 1163
TaiI ACGT 1 cut(s) 233
TaqI TCGA 7 cut(s) 26, 215, 224, 263, 294, 309, 646
TasI AATT 2 cut(s) 787, 949
TauI GCSGC 3 cut(s) 110, 892, 1009
TfiI GAWTC 3 cut(s) 28, 536, 733
Tru1I TTAA 2 cut(s) 552, 585
Tru9I TTAA 2 cut(s) 552, 585
TscAI CASTG 2 cut(s) 320, 603
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 1 cut(s) 844
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 42, 440
TspGWI ACGGA 1 cut(s) 509
TspMI CCCGGG 1 cut(s) 1042
TspRI CASTG 2 cut(s) 320, 603
Tth111I GACNNNGTC 1 cut(s) 229
Van91I CCANNNNNTGG 1 cut(s) 46
VpaK11BI GGWCC 9 cut(s) 244, 755, 794, 800, 815, 836, 860, 905, 1154
VspI ATTAAT 1 cut(s) 585
XapI RAATTY 2 cut(s) 787, 949
XcmI CCANNNNNNNNNTGG 1 cut(s) 942
XmaI CCCGGG 1 cut(s) 1042
XmiI GTMKAC 1 cut(s) 215
XspI CTAG 3 cut(s) 354, 389, 447
ZraI GACGTC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.