Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014478.1

Orthogroup ID

OG0009062

Physical Location & Seq

Genomic Coordinates Forward (+)

24610 .. 25895

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014478.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggcgacccatttcctctctcgctccttccccaaaaccctagccctctcctccttcctctcccgctctctttccaccgccgccaccaccgcctccaccctctcctccgctcactcccgctcctccctctccctcatcagccgcctccgccccctcgccggcgccggcgccatcaccgccttcccgggcaagctctctcccgccgccatccgttgcttctcggccaacgccaccacctcctcgctccgcgacccgaaccccaactggtccaaccggcctcccaaggagactatcctcctcgatggctgcgacttcgagcactggctcgtcgtcatggagccgccgccggaggggaccactagggatgacaccatcaaggagtacatcaaaaccctagccatggtcgtcggaagtgaggaagaagcgaggatgaagatctactctgtttcaactaggtgttattttgcatttggtgcactcgtgtctgaagagctttcatacaaaatcaaggaattgccaaaggtccgctgggtgcttcctgattcgtacctggatgttaagaacaaagattatggagctgtaactgaattctatgcctttctttgggtgggaaaggatagtctgaggctttataatgctatgcatgattgttttccttacaggctgttgatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

24.98

Weight (kDa)

8.84

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53260 AT1G53260 AT3G15000
fragaria_vesca	FvH4_3g18600
malus_domestica	MD03G1240700.v1.1 MD11G1260100.v1.1
prunus_persica	Prupe.4G168200_v2.0.a1
pyrus_communis	pycom03g18720 pycom11g22960
rosa_chinensis	RchiOBHm_Chr5g0031431
rosa_laevigata	RLG00000033306
rosa_multiflora	Rmu_co8400365.1_g000001 Rmu_sc0002426.1_g000011 Rmu_sc0014478.1_g000008 Rmu_sc0014478.1_g000009
rosa_roxburghii	Rroxscaffold_1G00048920
rosa_rugosa	Rorug05G0125300
rosa_samantha	Rh5AG218100 Rh5BG217700 Rh5CG241400 Rh5DG223000
rosa_wichuraiana	Rw5G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
AccB1I	GGYRCC	2 cut(s)	161, 167
AccBSI	CCGCTC	3 cut(s)	66, 110, 120
AccII	CGCG	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	587
AcuI	CTGAAG	1 cut(s)	507
AcyI	GRCGYC	2 cut(s)	162, 168
AfaI	GTAC	2 cut(s)	383, 548
AfiI	CCNNNNNNNGG	4 cut(s)	158, 350, 400, 603
AgsI	TTSAA	1 cut(s)	450
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	3 cut(s)	193, 493, 578
AluI	AGCT	3 cut(s)	193, 493, 578
Alw21I	GWGCWC	2 cut(s)	321, 478
Alw26I	GTCTC	1 cut(s)	281
Alw44I	GTGCAC	1 cut(s)	474
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	2 cut(s)	222, 275
ApaLI	GTGCAC	1 cut(s)	474
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	1 cut(s)	587
AspLEI	GCGC	2 cut(s)	164, 170
AspS9I	GGNCC	3 cut(s)	267, 354, 523
AsuC2I	CCSGG	2 cut(s)	185, 186
AsuHPI	GGTGA	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	184
AvaII	GGWCC	3 cut(s)	267, 354, 523
BaeGI	GKGCMC	1 cut(s)	478
BanI	GGYRCC	2 cut(s)	161, 167
BauI	CACGAG	1 cut(s)	479
Bbv12I	GWGCWC	2 cut(s)	321, 478
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	4 cut(s)	179, 215, 296, 380
BciT130I	CCWGG	1 cut(s)	551
BcnI	CCSGG	2 cut(s)	185, 186
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	4 cut(s)	41, 360, 395, 453
BfoI	RGCGCY	2 cut(s)	165, 171
BglII	AGATCT	1 cut(s)	435
BisI	GCNGC	6 cut(s)	81, 142, 204, 307, 341, 344
BlsI	GCNGC	6 cut(s)	82, 143, 205, 308, 342, 345
Bme1390I	CCNGG	3 cut(s)	185, 186, 551
Bme18I	GGWCC	3 cut(s)	267, 354, 523
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	267, 354, 523
BmiI	GGNNCC	4 cut(s)	163, 169, 339, 355
BmrFI	CCNGG	3 cut(s)	185, 186, 551
BpuMI	CCSGG	2 cut(s)	185, 186
BsaBI	GATNNNNATC	1 cut(s)	434
BsaHI	GRCGYC	2 cut(s)	162, 168
BsaJI	CCNNGG	3 cut(s)	184, 282, 399
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 350, 400, 603
Bse118I	RCCGGY	3 cut(s)	158, 164, 273
Bse1I	ACTGG	2 cut(s)	269, 326
Bse8I	GATNNNNATC	1 cut(s)	434
BseBI	CCWGG	1 cut(s)	551
BseDI	CCNNGG	3 cut(s)	184, 282, 399
BseGI	GGATG	4 cut(s)	207, 370, 435, 559
BseJI	GATNNNNATC	1 cut(s)	434
BseLI	CCNNNNNNNGG	4 cut(s)	158, 350, 400, 603
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	2 cut(s)	269, 326
BseRI	GAGGAG	5 cut(s)	40, 94, 112, 229, 287
BseSI	GKGCMC	1 cut(s)	478
BseXI	GCAGC	1 cut(s)	293
BseYI	CCCAGC	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	224, 277
BshNI	GGYRCC	2 cut(s)	161, 167
BsiHKAI	GWGCWC	2 cut(s)	321, 478
BsiHKCI	CYCGRG	1 cut(s)	184
BsiSI	CCGG	5 cut(s)	159, 165, 185, 274, 347
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	4 cut(s)	158, 350, 400, 603
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	224, 277
BsoBI	CYCGRG	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	321, 478
Bsp143I	GATC	1 cut(s)	435
Bsp19I	CCATGG	1 cut(s)	399
BspANI	GGCC	2 cut(s)	224, 277
BspCNI	CTCAG	1 cut(s)	615
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	4 cut(s)	163, 169, 339, 355
BspQI	GCTCTTC	1 cut(s)	483
BspT107I	GGYRCC	2 cut(s)	161, 167
BsrBI	CCGCTC	3 cut(s)	66, 110, 120
BsrFI	RCCGGY	3 cut(s)	158, 164, 273
BsrI	ACTGG	2 cut(s)	269, 326
BssAI	RCCGGY	3 cut(s)	158, 164, 273
BssECI	CCNNGG	3 cut(s)	184, 282, 399
BssMI	GATC	1 cut(s)	435
BssNI	GRCGYC	2 cut(s)	162, 168
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	2 cut(s)	282, 399
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	551
Bst6I	CTCTTC	1 cut(s)	483
BstACI	GRCGYC	2 cut(s)	162, 168
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstC8I	GCNNGC	3 cut(s)	160, 166, 191
BstDEI	CTNAG	1 cut(s)	623
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	4 cut(s)	207, 370, 435, 559
BstFNI	CGCG	1 cut(s)	249
BstH2I	RGCGCY	2 cut(s)	165, 171
BstHHI	GCGC	2 cut(s)	164, 170
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 147, 176, 473
BstNI	CCWGG	1 cut(s)	551
BstSCI	CCNGG	3 cut(s)	183, 184, 549
BstSLI	GKGCMC	1 cut(s)	478
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	224, 277
BtgI	CCRYGG	1 cut(s)	399
BtsCI	GGATG	4 cut(s)	207, 370, 435, 559
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	3 cut(s)	160, 166, 191
CfoI	GCGC	2 cut(s)	164, 170
Cfr10I	RCCGGY	3 cut(s)	158, 164, 273
Cfr13I	GGNCC	3 cut(s)	267, 354, 523
Cfr9I	CCCGGG	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	382, 547
CviAII	CATG	3 cut(s)	334, 400, 644
CviQI	GTAC	2 cut(s)	382, 547
DdeI	CTNAG	1 cut(s)	623
DinI	GGCGCC	2 cut(s)	163, 169
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	2 cut(s)	282, 399
Eco47I	GGWCC	3 cut(s)	267, 354, 523
Eco57I	CTGAAG	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	549
EcoT14I	CCWWGG	2 cut(s)	282, 399
EcoT22I	ATGCAT	1 cut(s)	645
EgeI	GGCGCC	2 cut(s)	163, 169
EheI	GGCGCC	2 cut(s)	163, 169
ErhI	CCWWGG	2 cut(s)	282, 399
FaeI	CATG	3 cut(s)	337, 403, 647
FaiI	YATR	8 cut(s)	335, 401, 499, 573, 594, 633, 641, 645
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	3 cut(s)	333, 399, 643
FauI	CCCGC	3 cut(s)	71, 125, 208
Fnu4HI	GCNGC	6 cut(s)	81, 142, 204, 307, 341, 344
FokI	GGATG	4 cut(s)	194, 377, 442, 566
Fsp4HI	GCNGC	6 cut(s)	81, 142, 204, 307, 341, 344
FspBI	CTAG	4 cut(s)	41, 360, 395, 453
GlaI	GCGC	2 cut(s)	163, 169
GluI	GCNGC	6 cut(s)	81, 142, 204, 307, 341, 344
GsaI	CCCAGC	1 cut(s)	532
HaeII	RGCGCY	2 cut(s)	165, 171
HaeIII	GGCC	2 cut(s)	224, 277
HapII	CCGG	5 cut(s)	159, 165, 185, 274, 347
HhaI	GCGC	2 cut(s)	164, 170
Hin1I	GRCGYC	2 cut(s)	162, 168
Hin1II	CATG	3 cut(s)	337, 403, 647
Hin6I	GCGC	2 cut(s)	162, 168
HinP1I	GCGC	2 cut(s)	162, 168
HinfI	GANTC	1 cut(s)	542
HpaII	CCGG	5 cut(s)	159, 165, 185, 274, 347
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	3 cut(s)	410, 487, 624
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	1 cut(s)	476
Hpy99I	CGWCG	2 cut(s)	332, 410
HpyAV	CCTTC	3 cut(s)	37, 64, 190
HpyCH4V	TGCA	3 cut(s)	467, 476, 643
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 147, 176, 473
HpyF3I	CTNAG	1 cut(s)	623
Hsp92I	GRCGYC	2 cut(s)	162, 168
Hsp92II	CATG	3 cut(s)	337, 403, 647
HspAI	GCGC	2 cut(s)	162, 168
KasI	GGCGCC	2 cut(s)	161, 167
KroI	GCCGGC	2 cut(s)	158, 164
KroNI	GCCGGC	2 cut(s)	160, 166
Kzo9I	GATC	1 cut(s)	435
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	5 cut(s)	29, 125, 249, 337, 575
Lsp1109I	GCAGC	1 cut(s)	293
MaeI	CTAG	4 cut(s)	41, 360, 395, 453
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	1 cut(s)	437
MbiI	CCGCTC	3 cut(s)	66, 110, 120
MboI	GATC	1 cut(s)	435
MboII	GAAGA	3 cut(s)	431, 445, 500
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	2 cut(s)	321, 478
MluCI	AATT	2 cut(s)	512, 587
Mly113I	GGCGCC	2 cut(s)	162, 168
MmeI	TCCRAC	2 cut(s)	294, 388
Mph1103I	ATGCAT	1 cut(s)	645
MreI	CGCCGGCG	2 cut(s)	158, 164
MroNI	GCCGGC	2 cut(s)	158, 164
MseI	TTAA	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	528
MspI	CCGG	5 cut(s)	159, 165, 185, 274, 347
MspR9I	CCNGG	3 cut(s)	185, 186, 551
MvaI	CCWGG	1 cut(s)	551
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	4 cut(s)	89, 147, 176, 473
NaeI	GCCGGC	2 cut(s)	160, 166
NarI	GGCGCC	2 cut(s)	162, 168
NciI	CCSGG	2 cut(s)	185, 186
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	1 cut(s)	435
NgoMIV	GCCGGC	2 cut(s)	158, 164
NlaIII	CATG	3 cut(s)	337, 403, 647
NlaIV	GGNNCC	4 cut(s)	163, 169, 339, 355
NmeAIII	GCCGAG	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	645
PciSI	GCTCTTC	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PdiI	GCCGGC	2 cut(s)	160, 166
PfeI	GAWTC	1 cut(s)	542
PkrI	GCNGC	6 cut(s)	82, 143, 205, 308, 342, 345
PluTI	GGCGCC	2 cut(s)	165, 171
PsiI	TTATAA	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	4 cut(s)	163, 169, 339, 355
PspPI	GGNCC	3 cut(s)	267, 354, 523
PsuI	RGATCY	1 cut(s)	435
RsaI	GTAC	2 cut(s)	383, 548
RsaNI	GTAC	2 cut(s)	382, 547
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	6 cut(s)	81, 142, 204, 307, 341, 344
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	3 cut(s)	267, 354, 523
ScrFI	CCNGG	3 cut(s)	185, 186, 551
SduI	GDGCHC	2 cut(s)	321, 478
SetI	ASST	7 cut(s)	195, 239, 458, 495, 525, 552, 580
SfoI	GGCGCC	2 cut(s)	163, 169
SgrAI	CRCCGGYG	2 cut(s)	158, 164
SinI	GGWCC	3 cut(s)	267, 354, 523
SmaI	CCCGGG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	512, 587
SspDI	GGCGCC	2 cut(s)	161, 167
SspMI	CTAG	4 cut(s)	41, 360, 395, 453
StyD4I	CCNGG	3 cut(s)	183, 184, 549
StyI	CCWWGG	2 cut(s)	282, 399
TaqI	TCGA	2 cut(s)	300, 315
TasI	AATT	2 cut(s)	512, 587
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	5 cut(s)	83, 144, 206, 343, 346
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	1 cut(s)	306
TspDTI	ATGAA	2 cut(s)	446, 486
TspGWI	ACGGA	1 cut(s)	200
TspMI	CCCGGG	1 cut(s)	184
TspRI	CASTG	1 cut(s)	326
VneI	GTGCAC	1 cut(s)	474
VpaK11BI	GGWCC	3 cut(s)	267, 354, 523
XapI	RAATTY	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XmaI	CCCGGG	1 cut(s)	184
XspI	CTAG	4 cut(s)	41, 360, 395, 453
Zsp2I	ATGCAT	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.