Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009062

Physical Location & Seq

Genomic Coordinates Reverse (-)

11141076 .. 11150800

Gene Structure 9725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0125300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2313 bp

ATGTTAGGAGTAGTAGTACCAATATTGGTGGTGGTGGTATTAGCGGCTGCAACAAGTAGTAGTACAACATCTGCACAAGCCTTGCCTAACTGTCCCGATCGCTGCGGTGATGTGAAAATCTCCTATCCATTTGGCACTGTTAAAGGTTGTTACCTGCGAGATGAGTTTTTTATCAACTGTACTAGTGCTGAAGGCAATGCCTCAGTTGCAAAACTCACGAGTCCTCCCTCATCGTCACCAACATCACCATTGACTGATCTCATTGTTACTGACATAAGCCTTGACAACGCTGAGTTGCGTATCTTGTCCTCTGTATACCAAGACTGCGGCGACCGCAAAGAGACCCTGAACCAGTGGCTTCGGCTGCCCTCTCCTTTTGCATTTTCCACCAAAAACATCTTCTTTGCCGTCGGCTGTGCCACTTTTGCAAAATATCGAGGTTACCAATATCGTCCCCCCGGCAGGATCCTGGGCCCACATGAAGATCAAGCCTACAACAAAAGCGGTTTTGCCGTAACCCAATGTGATGATAGTCTTGGCACCACTTGCTCTGGCAATGGCTGTTCCCAATCTTCAATCCCGAGTGGACTGCAAAATTTCACTGTTGAGTCTTTGTTAAGCATCAGCATAAATGGCTATATCCCTAATCAGGGAAAGTGGTACAGTCCATACTTAGGGTGCAACTACGGCTTCCTTGCGGAAGAAGGCAACTTCTCTTTCTCCCCCAATATAAGTTTTGCCCAACTCCAAAAGTACAGAAGGCTGCTGGTCCCAACCACAACGGTGGTTAATTGGCAAATTGGGGATGAGCCGTGTGAAGAAGCTCAAAAGAGCAAGGGAAGTTATGCTTGCAATGGAAATAGCACGTGCGTCAATTGGTCCAATGTCAATGAGGGTGGATATGGTGGATGGCATCTAGGCTACATTTGCCGGTGCTTGCCAGGTTACCAAGGGAATCCATACCTTGCAGATGGTTGTCAAGATATCAATGAGTGTCAGAGTTCAAACCGCTGCAGGACAGAAGAACTCTGCGTAAATCTACCAGGACAGTATAAATGTGATCCCAATCAATTGAAGACATCTCTGAGGTTTTTAATTTCATTTGGTATCTTTGCATCAGTCTTTGTGATAGTGGTTGGAGGTTTAGGATCGATATATTGGGAAATTAAGAAACGAGAGTACATGATTTTGAAAGAAAAGTACTTTGAAAAAAATGGTGGTTTATTGTTACTACAGCTTGCTAATCATCATGGAGTGGAGATGGCCAAAATATTTACTGCAGAAGAACTTGAGAAGGCCACAAACAATTATCATGAAAGCAGAGTCCTTGGTGAAGGAGGTTGTGGAATAGTTTACAAGGGAATATTGCAGAATGACAGAACGGTTGCCATAAAGAAGCCCAAAGTTGGTGACTCATCCCACAGAAGTACTACCCCAACCCACAGCACTCCCAGTCAGCAGTTTGTTAATGAAGTGATTATTCTTTCACAAATCAACCACATAAATGTGGTGAGGTTATTGGGTTGTTGCTTGGAGACATCGGTGCCTATACTCGTTTATGAGTTCATCACTAATGGCACCCTTTTTAAGCACCTTCATGGAGATAAAGAGGGAAAAAGATCATCACCACCACTTTTTTGGGATTTACGATTAAAGATAGCAACAGAAACTGCTGGTGCATTGGCATACTTACACTCCTCCACTTCGACGCCAATATTACATCGAGATGTGAAGACAATGAACATACTGCTAGATGAAAACTACACTGCAAAAGTCGCTGACTTTGGAGCTTCACAATTGATTCGACCTCTTGATGAAAAGCAAATGACAACTTTTGTGCAAGGGACACTCGGATACTTGGACCCTGAATATTTTCACTCGGATGAATTTACAGAAAAAAGCGACGTCTATAGCTTTGGAGTTGTCCTAGTGGAGCTACTGACAAGTAAAAAGGCATTTTCTTTTGCTAGGCCAGATGCAGAGAGAAACCTTTCAAAATTGTTTGTTTCTTCGGTGGAAGACGGTCGCTTGAAGGAAATTCTTGACAATGACATGGTCGATGAGGCAAATATTAATGATACAATGGTACTAGAAAATGTGGCTTATCTGGCAAAGAGATGTTTGAGAGTAAAAGGGGACGAAAGGCCTACTATGAAAGAAGTAGCCATGGAGCTAGAGTGTTTAGATAAAGGATTGACTTCTATTTATGATATGACACATAAGCATTACTTTATTTGTCAAGACGAGACTGATGAGGACTTGCTGGGATCATCAACTTCAAATACCGCTGACGTTGCTGCAGATGTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

770

Amino Acids

85.11

Weight (kDa)

5.47

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	31 - 101	1.1e-06	Wall-associated receptor kinase galacturonan-binding
Pkinase	PF00069	437 - 721	1.1e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	440 - 725	9e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53260 AT1G53260 AT3G15000
fragaria_vesca	FvH4_3g18600
malus_domestica	MD03G1240700.v1.1 MD11G1260100.v1.1
prunus_persica	Prupe.4G168200_v2.0.a1
pyrus_communis	pycom03g18720 pycom11g22960
rosa_chinensis	RchiOBHm_Chr5g0031431
rosa_laevigata	RLG00000033306
rosa_multiflora	Rmu_co8400365.1_g000001 Rmu_sc0002426.1_g000011 Rmu_sc0014478.1_g000008 Rmu_sc0014478.1_g000009
rosa_roxburghii	Rroxscaffold_1G00048920
rosa_rugosa	Rorug05G0125300
rosa_samantha	Rh5AG218100 Rh5BG217700 Rh5CG241400 Rh5DG223000
rosa_wichuraiana	Rw5G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1908
Acc36I	ACCTGC	1 cut(s)	162
AccB1I	GGYRCC	3 cut(s)	539, 1543, 1577
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	8 cut(s)	44, 105, 327, 334, 504, 698, 1009, 2286
AclWI	GGATC	5 cut(s)	460, 473, 1055, 1156, 2275
AcoI	YGGCCR	1 cut(s)	1263
AcsI	RAATTY	3 cut(s)	595, 1886, 2037
AcuI	CTGAAG	1 cut(s)	210
AcvI	CACGTG	1 cut(s)	867
AcyI	GRCGYC	2 cut(s)	1709, 1905
AfaI	GTAC	9 cut(s)	18, 64, 181, 662, 755, 1181, 1202, 1429, 2088
AfiI	CCNNNNNNNGG	5 cut(s)	462, 649, 650, 674, 1406
AgsI	TTSAA	8 cut(s)	576, 1005, 1075, 1192, 1208, 1995, 2032, 2280
AhlI	ACTAGT	1 cut(s)	182
AjnI	CCWGG	3 cut(s)	468, 940, 1042
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AleI	CACNNNNGTG	1 cut(s)	782
AluBI	AGCT	6 cut(s)	824, 1237, 1790, 1914, 1936, 2173
AluI	AGCT	6 cut(s)	824, 1237, 1790, 1914, 1936, 2173
Alw26I	GTCTC	3 cut(s)	335, 1529, 2240
AlwI	GGATC	5 cut(s)	460, 473, 1055, 1156, 2275
AlwNI	CAGNNNCTG	1 cut(s)	1670
Ama87I	CYCGRG	1 cut(s)	580
AoxI	GGCC	5 cut(s)	472, 1263, 1296, 1970, 2144
ApaI	GGGCCC	1 cut(s)	476
ApeKI	GCWGC	6 cut(s)	47, 102, 364, 763, 1011, 2297
ApoI	RAATTY	3 cut(s)	595, 1886, 2037
AseI	ATTAAT	1 cut(s)	2073
Asp700I	GAANNNNTTC	2 cut(s)	1872, 1990
AspS9I	GGNCC	5 cut(s)	472, 473, 769, 879, 1861
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	7 cut(s)	119, 228, 237, 1343, 1421, 1522, 1617
AvaI	CYCGRG	1 cut(s)	580
AvaII	GGWCC	3 cut(s)	769, 879, 1861
BaeGI	GKGCMC	1 cut(s)	476
BaeI	ACNNNNGTAYC	2 cut(s)	2070, 2103
BalI	TGGCCA	1 cut(s)	1265
BamHI	GGATCC	1 cut(s)	465
BanI	GGYRCC	3 cut(s)	539, 1543, 1577
BanII	GRGCYC	1 cut(s)	476
BauI	CACGAG	1 cut(s)	217
BbrPI	CACGTG	1 cut(s)	867
BbsI	GAAGAC	3 cut(s)	1082, 1739, 2025
BbvI	GCAGC	6 cut(s)	34, 89, 351, 750, 998, 2284
BccI	CCATC	3 cut(s)	903, 965, 1255
BceAI	ACGGC	4 cut(s)	392, 497, 703, 796
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BciT130I	CCWGG	3 cut(s)	470, 942, 1044
BciVI	GTATCC	1 cut(s)	1847
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	3 cut(s)	335, 1529, 2240
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	7 cut(s)	183, 917, 1751, 1928, 1968, 2090, 2174
BfmI	CTRYAG	5 cut(s)	1012, 1232, 1278, 1909, 2298
BfuAI	ACCTGC	1 cut(s)	162
BfuI	GTATCC	1 cut(s)	1847
BisI	GCNGC	8 cut(s)	45, 48, 103, 328, 365, 764, 1012, 2298
BlsI	GCNGC	8 cut(s)	46, 49, 104, 329, 366, 765, 1013, 2299
BmcAI	AGTACT	2 cut(s)	1202, 1429
Bme1390I	CCNGG	4 cut(s)	459, 470, 942, 1044
Bme18I	GGWCC	3 cut(s)	769, 879, 1861
BmeT110I	CYCGRG	1 cut(s)	580
BmgT120I	GGNCC	5 cut(s)	472, 473, 769, 879, 1861
BmiI	GGNNCC	7 cut(s)	467, 474, 541, 771, 1545, 1579, 1863
BmrFI	CCNGG	4 cut(s)	459, 470, 942, 1044
BmrI	ACTGGG	1 cut(s)	1446
BmsI	GCATC	4 cut(s)	630, 922, 1124, 1966
BmuI	ACTGGG	1 cut(s)	1446
BpiI	GAAGAC	3 cut(s)	1082, 1739, 2025
BpuEI	CTTGAG	1 cut(s)	1310
BpuMI	CCSGG	1 cut(s)	459
Bsa29I	ATCGAT	1 cut(s)	1151
BsaAI	YACGTR	1 cut(s)	867
BsaBI	GATNNNNATC	1 cut(s)	1065
BsaHI	GRCGYC	2 cut(s)	1709, 1905
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	5 cut(s)	457, 469, 949, 1327, 2166
BsaXI	ACNNNNNCTCC	7 cut(s)	30, 208, 238, 1679, 1709, 2162, 2192
Bsc4I	CCNNNNNNNGG	5 cut(s)	462, 649, 650, 674, 1406
Bse118I	RCCGGY	1 cut(s)	930
Bse1I	ACTGG	2 cut(s)	352, 1452
Bse3DI	GCAATG	3 cut(s)	202, 562, 859
Bse8I	GATNNNNATC	1 cut(s)	1065
BseBI	CCWGG	3 cut(s)	470, 942, 1044
BseCI	ATCGAT	1 cut(s)	1151
BseDI	CCNNGG	5 cut(s)	457, 469, 949, 1327, 2166
BseGI	GGATG	4 cut(s)	811, 914, 1415, 1888
BseJI	GATNNNNATC	1 cut(s)	1065
BseLI	CCNNNNNNNGG	5 cut(s)	462, 649, 650, 674, 1406
BseMI	GCAATG	3 cut(s)	202, 562, 859
BseMII	CTCAG	3 cut(s)	216, 282, 1076
BseNI	ACTGG	2 cut(s)	352, 1452
BseRI	GAGGAG	1 cut(s)	1687
BseSI	GKGCMC	1 cut(s)	476
BseXI	GCAGC	6 cut(s)	34, 89, 351, 750, 998, 2284
BseYI	CCCAGC	1 cut(s)	2263
BsgI	GTGCAG	1 cut(s)	57
Bsh1285I	CGRYCG	3 cut(s)	100, 334, 2026
BshFI	GGCC	5 cut(s)	474, 1265, 1298, 1972, 2146
BshNI	GGYRCC	3 cut(s)	539, 1543, 1577
BshVI	ATCGAT	1 cut(s)	1151
BsiEI	CGRYCG	3 cut(s)	100, 334, 2026
BsiHKCI	CYCGRG	1 cut(s)	580
BsiSI	CCGG	2 cut(s)	459, 931
BslFI	GGGAC	5 cut(s)	78, 438, 755, 1858, 2150
BslI	CCNNNNNNNGG	5 cut(s)	462, 649, 650, 674, 1406
BsmAI	GTCTC	3 cut(s)	335, 1529, 2240
BsmFI	GGGAC	5 cut(s)	78, 438, 755, 1858, 2150
BsnI	GGCC	5 cut(s)	474, 1265, 1298, 1972, 2146
Bso31I	GGTCTC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	580
Bsp120I	GGGCCC	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp143I	GATC	8 cut(s)	97, 256, 465, 484, 1060, 1148, 1619, 2267
Bsp19I	CCATGG	1 cut(s)	2166
BspACI	CCGC	8 cut(s)	44, 105, 327, 334, 504, 698, 1009, 2286
BspANI	GGCC	5 cut(s)	474, 1265, 1298, 1972, 2146
BspCNI	CTCAG	3 cut(s)	215, 283, 1077
BspDI	ATCGAT	1 cut(s)	1151
BspHI	TCATGA	1 cut(s)	1312
BspLI	GGNNCC	7 cut(s)	467, 474, 541, 771, 1545, 1579, 1863
BspMAI	CTGCAG	3 cut(s)	1016, 1282, 2302
BspMI	ACCTGC	1 cut(s)	162
BspPI	GGATC	5 cut(s)	460, 473, 1055, 1156, 2275
BspT107I	GGYRCC	3 cut(s)	539, 1543, 1577
BspTNI	GGTCTC	1 cut(s)	335
BsrDI	GCAATG	3 cut(s)	202, 562, 859
BsrFI	RCCGGY	1 cut(s)	930
BsrI	ACTGG	2 cut(s)	352, 1452
BssAI	RCCGGY	1 cut(s)	930
BssECI	CCNNGG	5 cut(s)	457, 469, 949, 1327, 2166
BssMI	GATC	8 cut(s)	97, 256, 465, 484, 1060, 1148, 1619, 2267
BssNAI	GTATAC	1 cut(s)	316
BssNI	GRCGYC	2 cut(s)	1709, 1905
BssSI	CACGAG	1 cut(s)	217
BssT1I	CCWWGG	3 cut(s)	949, 1327, 2166
Bst1107I	GTATAC	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	217
Bst2UI	CCWGG	3 cut(s)	470, 942, 1044
Bst4CI	ACNGT	9 cut(s)	92, 139, 179, 604, 665, 784, 1050, 1384, 2024
BstACI	GRCGYC	2 cut(s)	1709, 1905
BstAPI	GCANNNNNTGC	1 cut(s)	546
BstBAI	YACGTR	1 cut(s)	867
BstC8I	GCNNGC	3 cut(s)	850, 938, 1239
BstDEI	CTNAG	4 cut(s)	202, 291, 673, 1085
BstDSI	CCRYGG	1 cut(s)	2166
BstEII	GGTNACC	2 cut(s)	440, 944
BstF5I	GGATG	4 cut(s)	811, 914, 1415, 1888
BstKTI	GATC	8 cut(s)	100, 259, 468, 487, 1063, 1151, 1622, 2270
BstMAI	GTCTC	3 cut(s)	335, 1529, 2240
BstMBI	GATC	8 cut(s)	97, 256, 465, 484, 1060, 1148, 1619, 2267
BstMCI	CGRYCG	3 cut(s)	100, 334, 2026
BstNI	CCWGG	3 cut(s)	470, 942, 1044
BstPI	GGTNACC	2 cut(s)	440, 944
BstSCI	CCNGG	4 cut(s)	457, 468, 940, 1042
BstSFI	CTRYAG	5 cut(s)	1012, 1232, 1278, 1909, 2298
BstSLI	GKGCMC	1 cut(s)	476
BstV1I	GCAGC	6 cut(s)	34, 89, 351, 750, 998, 2284
BstV2I	GAAGAC	3 cut(s)	1082, 1739, 2025
BstX2I	RGATCY	1 cut(s)	465
BstXI	CCANNNNNNTGG	2 cut(s)	784, 1638
BstYI	RGATCY	1 cut(s)	465
BstZ17I	GTATAC	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	1151
BsuI	GTATCC	1 cut(s)	1847
BsuRI	GGCC	5 cut(s)	474, 1265, 1298, 1972, 2146
BsuTUI	ATCGAT	1 cut(s)	1151
BtgI	CCRYGG	1 cut(s)	2166
BtsCI	GGATG	4 cut(s)	811, 914, 1415, 1888
BtsI	GCAGTG	1 cut(s)	1764
BtsIMutI	CAGTG	4 cut(s)	135, 359, 600, 1764
BveI	ACCTGC	1 cut(s)	162
Cac8I	GCNNGC	3 cut(s)	850, 938, 1239
CaiI	CAGNNNCTG	1 cut(s)	1670
CciI	TCATGA	1 cut(s)	1312
Cfr10I	RCCGGY	1 cut(s)	930
Cfr13I	GGNCC	5 cut(s)	472, 473, 769, 879, 1861
ClaI	ATCGAT	1 cut(s)	1151
CseI	GACGC	2 cut(s)	859, 1717
Csp6I	GTAC	9 cut(s)	17, 63, 180, 661, 754, 1180, 1201, 1428, 2087
CspCI	CAANNNNNGTGG	4 cut(s)	9, 44, 877, 912
CviAII	CATG	7 cut(s)	479, 1183, 1250, 1313, 1598, 2053, 2167
CviQI	GTAC	9 cut(s)	17, 63, 180, 661, 754, 1180, 1201, 1428, 2087
DdeI	CTNAG	4 cut(s)	202, 291, 673, 1085
DpnI	GATC	8 cut(s)	99, 258, 467, 486, 1062, 1150, 1621, 2269
DpnII	GATC	8 cut(s)	97, 256, 465, 484, 1060, 1148, 1619, 2267
EaeI	YGGCCR	1 cut(s)	1263
Eco130I	CCWWGG	3 cut(s)	949, 1327, 2166
Eco147I	AGGCCT	1 cut(s)	2146
Eco24I	GRGCYC	1 cut(s)	476
Eco31I	GGTCTC	1 cut(s)	335
Eco32I	GATATC	1 cut(s)	985
Eco47I	GGWCC	3 cut(s)	769, 879, 1861
Eco57I	CTGAAG	1 cut(s)	210
Eco72I	CACGTG	1 cut(s)	867
Eco88I	CYCGRG	1 cut(s)	580
Eco91I	GGTNACC	2 cut(s)	440, 944
EcoO65I	GGTNACC	2 cut(s)	440, 944
EcoRII	CCWGG	3 cut(s)	468, 940, 1042
EcoRV	GATATC	1 cut(s)	985
EcoT14I	CCWWGG	3 cut(s)	949, 1327, 2166
EcoT38I	GRGCYC	1 cut(s)	476
ErhI	CCWWGG	3 cut(s)	949, 1327, 2166
FaeI	CATG	7 cut(s)	482, 1186, 1253, 1316, 1601, 2056, 2170
FalI	AAGNNNNNCTT	4 cut(s)	832, 864, 2213, 2245
FaqI	GGGAC	5 cut(s)	78, 438, 755, 1858, 2150
FatI	CATG	7 cut(s)	478, 1182, 1249, 1312, 1597, 2052, 2166
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	8 cut(s)	45, 48, 103, 328, 365, 764, 1012, 2298
FokI	GGATG	4 cut(s)	818, 921, 1402, 1895
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	8 cut(s)	45, 48, 103, 328, 365, 764, 1012, 2298
FspBI	CTAG	7 cut(s)	183, 917, 1751, 1928, 1968, 2090, 2174
GluI	GCNGC	8 cut(s)	45, 48, 103, 328, 365, 764, 1012, 2298
GsaI	CCCAGC	1 cut(s)	2267
HaeIII	GGCC	5 cut(s)	474, 1265, 1298, 1972, 2146
HapII	CCGG	2 cut(s)	459, 931
HgaI	GACGC	2 cut(s)	859, 1717
Hin1I	GRCGYC	2 cut(s)	1709, 1905
Hin1II	CATG	7 cut(s)	482, 1186, 1253, 1316, 1601, 2056, 2170
HinfI	GANTC	6 cut(s)	220, 608, 955, 1323, 1412, 1801
HpaII	CCGG	2 cut(s)	459, 931
HphI	GGTGA	7 cut(s)	119, 228, 237, 1343, 1421, 1522, 1617
Hpy166II	GTNNAC	3 cut(s)	316, 587, 1354
Hpy188I	TCNGA	4 cut(s)	999, 1086, 1853, 1882
Hpy188III	TCNNGA	9 cut(s)	95, 217, 580, 980, 1313, 1724, 1811, 2042, 2240
Hpy8I	GTNNAC	3 cut(s)	316, 587, 1354
Hpy99I	CGWCG	3 cut(s)	413, 1711, 1907
HpyAV	CCTTC	7 cut(s)	185, 698, 753, 1288, 1328, 1604, 2026
HpyCH4III	ACNGT	9 cut(s)	92, 139, 179, 604, 665, 784, 1050, 1384, 2024
HpyCH4IV	ACGT	3 cut(s)	866, 1905, 2292
HpyF3I	CTNAG	4 cut(s)	202, 291, 673, 1085
HpySE526I	ACGT	3 cut(s)	866, 1905, 2292
Hsp92I	GRCGYC	2 cut(s)	1709, 1905
Hsp92II	CATG	7 cut(s)	482, 1186, 1253, 1316, 1601, 2056, 2170
Kzo9I	GATC	8 cut(s)	97, 256, 465, 484, 1060, 1148, 1619, 2267
LmnI	GCTCC	3 cut(s)	1787, 1933, 2170
Lsp1109I	GCAGC	6 cut(s)	34, 89, 351, 750, 998, 2284
LweI	GCATC	4 cut(s)	630, 922, 1124, 1966
MaeI	CTAG	7 cut(s)	183, 917, 1751, 1928, 1968, 2090, 2174
MaeII	ACGT	3 cut(s)	866, 1905, 2292
MaeIII	GTNAC	8 cut(s)	149, 234, 265, 440, 514, 944, 1227, 1409
MalI	GATC	8 cut(s)	99, 258, 467, 486, 1062, 1150, 1621, 2269
MboI	GATC	8 cut(s)	97, 256, 465, 484, 1060, 1148, 1619, 2267
MfeI	CAATTG	3 cut(s)	874, 1070, 1796
MflI	RGATCY	1 cut(s)	465
MhlI	GDGCHC	1 cut(s)	476
MlsI	TGGCCA	1 cut(s)	1265
MluNI	TGGCCA	1 cut(s)	1265
MlyI	GAGTC	4 cut(s)	229, 617, 1332, 1406
MmeI	TCCRAC	1 cut(s)	1117
Mox20I	TGGCCA	1 cut(s)	1265
MroXI	GAANNNNTTC	2 cut(s)	1872, 1990
MscI	TGGCCA	1 cut(s)	1265
MseI	TTAA	9 cut(s)	141, 617, 789, 1094, 1167, 1467, 1587, 1652, 2073
MslI	CAYNNNNRTG	6 cut(s)	782, 1503, 1505, 1596, 1725, 1881
Msp20I	TGGCCA	1 cut(s)	1265
MspA1I	CMGCKG	2 cut(s)	1011, 2288
MspI	CCGG	2 cut(s)	459, 931
MspR9I	CCNGG	4 cut(s)	459, 470, 942, 1044
MunI	CAATTG	3 cut(s)	874, 1070, 1796
MvaI	CCWGG	3 cut(s)	470, 942, 1044
NciI	CCSGG	1 cut(s)	459
NcoI	CCATGG	1 cut(s)	2166
NdeII	GATC	8 cut(s)	97, 256, 465, 484, 1060, 1148, 1619, 2267
NlaIII	CATG	7 cut(s)	482, 1186, 1253, 1316, 1601, 2056, 2170
NlaIV	GGNNCC	7 cut(s)	467, 474, 541, 771, 1545, 1579, 1863
NmuCI	GTSAC	2 cut(s)	234, 1409
OliI	CACNNNNGTG	1 cut(s)	782
PagI	TCATGA	1 cut(s)	1312
PceI	AGGCCT	1 cut(s)	2146
PdmI	GAANNNNTTC	2 cut(s)	1872, 1990
PfeI	GAWTC	2 cut(s)	955, 1801
PflFI	GACNNNGTC	1 cut(s)	2054
PkrI	GCNGC	8 cut(s)	46, 49, 104, 329, 366, 765, 1013, 2299
Ple19I	CGATCG	1 cut(s)	100
PleI	GAGTC	4 cut(s)	228, 616, 1331, 1406
PmaCI	CACGTG	1 cut(s)	867
PmlI	CACGTG	1 cut(s)	867
PpsI	GAGTC	4 cut(s)	228, 616, 1331, 1406
Ppu21I	YACGTR	1 cut(s)	867
PshBI	ATTAAT	1 cut(s)	2073
Psp6I	CCWGG	3 cut(s)	468, 940, 1042
PspCI	CACGTG	1 cut(s)	867
PspEI	GGTNACC	2 cut(s)	440, 944
PspFI	CCCAGC	1 cut(s)	2263
PspGI	CCWGG	3 cut(s)	468, 940, 1042
PspN4I	GGNNCC	7 cut(s)	467, 474, 541, 771, 1545, 1579, 1863
PspOMI	GGGCCC	1 cut(s)	472
PspPI	GGNCC	5 cut(s)	472, 473, 769, 879, 1861
PstI	CTGCAG	3 cut(s)	1016, 1282, 2302
PstNI	CAGNNNCTG	1 cut(s)	1670
PsuI	RGATCY	1 cut(s)	465
PsyI	GACNNNGTC	1 cut(s)	2054
PvuI	CGATCG	1 cut(s)	100
RsaI	GTAC	9 cut(s)	18, 64, 181, 662, 755, 1181, 1202, 1429, 2088
RsaNI	GTAC	9 cut(s)	17, 63, 180, 661, 754, 1180, 1201, 1428, 2087
RseI	CAYNNNNRTG	6 cut(s)	782, 1503, 1505, 1596, 1725, 1881
SaqAI	TTAA	9 cut(s)	141, 617, 789, 1094, 1167, 1467, 1587, 1652, 2073
SatI	GCNGC	8 cut(s)	45, 48, 103, 328, 365, 764, 1012, 2298
Sau3AI	GATC	8 cut(s)	97, 256, 465, 484, 1060, 1148, 1619, 2267
Sau96I	GGNCC	5 cut(s)	472, 473, 769, 879, 1861
ScaI	AGTACT	2 cut(s)	1202, 1429
SchI	GAGTC	4 cut(s)	229, 617, 1332, 1406
ScrFI	CCNGG	4 cut(s)	459, 470, 942, 1044
SduI	GDGCHC	1 cut(s)	476
SfaNI	GCATC	4 cut(s)	630, 922, 1124, 1966
SfcI	CTRYAG	5 cut(s)	1012, 1232, 1278, 1909, 2298
SinI	GGWCC	3 cut(s)	769, 879, 1861
SmiMI	CAYNNNNRTG	6 cut(s)	782, 1503, 1505, 1596, 1725, 1881
SmlI	CTYRAG	1 cut(s)	1289
SmoI	CTYRAG	1 cut(s)	1289
SpeI	ACTAGT	1 cut(s)	182
SseBI	AGGCCT	1 cut(s)	2146
SsiI	CCGC	8 cut(s)	44, 105, 327, 334, 504, 698, 1009, 2286
SspI	AATATT	6 cut(s)	24, 1272, 1365, 1716, 1871, 2071
SspMI	CTAG	7 cut(s)	183, 917, 1751, 1928, 1968, 2090, 2174
StuI	AGGCCT	1 cut(s)	2146
StyD4I	CCNGG	4 cut(s)	457, 468, 940, 1042
StyI	CCWWGG	3 cut(s)	949, 1327, 2166
TaaI	ACNGT	9 cut(s)	92, 139, 179, 604, 665, 784, 1050, 1384, 2024
TaiI	ACGT	3 cut(s)	869, 1908, 2295
TaqI	TCGA	6 cut(s)	436, 1151, 1706, 1723, 1804, 2058
TatI	WGTACW	6 cut(s)	62, 179, 753, 1179, 1200, 1427
TauI	GCSGC	2 cut(s)	47, 330
TfiI	GAWTC	2 cut(s)	955, 1801
Tru1I	TTAA	9 cut(s)	141, 617, 789, 1094, 1167, 1467, 1587, 1652, 2073
Tru9I	TTAA	9 cut(s)	141, 617, 789, 1094, 1167, 1467, 1587, 1652, 2073
TscAI	CASTG	4 cut(s)	142, 359, 607, 1771
TseFI	GTSAC	2 cut(s)	234, 1409
TseI	GCWGC	6 cut(s)	47, 102, 364, 763, 1011, 2297
Tsp45I	GTSAC	2 cut(s)	234, 1409
TspRI	CASTG	4 cut(s)	142, 359, 607, 1771
Tth111I	GACNNNGTC	1 cut(s)	2054
VpaK11BI	GGWCC	3 cut(s)	769, 879, 1861
VspI	ATTAAT	1 cut(s)	2073
XapI	RAATTY	3 cut(s)	595, 1886, 2037
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1635
XmiI	GTMKAC	1 cut(s)	315
XmnI	GAANNNNTTC	2 cut(s)	1872, 1990
XspI	CTAG	7 cut(s)	183, 917, 1751, 1928, 1968, 2090, 2174
ZraI	GACGTC	1 cut(s)	1906
ZrmI	AGTACT	2 cut(s)	1202, 1429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.