FvH4_3g18600

protein At3g15000, mitochondrial-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
11902680 .. 11905234
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18600.t1

Sequence Viewer

Length: 1227 bp
ATGGCGACCCATTTCCTCTCTCGCTCCTTCCCCAAAACCCTAGCCCCTCTCTCCTCCTCCTTCCTCTCCCGCTCCCTCTCCACCGCCACCTCCGCCACCACCGCCACCCTCTCCTCCGCCTACTCCCGCTCCTCCCTCTCCCTCCTCCACCGCCTCCGCCCCCTCGCCGGCGCCGCCATCTCCTCCGCCGGCAAGCTCTCTCCCCCCGTCGTCCGGTGCTTCTCCGCCAACGCCACCACCTCCTCGCTCCGCGATCCCAACCCCAACTGGTCCAACCGCCCTCCCAAGGAGACTATCCTCCTCGATGGCTGCGACTTCGAGCACTGGCTCGTCGTCATGGAGCCGCCGGAGGAGAACACCACCAGGGAGGAACTCATCAAGGAGTACATCAAAACCCTAGCCATGGTCGTCGGCAGTGAAGAAGAAGCGAGGATGAAGATCTACTCTGTTTCCACTAAGTGTTACTTTGCATTTGGTGCACTTGTGTCTGAAGAGCTTTCATACAAACTTAAAGATTTGCCAAAGGTCCGCTGGGTTCTTCCTGATTCGTACTTGGATGTTAAGAACAAAGATTATGGAGGAGAACCTTTTATCAATGGGGAAGCAGTAGCATATGATCCCAAGTACCATGAGGAATGGATAAGAAACAATAGTCGGGCAAACGAGAGAAACAGGCGCAATGATAGACCTAAGAACTTTGACAATTCAAGGAACTTTAACAACAGAAGGGAAAACATGCAGCGCAGAGATTTCCAGAATAGGGGTGCCCCTCCCATGCCTAATCAACCTGGGCCGAATGGCCCTGGCAACGCTGGACCTCCAAACAACATGAGTCCACCCAGTAATATGCCTCCTCCACCTGTGAACGGAGCTCCAATGCCTCCTAACATGAGTGCACCACCAAACTACAACAATGTGCAGCAGCCGAACAACAACTGGGGTGGAGGGCAGCCGACCTACAATCAGGGGCCGCCTAATAACTACAATCAGGGGCCTCCAAACAACTACAATCAGGGGCCTCCAAACAACTACAATCAGGGGCCTCCAAACAACTACAGTCAGGGGCCTCCGAACAACTACAATCAGATGCCTCCAAACAACAATATGAGAGGGCCACCACCGCCACAAATGGGAGGACAACCTGCGCCATCATGGTCTGATCCTGCGCAATACCAAACTAACTATTCACCTGAGAGGGACAATGGTGGTGGTCAAAACCGCTATTGA

Protein Analysis

409

Amino Acids

45.34

Weight (kDa)

9.16

Isoelectric Point (pI)

58.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 106 - 197 3.1e-39 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1167
Acc36I ACCTGC 1 cut(s) 1150
AccB1I GGYRCC 2 cut(s) 170, 764
AccBSI CCGCTC 2 cut(s) 72, 129
AccII CGCG 1 cut(s) 252
AclWI GGATC 3 cut(s) 248, 611, 1154
AcuI CTGAAG 1 cut(s) 510
AcyI GRCGYC 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 459
AfaI GTAC 3 cut(s) 386, 551, 626
AfiI CCNNNNNNNGG 7 cut(s) 167, 213, 286, 403, 760, 866, 1130
AgsI TTSAA 1 cut(s) 708
AjnI CCWGG 3 cut(s) 362, 787, 802
AluBI AGCT 3 cut(s) 196, 496, 872
AluI AGCT 3 cut(s) 196, 496, 872
Alw21I GWGCWC 4 cut(s) 324, 481, 874, 898
Alw26I GTCTC 1 cut(s) 284
Alw44I GTGCAC 2 cut(s) 477, 894
AlwI GGATC 3 cut(s) 248, 611, 1154
AoxI GGCC 8 cut(s) 791, 799, 968, 992, 1016, 1040, 1064, 1112
ApaLI GTGCAC 2 cut(s) 477, 894
ApeKI GCWGC 5 cut(s) 309, 739, 919, 922, 949
AspLEI GCGC 5 cut(s) 173, 678, 744, 1147, 1168
AsuHPI GGTGA 1 cut(s) 1179
AvaII GGWCC 3 cut(s) 270, 526, 815
BaeGI GKGCMC 3 cut(s) 481, 769, 898
BanI GGYRCC 2 cut(s) 170, 764
BanII GRGCYC 1 cut(s) 874
Bbv12I GWGCWC 4 cut(s) 324, 481, 874, 898
BbvI GCAGC 5 cut(s) 296, 751, 931, 934, 961
BccI CCATC 3 cut(s) 185, 299, 1156
BciT130I CCWGG 3 cut(s) 364, 789, 804
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 2 cut(s) 41, 398
BfmI CTRYAG 1 cut(s) 1054
BfoI RGCGCY 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 1150
BglII AGATCT 1 cut(s) 438
BisI GCNGC 8 cut(s) 174, 310, 344, 740, 920, 923, 950, 971
BlsI GCNGC 8 cut(s) 175, 311, 345, 741, 921, 924, 951, 972
Bme1390I CCNGG 3 cut(s) 364, 789, 804
Bme18I GGWCC 3 cut(s) 270, 526, 815
BmiI GGNNCC 8 cut(s) 172, 342, 766, 969, 993, 1017, 1041, 1065
BmrFI CCNGG 3 cut(s) 364, 789, 804
BmrI ACTGGG 2 cut(s) 834, 946
BmsI GCATC 1 cut(s) 1077
BmuI ACTGGG 2 cut(s) 834, 946
BsaBI GATNNNNATC 1 cut(s) 437
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 5 cut(s) 285, 363, 402, 788, 802
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 7 cut(s) 167, 213, 286, 403, 760, 866, 1130
Bse118I RCCGGY 2 cut(s) 167, 188
Bse1I ACTGG 4 cut(s) 272, 329, 840, 941
Bse3DI GCAATG 1 cut(s) 685
Bse8I GATNNNNATC 1 cut(s) 437
BseBI CCWGG 3 cut(s) 364, 789, 804
BseDI CCNNGG 5 cut(s) 285, 363, 402, 788, 802
BseGI GGATG 2 cut(s) 438, 562
BseJI GATNNNNATC 1 cut(s) 437
BseLI CCNNNNNNNGG 7 cut(s) 167, 213, 286, 403, 760, 866, 1130
BseMI GCAATG 1 cut(s) 685
BseMII CTCAG 1 cut(s) 1182
BseNI ACTGG 4 cut(s) 272, 329, 840, 941
BseSI GKGCMC 3 cut(s) 481, 769, 898
BseXI GCAGC 5 cut(s) 296, 751, 931, 934, 961
BseYI CCCAGC 1 cut(s) 531
BsgI GTGCAG 1 cut(s) 938
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 8 cut(s) 793, 801, 970, 994, 1018, 1042, 1066, 1114
BshNI GGYRCC 2 cut(s) 170, 764
BsiHKAI GWGCWC 4 cut(s) 324, 481, 874, 898
BsiSI CCGG 4 cut(s) 168, 189, 214, 347
BslFI GGGAC 1 cut(s) 1211
BslI CCNNNNNNNGG 7 cut(s) 167, 213, 286, 403, 760, 866, 1130
BsmAI GTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 1211
BsnI GGCC 8 cut(s) 793, 801, 970, 994, 1018, 1042, 1066, 1114
Bsp1286I GDGCHC 5 cut(s) 324, 481, 769, 874, 898
Bsp143I GATC 4 cut(s) 253, 438, 616, 1159
Bsp19I CCATGG 1 cut(s) 402
BspANI GGCC 8 cut(s) 793, 801, 970, 994, 1018, 1042, 1066, 1114
BspCNI CTCAG 1 cut(s) 1183
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 8 cut(s) 172, 342, 766, 969, 993, 1017, 1041, 1065
BspMI ACCTGC 1 cut(s) 1150
BspPI GGATC 3 cut(s) 248, 611, 1154
BspQI GCTCTTC 1 cut(s) 486
BspT107I GGYRCC 2 cut(s) 170, 764
BsrBI CCGCTC 2 cut(s) 72, 129
BsrDI GCAATG 1 cut(s) 685
BsrFI RCCGGY 2 cut(s) 167, 188
BsrI ACTGG 4 cut(s) 272, 329, 840, 941
BssAI RCCGGY 2 cut(s) 167, 188
BssECI CCNNGG 5 cut(s) 285, 363, 402, 788, 802
BssMI GATC 4 cut(s) 253, 438, 616, 1159
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 2 cut(s) 285, 402
Bst2UI CCWGG 3 cut(s) 364, 789, 804
Bst4CI ACNGT 1 cut(s) 1058
Bst6I CTCTTC 1 cut(s) 486
BstACI GRCGYC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 3 cut(s) 169, 190, 194
BstDEI CTNAG 3 cut(s) 456, 690, 1191
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 2 cut(s) 438, 562
BstFNI CGCG 1 cut(s) 252
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 5 cut(s) 173, 678, 744, 1147, 1168
BstKTI GATC 4 cut(s) 256, 441, 619, 1162
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 4 cut(s) 253, 438, 616, 1159
BstMWI GCNNNNNNNGC 5 cut(s) 92, 101, 173, 476, 1120
BstNI CCWGG 3 cut(s) 364, 789, 804
BstNSI RCATGY 1 cut(s) 739
BstSCI CCNGG 3 cut(s) 362, 787, 802
BstSFI CTRYAG 1 cut(s) 1054
BstSLI GKGCMC 3 cut(s) 481, 769, 898
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 5 cut(s) 296, 751, 931, 934, 961
BstX2I RGATCY 1 cut(s) 438
BstYI RGATCY 1 cut(s) 438
BsuRI GGCC 8 cut(s) 793, 801, 970, 994, 1018, 1042, 1066, 1114
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 2 cut(s) 438, 562
BtsI GCAGTG 1 cut(s) 421
BtsIMutI CAGTG 2 cut(s) 322, 421
BveI ACCTGC 1 cut(s) 1150
Cac8I GCNNGC 3 cut(s) 169, 190, 194
CfoI GCGC 5 cut(s) 173, 678, 744, 1147, 1168
Cfr10I RCCGGY 2 cut(s) 167, 188
Csp6I GTAC 3 cut(s) 385, 550, 625
CspCI CAANNNNNGTGG 4 cut(s) 922, 957, 1189, 1224
CviAII CATG 8 cut(s) 337, 403, 629, 736, 775, 829, 889, 1152
CviQI GTAC 3 cut(s) 385, 550, 625
DdeI CTNAG 3 cut(s) 456, 690, 1191
DinI GGCGCC 1 cut(s) 172
DpnI GATC 4 cut(s) 255, 440, 618, 1161
DpnII GATC 4 cut(s) 253, 438, 616, 1159
DraIII CACNNNGTG 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
EciI GGCGGA 5 cut(s) 82, 106, 146, 175, 214
Ecl136II GAGCTC 1 cut(s) 872
Eco130I CCWWGG 2 cut(s) 285, 402
Eco24I GRGCYC 1 cut(s) 874
Eco47I GGWCC 3 cut(s) 270, 526, 815
Eco53kI GAGCTC 1 cut(s) 872
Eco57I CTGAAG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 872
EcoO109I RGGNCCY 4 cut(s) 992, 1016, 1040, 1064
EcoRII CCWGG 3 cut(s) 362, 787, 802
EcoT14I CCWWGG 2 cut(s) 285, 402
EcoT38I GRGCYC 1 cut(s) 874
EgeI GGCGCC 1 cut(s) 172
EheI GGCGCC 1 cut(s) 172
ErhI CCWWGG 2 cut(s) 285, 402
FaeI CATG 8 cut(s) 340, 406, 632, 739, 778, 832, 892, 1155
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 1 cut(s) 1211
FatI CATG 8 cut(s) 336, 402, 628, 735, 774, 828, 888, 1151
FauI CCCGC 2 cut(s) 77, 134
FauNDI CATATG 1 cut(s) 613
Fnu4HI GCNGC 8 cut(s) 174, 310, 344, 740, 920, 923, 950, 971
FokI GGATG 2 cut(s) 445, 569
FriOI GRGCYC 1 cut(s) 874
Fsp4HI GCNGC 8 cut(s) 174, 310, 344, 740, 920, 923, 950, 971
FspBI CTAG 2 cut(s) 41, 398
FspI TGCGCA 1 cut(s) 1167
GlaI GCGC 5 cut(s) 172, 677, 743, 1146, 1167
GluI GCNGC 8 cut(s) 174, 310, 344, 740, 920, 923, 950, 971
GsaI CCCAGC 1 cut(s) 535
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 8 cut(s) 793, 801, 970, 994, 1018, 1042, 1066, 1114
HapII CCGG 4 cut(s) 168, 189, 214, 347
HhaI GCGC 5 cut(s) 173, 678, 744, 1147, 1168
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 8 cut(s) 340, 406, 632, 739, 778, 832, 892, 1155
Hin6I GCGC 5 cut(s) 171, 676, 742, 1145, 1166
HinP1I GCGC 5 cut(s) 171, 676, 742, 1145, 1166
HinfI GANTC 2 cut(s) 545, 832
HpaII CCGG 4 cut(s) 168, 189, 214, 347
HphI GGTGA 1 cut(s) 1179
Hpy166II GTNNAC 4 cut(s) 479, 836, 865, 896
Hpy188I TCNGA 4 cut(s) 490, 1071, 1086, 1159
Hpy188III TCNNGA 2 cut(s) 542, 754
Hpy8I GTNNAC 4 cut(s) 479, 836, 865, 896
Hpy99I CGWCG 3 cut(s) 212, 335, 413
HpyAV CCTTC 3 cut(s) 37, 70, 720
HpyCH4III ACNGT 1 cut(s) 1058
HpyCH4V TGCA 5 cut(s) 470, 479, 739, 896, 919
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 101, 173, 476, 1120
HpyF3I CTNAG 3 cut(s) 456, 690, 1191
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 8 cut(s) 340, 406, 632, 739, 778, 832, 892, 1155
HspAI GCGC 5 cut(s) 171, 676, 742, 1145, 1166
KasI GGCGCC 1 cut(s) 170
KroI GCCGGC 2 cut(s) 167, 188
KroNI GCCGGC 2 cut(s) 169, 190
Kzo9I GATC 4 cut(s) 253, 438, 616, 1159
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 7 cut(s) 29, 77, 134, 252, 340, 869, 877
Lsp1109I GCAGC 5 cut(s) 296, 751, 931, 934, 961
LweI GCATC 1 cut(s) 1077
MaeI CTAG 2 cut(s) 41, 398
MaeIII GTNAC 1 cut(s) 461
MalI GATC 4 cut(s) 255, 440, 618, 1161
MbiI CCGCTC 2 cut(s) 72, 129
MboI GATC 4 cut(s) 253, 438, 616, 1159
MboII GAAGA 5 cut(s) 431, 434, 448, 503, 530
MflI RGATCY 1 cut(s) 438
MhlI GDGCHC 5 cut(s) 324, 481, 769, 874, 898
MluCI AATT 1 cut(s) 703
Mly113I GGCGCC 1 cut(s) 171
MlyI GAGTC 1 cut(s) 841
MmeI TCCRAC 1 cut(s) 297
MreI CGCCGGCG 1 cut(s) 167
MroNI GCCGGC 2 cut(s) 167, 188
MseI TTAA 3 cut(s) 510, 561, 717
MspA1I CMGCKG 1 cut(s) 531
MspI CCGG 4 cut(s) 168, 189, 214, 347
MspR9I CCNGG 3 cut(s) 364, 789, 804
MvaI CCWGG 3 cut(s) 364, 789, 804
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 5 cut(s) 92, 101, 173, 476, 1120
NaeI GCCGGC 2 cut(s) 169, 190
NarI GGCGCC 1 cut(s) 171
NcoI CCATGG 1 cut(s) 402
NdeI CATATG 1 cut(s) 613
NdeII GATC 4 cut(s) 253, 438, 616, 1159
NgoMIV GCCGGC 2 cut(s) 167, 188
NlaIII CATG 8 cut(s) 340, 406, 632, 739, 778, 832, 892, 1155
NlaIV GGNNCC 8 cut(s) 172, 342, 766, 969, 993, 1017, 1041, 1065
NsbI TGCGCA 1 cut(s) 1167
NspI RCATGY 1 cut(s) 739
PciSI GCTCTTC 1 cut(s) 486
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PdiI GCCGGC 2 cut(s) 169, 190
PfeI GAWTC 1 cut(s) 545
PkrI GCNGC 8 cut(s) 175, 311, 345, 741, 921, 924, 951, 972
PleI GAGTC 1 cut(s) 840
PluTI GGCGCC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 840
Psp124BI GAGCTC 1 cut(s) 874
Psp6I CCWGG 3 cut(s) 362, 787, 802
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 3 cut(s) 362, 787, 802
PspN4I GGNNCC 8 cut(s) 172, 342, 766, 969, 993, 1017, 1041, 1065
PsuI RGATCY 1 cut(s) 438
RsaI GTAC 3 cut(s) 386, 551, 626
RsaNI GTAC 3 cut(s) 385, 550, 625
SacI GAGCTC 1 cut(s) 874
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 3 cut(s) 510, 561, 717
SatI GCNGC 8 cut(s) 174, 310, 344, 740, 920, 923, 950, 971
Sau3AI GATC 4 cut(s) 253, 438, 616, 1159
SchI GAGTC 1 cut(s) 841
ScrFI CCNGG 3 cut(s) 364, 789, 804
SduI GDGCHC 5 cut(s) 324, 481, 769, 874, 898
SfaNI GCATC 1 cut(s) 1077
SfcI CTRYAG 1 cut(s) 1054
SfoI GGCGCC 1 cut(s) 172
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 3 cut(s) 270, 526, 815
Sse9I AATT 1 cut(s) 703
SspDI GGCGCC 1 cut(s) 170
SspMI CTAG 2 cut(s) 41, 398
SstI GAGCTC 1 cut(s) 874
StyD4I CCNGG 3 cut(s) 362, 787, 802
StyI CCWWGG 2 cut(s) 285, 402
TaaI ACNGT 1 cut(s) 1058
TaqI TCGA 2 cut(s) 303, 318
TasI AATT 1 cut(s) 703
TatI WGTACW 1 cut(s) 384
TauI GCSGC 3 cut(s) 176, 346, 973
TfiI GAWTC 1 cut(s) 545
Tru1I TTAA 3 cut(s) 510, 561, 717
Tru9I TTAA 3 cut(s) 510, 561, 717
TscAI CASTG 2 cut(s) 329, 421
TseI GCWGC 5 cut(s) 309, 739, 919, 922, 949
TspDTI ATGAA 2 cut(s) 449, 489
TspGWI ACGGA 1 cut(s) 882
TspRI CASTG 2 cut(s) 329, 421
VneI GTGCAC 2 cut(s) 477, 894
VpaK11BI GGWCC 3 cut(s) 270, 526, 815
XceI RCATGY 1 cut(s) 739
XcmI CCANNNNNNNNNTGG 1 cut(s) 528
XspI CTAG 2 cut(s) 41, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.