Rh5CG241400

protein At3g15000, mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
25080661 .. 25083345
2685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG241400.1

Sequence Viewer

Length: 1203 bp
ATGGCGACCCATTTCGTCTCTCGCTCCTTCCCCAAAACCCTAGCCCTCTCCTCCTTCCTCTCCCGCTCTCTTTCCACCGCCACCGCCACCGCCTCCACCCTCTCCTCCGCTCACTCCCGCTGCTCTCTCTCCCTCATCAACCGCCTCCGCCCCGTCGCCGGCGCCGGCGCCATCGCCTTTCCGGGCAAGCTCTCTCCCGCCGCCATCCGTTGCTTCTCGGCCAACGCCACCACCTCCTCGCTCCGCGACCCCAACCCCAACTGGTCCAACCGGCCTCCCAAGGAGACTATCCTCCTCGATGGCTGCGACTTCGAGCACTGGCTCGTCGTCATGGAGCCGCCGCCGGAGGGGACCACTAGGGATGACACCATCAAGGAGTACATCAAAACCCTAGCCATGGTCGTCGGAAGTGAGGAAGAAGCGAGGATGAAGATCTACTCTGTTTCAACTAGGTGTTATTTTGCATTTGGTGCACTCGTGTCTGAAGAGCTTTCATACAAAATCAAGGAATTGCCAAAGGTCCGCTGGGTGCTTCCTGATTCGTACCTGGATGTTAAGAACAAAGATTACGGAGGCGAACCTTTTATTAATGGGGAAGCAGTACCATATGATTCCAAGTACCATGAGGAATGGATAAGAAACAACAGTCGGGCAAACGAGAGAAACAGGCGCAATGATAGACCTAGGAACTTTGACAATTCAAGGAACTTCGACAGGAGAAGGGAAAACATGCAGCGCAGAGATGGCCAGAATAGGGGTGCCCCCCCTCCTTTTCCTAATCAACCAGGCCAGCATGGGCCTGGCATGGCCGGACCTCCCAGCAACATGAGTCCACCCAACAATATGCCTCCCCCACCTGTGGACAGGCCTCCAATGCCTCCCAACAACACGAGTGCACCAAACTACAACAATATGCCACAGGCAAGCAACAACTGGGGCGGAGGACAGCCGAACTACAATCAGATGCCTCCAAACAACTACAATCAGGGGTCGCCTAACAACTATAATCAGATGCCTCCAAACAACAATATGCGAGGGCCACCACCACCCCAAAACCACATGGGAGGACCGCCACCACACATGGGAGGACAGCCACCACACATGGGAGGAGGGCAACCTGCGCCATCATGGTCTGATCCTGCACAGTACCAAAATACCTACACACCAGAGAGAGATAATGGTGGTGGTCAAAACCGTTATTGA

Protein Analysis

400

Amino Acids

44.38

Weight (kDa)

9.28

Isoelectric Point (pI)

60.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 104 - 195 1e-37 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1126
AccB1I GGYRCC 3 cut(s) 161, 167, 758
AccBSI CCGCTC 2 cut(s) 66, 110
AccII CGCG 1 cut(s) 246
AclWI GGATC 1 cut(s) 1130
AcoI YGGCCR 3 cut(s) 219, 745, 807
AcuI CTGAAG 1 cut(s) 504
AcyI GRCGYC 2 cut(s) 162, 168
AfaI GTAC 5 cut(s) 380, 545, 603, 620, 1148
AfiI CCNNNNNNNGG 7 cut(s) 158, 347, 397, 754, 859, 1082, 1103
AgsI TTSAA 2 cut(s) 447, 702
AjnI CCWGG 3 cut(s) 546, 784, 799
AluBI AGCT 2 cut(s) 190, 490
AluI AGCT 2 cut(s) 190, 490
Alw21I GWGCWC 3 cut(s) 318, 475, 898
Alw26I GTCTC 2 cut(s) 22, 278
Alw44I GTGCAC 2 cut(s) 471, 894
AlwI GGATC 1 cut(s) 1130
AoxI GGCC 8 cut(s) 219, 272, 745, 787, 797, 807, 866, 1037
ApaLI GTGCAC 2 cut(s) 471, 894
ApeKI GCWGC 3 cut(s) 120, 303, 733
AseI ATTAAT 1 cut(s) 588
AspA2I CCTAGG 1 cut(s) 683
AspLEI GCGC 5 cut(s) 164, 170, 672, 738, 1123
AspS9I GGNCC 7 cut(s) 264, 351, 520, 797, 812, 1037, 1067
AsuC2I CCSGG 1 cut(s) 183
AvaII GGWCC 5 cut(s) 264, 351, 520, 812, 1067
AvrII CCTAGG 1 cut(s) 683
BaeGI GKGCMC 3 cut(s) 475, 763, 898
BalI TGGCCA 1 cut(s) 747
BanI GGYRCC 3 cut(s) 161, 167, 758
BauI CACGAG 2 cut(s) 476, 889
Bbv12I GWGCWC 3 cut(s) 318, 475, 898
BbvI GCAGC 3 cut(s) 107, 290, 745
BccI CCATC 6 cut(s) 179, 212, 293, 377, 737, 1132
BciT130I CCWGG 3 cut(s) 548, 786, 801
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 22, 278
BfaI CTAG 5 cut(s) 41, 357, 392, 450, 684
BfoI RGCGCY 2 cut(s) 165, 171
BfuAI ACCTGC 1 cut(s) 1126
BglII AGATCT 1 cut(s) 432
BisI GCNGC 6 cut(s) 121, 201, 304, 338, 341, 734
BlnI CCTAGG 1 cut(s) 683
BlsI GCNGC 6 cut(s) 122, 202, 305, 339, 342, 735
Bme1390I CCNGG 4 cut(s) 183, 548, 786, 801
Bme18I GGWCC 5 cut(s) 264, 351, 520, 812, 1067
BmgT120I GGNCC 7 cut(s) 264, 351, 520, 797, 812, 1037, 1067
BmiI GGNNCC 5 cut(s) 163, 169, 336, 352, 760
BmrFI CCNGG 4 cut(s) 183, 548, 786, 801
BmrI ACTGGG 1 cut(s) 943
BmsI GCATC 2 cut(s) 954, 1002
BmuI ACTGGG 1 cut(s) 943
BpuMI CCSGG 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 431
BsaHI GRCGYC 2 cut(s) 162, 168
BsaJI CCNNGG 3 cut(s) 279, 396, 683
Bsc4I CCNNNNNNNGG 7 cut(s) 158, 347, 397, 754, 859, 1082, 1103
Bse118I RCCGGY 3 cut(s) 158, 164, 270
Bse1I ACTGG 3 cut(s) 266, 323, 938
Bse3DI GCAATG 1 cut(s) 679
Bse8I GATNNNNATC 1 cut(s) 431
BseBI CCWGG 3 cut(s) 548, 786, 801
BseDI CCNNGG 3 cut(s) 279, 396, 683
BseGI GGATG 4 cut(s) 204, 367, 432, 556
BseJI GATNNNNATC 1 cut(s) 431
BseLI CCNNNNNNNGG 7 cut(s) 158, 347, 397, 754, 859, 1082, 1103
BseMI GCAATG 1 cut(s) 679
BseNI ACTGG 3 cut(s) 266, 323, 938
BseRI GAGGAG 5 cut(s) 40, 94, 226, 284, 1122
BseSI GKGCMC 3 cut(s) 475, 763, 898
BseXI GCAGC 3 cut(s) 107, 290, 745
BseYI CCCAGC 2 cut(s) 525, 818
BsgI GTGCAG 1 cut(s) 1125
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 8 cut(s) 221, 274, 747, 789, 799, 809, 868, 1039
BshNI GGYRCC 3 cut(s) 161, 167, 758
BsiHKAI GWGCWC 3 cut(s) 318, 475, 898
BsiSI CCGG 6 cut(s) 159, 165, 182, 271, 344, 810
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 7 cut(s) 158, 347, 397, 754, 859, 1082, 1103
BsmAI GTCTC 2 cut(s) 22, 278
BsmBI CGTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 8 cut(s) 221, 274, 747, 789, 799, 809, 868, 1039
Bsp1286I GDGCHC 4 cut(s) 318, 475, 763, 898
Bsp143I GATC 2 cut(s) 432, 1135
Bsp19I CCATGG 1 cut(s) 396
BspANI GGCC 8 cut(s) 221, 274, 747, 789, 799, 809, 868, 1039
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 5 cut(s) 163, 169, 336, 352, 760
BspMI ACCTGC 1 cut(s) 1126
BspPI GGATC 1 cut(s) 1130
BspQI GCTCTTC 1 cut(s) 480
BspT107I GGYRCC 3 cut(s) 161, 167, 758
BsrBI CCGCTC 2 cut(s) 66, 110
BsrDI GCAATG 1 cut(s) 679
BsrFI RCCGGY 3 cut(s) 158, 164, 270
BsrI ACTGG 3 cut(s) 266, 323, 938
BssAI RCCGGY 3 cut(s) 158, 164, 270
BssECI CCNNGG 3 cut(s) 279, 396, 683
BssMI GATC 2 cut(s) 432, 1135
BssNI GRCGYC 2 cut(s) 162, 168
BssSI CACGAG 2 cut(s) 476, 889
BssT1I CCWWGG 3 cut(s) 279, 396, 683
Bst2BI CACGAG 2 cut(s) 476, 889
Bst2UI CCWGG 3 cut(s) 548, 786, 801
Bst4CI ACNGT 3 cut(s) 647, 1146, 1196
Bst6I CTCTTC 1 cut(s) 480
BstACI GRCGYC 2 cut(s) 162, 168
BstAPI GCANNNNNTGC 1 cut(s) 470
BstC8I GCNNGC 5 cut(s) 160, 166, 188, 791, 925
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 4 cut(s) 204, 367, 432, 556
BstFNI CGCG 1 cut(s) 246
BstH2I RGCGCY 2 cut(s) 165, 171
BstHHI GCGC 5 cut(s) 164, 170, 672, 738, 1123
BstKTI GATC 2 cut(s) 435, 1138
BstMAI GTCTC 2 cut(s) 22, 278
BstMBI GATC 2 cut(s) 432, 1135
BstMWI GCNNNNNNNGC 4 cut(s) 470, 744, 874, 1120
BstNI CCWGG 3 cut(s) 548, 786, 801
BstNSI RCATGY 1 cut(s) 733
BstSCI CCNGG 4 cut(s) 181, 546, 784, 799
BstSLI GKGCMC 3 cut(s) 475, 763, 898
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 3 cut(s) 107, 290, 745
BstX2I RGATCY 1 cut(s) 432
BstYI RGATCY 1 cut(s) 432
BsuRI GGCC 8 cut(s) 221, 274, 747, 789, 799, 809, 868, 1039
BtgI CCRYGG 1 cut(s) 396
BtgZI GCGATG 1 cut(s) 157
BtsCI GGATG 4 cut(s) 204, 367, 432, 556
BtsIMutI CAGTG 1 cut(s) 316
BveI ACCTGC 1 cut(s) 1126
Cac8I GCNNGC 5 cut(s) 160, 166, 188, 791, 925
CfoI GCGC 5 cut(s) 164, 170, 672, 738, 1123
Cfr10I RCCGGY 3 cut(s) 158, 164, 270
Cfr13I GGNCC 7 cut(s) 264, 351, 520, 797, 812, 1037, 1067
Csp6I GTAC 5 cut(s) 379, 544, 602, 619, 1147
CviQI GTAC 5 cut(s) 379, 544, 602, 619, 1147
DinI GGCGCC 2 cut(s) 163, 169
DpnI GATC 2 cut(s) 434, 1137
DpnII GATC 2 cut(s) 432, 1135
EaeI YGGCCR 3 cut(s) 219, 745, 807
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
EciI GGCGGA 2 cut(s) 137, 954
Eco130I CCWWGG 3 cut(s) 279, 396, 683
Eco147I AGGCCT 1 cut(s) 868
Eco47I GGWCC 5 cut(s) 264, 351, 520, 812, 1067
Eco57I CTGAAG 1 cut(s) 504
EcoRII CCWGG 3 cut(s) 546, 784, 799
EcoT14I CCWWGG 3 cut(s) 279, 396, 683
EgeI GGCGCC 2 cut(s) 163, 169
EheI GGCGCC 2 cut(s) 163, 169
ErhI CCWWGG 3 cut(s) 279, 396, 683
Esp3I CGTCTC 1 cut(s) 22
FaqI GGGAC 1 cut(s) 364
FauI CCCGC 3 cut(s) 71, 125, 205
FauNDI CATATG 1 cut(s) 607
Fnu4HI GCNGC 6 cut(s) 121, 201, 304, 338, 341, 734
FokI GGATG 4 cut(s) 191, 374, 439, 563
Fsp4HI GCNGC 6 cut(s) 121, 201, 304, 338, 341, 734
FspBI CTAG 5 cut(s) 41, 357, 392, 450, 684
GlaI GCGC 5 cut(s) 163, 169, 671, 737, 1122
GluI GCNGC 6 cut(s) 121, 201, 304, 338, 341, 734
GsaI CCCAGC 2 cut(s) 529, 822
HaeII RGCGCY 2 cut(s) 165, 171
HaeIII GGCC 8 cut(s) 221, 274, 747, 789, 799, 809, 868, 1039
HapII CCGG 6 cut(s) 159, 165, 182, 271, 344, 810
HhaI GCGC 5 cut(s) 164, 170, 672, 738, 1123
Hin1I GRCGYC 2 cut(s) 162, 168
Hin6I GCGC 5 cut(s) 162, 168, 670, 736, 1121
HinP1I GCGC 5 cut(s) 162, 168, 670, 736, 1121
HinfI GANTC 3 cut(s) 539, 611, 829
HpaII CCGG 6 cut(s) 159, 165, 182, 271, 344, 810
Hpy166II GTNNAC 4 cut(s) 473, 833, 862, 896
Hpy188I TCNGA 5 cut(s) 407, 484, 963, 1011, 1135
Hpy188III TCNNGA 1 cut(s) 536
Hpy8I GTNNAC 4 cut(s) 473, 833, 862, 896
Hpy99I CGWCG 3 cut(s) 158, 329, 407
HpyAV CCTTC 3 cut(s) 37, 64, 714
HpyCH4III ACNGT 3 cut(s) 647, 1146, 1196
HpyCH4V TGCA 5 cut(s) 464, 473, 733, 896, 1142
HpyF10VI GCNNNNNNNGC 4 cut(s) 470, 744, 874, 1120
Hsp92I GRCGYC 2 cut(s) 162, 168
HspAI GCGC 5 cut(s) 162, 168, 670, 736, 1121
KasI GGCGCC 2 cut(s) 161, 167
KroI GCCGGC 2 cut(s) 158, 164
KroNI GCCGGC 2 cut(s) 160, 166
Kzo9I GATC 2 cut(s) 432, 1135
LguI GCTCTTC 1 cut(s) 480
LmnI GCTCC 3 cut(s) 29, 246, 334
Lsp1109I GCAGC 3 cut(s) 107, 290, 745
LweI GCATC 2 cut(s) 954, 1002
MaeI CTAG 5 cut(s) 41, 357, 392, 450, 684
MalI GATC 2 cut(s) 434, 1137
MbiI CCGCTC 2 cut(s) 66, 110
MboI GATC 2 cut(s) 432, 1135
MboII GAAGA 3 cut(s) 428, 442, 497
MflI RGATCY 1 cut(s) 432
MhlI GDGCHC 4 cut(s) 318, 475, 763, 898
MlsI TGGCCA 1 cut(s) 747
MluCI AATT 2 cut(s) 509, 697
MluNI TGGCCA 1 cut(s) 747
Mly113I GGCGCC 2 cut(s) 162, 168
MlyI GAGTC 1 cut(s) 838
MmeI TCCRAC 2 cut(s) 291, 385
Mox20I TGGCCA 1 cut(s) 747
MreI CGCCGGCG 2 cut(s) 158, 164
MroNI GCCGGC 2 cut(s) 158, 164
MscI TGGCCA 1 cut(s) 747
MseI TTAA 2 cut(s) 555, 588
Msp20I TGGCCA 1 cut(s) 747
MspA1I CMGCKG 2 cut(s) 120, 525
MspI CCGG 6 cut(s) 159, 165, 182, 271, 344, 810
MspR9I CCNGG 4 cut(s) 183, 548, 786, 801
MvaI CCWGG 3 cut(s) 548, 786, 801
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 4 cut(s) 470, 744, 874, 1120
NaeI GCCGGC 2 cut(s) 160, 166
NarI GGCGCC 2 cut(s) 162, 168
NciI CCSGG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 396
NdeI CATATG 1 cut(s) 607
NdeII GATC 2 cut(s) 432, 1135
NgoMIV GCCGGC 2 cut(s) 158, 164
NlaIV GGNNCC 5 cut(s) 163, 169, 336, 352, 760
NmeAIII GCCGAG 1 cut(s) 197
NspI RCATGY 1 cut(s) 733
PceI AGGCCT 1 cut(s) 868
PciSI GCTCTTC 1 cut(s) 480
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PdiI GCCGGC 2 cut(s) 160, 166
PfeI GAWTC 2 cut(s) 539, 611
PkrI GCNGC 6 cut(s) 122, 202, 305, 339, 342, 735
PleI GAGTC 1 cut(s) 837
PluTI GGCGCC 2 cut(s) 165, 171
PpsI GAGTC 1 cut(s) 837
PshBI ATTAAT 1 cut(s) 588
Psp6I CCWGG 3 cut(s) 546, 784, 799
PspFI CCCAGC 2 cut(s) 525, 818
PspGI CCWGG 3 cut(s) 546, 784, 799
PspN4I GGNNCC 5 cut(s) 163, 169, 336, 352, 760
PspPI GGNCC 7 cut(s) 264, 351, 520, 797, 812, 1037, 1067
PsrI GAACNNNNNNTAC 2 cut(s) 551, 583
PsuI RGATCY 1 cut(s) 432
RsaI GTAC 5 cut(s) 380, 545, 603, 620, 1148
RsaNI GTAC 5 cut(s) 379, 544, 602, 619, 1147
SapI GCTCTTC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 555, 588
SatI GCNGC 6 cut(s) 121, 201, 304, 338, 341, 734
Sau3AI GATC 2 cut(s) 432, 1135
Sau96I GGNCC 7 cut(s) 264, 351, 520, 797, 812, 1037, 1067
SchI GAGTC 1 cut(s) 838
ScrFI CCNGG 4 cut(s) 183, 548, 786, 801
SduI GDGCHC 4 cut(s) 318, 475, 763, 898
SfaNI GCATC 2 cut(s) 954, 1002
SfoI GGCGCC 2 cut(s) 163, 169
SgrAI CRCCGGYG 2 cut(s) 158, 164
SinI GGWCC 5 cut(s) 264, 351, 520, 812, 1067
Sse9I AATT 2 cut(s) 509, 697
SseBI AGGCCT 1 cut(s) 868
SspDI GGCGCC 2 cut(s) 161, 167
SspMI CTAG 5 cut(s) 41, 357, 392, 450, 684
StuI AGGCCT 1 cut(s) 868
StyD4I CCNGG 4 cut(s) 181, 546, 784, 799
StyI CCWWGG 3 cut(s) 279, 396, 683
TaaI ACNGT 3 cut(s) 647, 1146, 1196
TaqI TCGA 3 cut(s) 297, 312, 711
TasI AATT 2 cut(s) 509, 697
TatI WGTACW 1 cut(s) 378
TauI GCSGC 3 cut(s) 203, 340, 343
TfiI GAWTC 2 cut(s) 539, 611
Tru1I TTAA 2 cut(s) 555, 588
Tru9I TTAA 2 cut(s) 555, 588
TscAI CASTG 1 cut(s) 323
TseI GCWGC 3 cut(s) 120, 303, 733
TspDTI ATGAA 2 cut(s) 443, 483
TspGWI ACGGA 2 cut(s) 197, 585
TspRI CASTG 1 cut(s) 323
VneI GTGCAC 2 cut(s) 471, 894
VpaK11BI GGWCC 5 cut(s) 264, 351, 520, 812, 1067
VspI ATTAAT 1 cut(s) 588
XceI RCATGY 1 cut(s) 733
XcmI CCANNNNNNNNNTGG 2 cut(s) 522, 797
XmaJI CCTAGG 1 cut(s) 683
XspI CTAG 5 cut(s) 41, 357, 392, 450, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.