AT1G54770

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006753
Physical Location & Seq
Forward (+)
20434550 .. 20436453
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54770.1

Sequence Viewer

Length: 570 bp
ATGGCAGAGACTAAACAACCACTGATCGGTCTTAAATGGGAACCAAAGCTTCCAGGCTTATCCTTAGACTTGAAAACTGGTTCAACCAGAAGCAAAACAGCTGAGAGTTCTAAGTCAGAGCTTGTTGATGGTCTTTGTCTTCCACCTAATGATCCAAGGAAGATTAACAAGATGATTAGAAAACAACTCAAAGACACTACTGGTTCTAACTGGTTTGATATGCCTGCTCCAACAATGACTCCTGAGTTGAAAAGAGATCTTCAGTTGCTTAAGTTGAGAACTGTAATGGATCCTGCTCTACACTACAAGAAATCTGTGTCACGGTCTAAACTAGCTGAAAAATATTTCCAGATTGGTACAGTAATTGAACCAGCTGAAGAGTTTTATGGGAGATTGACAAAGAAGAATAGAAAAGCAACTCTTGCTGATGAGTTGGTTTCAGATCCTAAAACTGCTCTCTACAGGAAGCGTAAAGTTAGGGAGATTGAGGAGAAGAGTAGAGCTGTTACGAATAAGAAATGGAATAAAAAGGGAAACCAGTCTAAGAACACAAAGCCAAGAAGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf2

Protein Analysis

189

Amino Acids

21.68

Weight (kDa)

10.13

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf2 PF08698 64 - 158 1.5e-33 Fcf2 pre-rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 146, 284, 297, 437
AcuI CTGAAG 2 cut(s) 245, 396
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 26
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 4 cut(s) 73, 84, 250, 368
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 6 cut(s) 49, 101, 121, 335, 374, 503
AluI AGCT 6 cut(s) 49, 101, 121, 335, 374, 503
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 4 cut(s) 146, 284, 297, 437
BamHI GGATCC 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 131
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 460
BfrI CTTAAG 1 cut(s) 269
BglII AGATCT 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 54
BmiI GGNNCC 2 cut(s) 42, 291
BmrFI CCNGG 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 4 cut(s) 82, 205, 215, 538
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 2 cut(s) 93, 234
BseNI ACTGG 4 cut(s) 82, 205, 215, 538
BseRI GAGGAG 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 2
Bsp143I GATC 5 cut(s) 24, 151, 256, 289, 442
BspCNI CTCAG 2 cut(s) 94, 235
BspLI GGNNCC 2 cut(s) 42, 291
BspPI GGATC 4 cut(s) 146, 284, 297, 437
BspTI CTTAAG 1 cut(s) 269
BsrI ACTGG 4 cut(s) 82, 205, 215, 538
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 5 cut(s) 24, 151, 256, 289, 442
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 3 cut(s) 283, 324, 361
Bst6I CTCTTC 2 cut(s) 372, 488
BstAFI CTTAAG 1 cut(s) 269
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 5 cut(s) 64, 102, 111, 243, 543
BstKTI GATC 5 cut(s) 27, 154, 259, 292, 445
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 5 cut(s) 24, 151, 256, 289, 442
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstSFI CTRYAG 1 cut(s) 460
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 3 cut(s) 256, 289, 442
BstYI RGATCY 3 cut(s) 256, 289, 442
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 357
CviJI RGCY 8 cut(s) 49, 57, 101, 121, 335, 374, 503, 556
CviKI_1 RGCY 8 cut(s) 49, 57, 101, 121, 335, 374, 503, 556
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 5 cut(s) 64, 102, 111, 243, 543
DpnI GATC 5 cut(s) 26, 153, 258, 291, 444
DpnII GATC 5 cut(s) 24, 151, 256, 289, 442
Eam1104I CTCTTC 2 cut(s) 372, 488
EarI CTCTTC 2 cut(s) 372, 488
Eco130I CCWWGG 1 cut(s) 155
Eco57I CTGAAG 2 cut(s) 245, 396
EcoRII CCWGG 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 155
FaiI YATR 2 cut(s) 221, 387
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FspBI CTAG 1 cut(s) 332
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 118, 442
Hpy188III TCNNGA 2 cut(s) 242, 349
HpyAV CCTTC 1 cut(s) 555
HpyCH4III ACNGT 3 cut(s) 283, 324, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 5 cut(s) 64, 102, 111, 243, 543
Kzo9I GATC 5 cut(s) 24, 151, 256, 289, 442
LmnI GCTCC 1 cut(s) 232
MaeI CTAG 1 cut(s) 332
MaeIII GTNAC 2 cut(s) 318, 505
MalI GATC 5 cut(s) 26, 153, 258, 291, 444
MboI GATC 5 cut(s) 24, 151, 256, 289, 442
MboII GAAGA 6 cut(s) 131, 172, 251, 389, 415, 505
MflI RGATCY 3 cut(s) 256, 289, 442
MluCI AATT 1 cut(s) 363
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 1 cut(s) 481
MseI TTAA 3 cut(s) 33, 165, 270
MspA1I CMGCKG 2 cut(s) 101, 374
MspCI CTTAAG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 422
NdeII GATC 5 cut(s) 24, 151, 256, 289, 442
NlaIV GGNNCC 2 cut(s) 42, 291
NmuCI GTSAC 1 cut(s) 318
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 2 cut(s) 42, 291
PsuI RGATCY 3 cut(s) 256, 289, 442
PvuII CAGCTG 2 cut(s) 101, 374
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
SaqAI TTAA 3 cut(s) 33, 165, 270
Sau3AI GATC 5 cut(s) 24, 151, 256, 289, 442
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 54
SetI ASST 7 cut(s) 51, 103, 123, 148, 337, 376, 505
SfcI CTRYAG 1 cut(s) 460
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 1 cut(s) 363
SspI AATATT 1 cut(s) 344
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 52
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 3 cut(s) 283, 324, 361
TaqII GACCGA 1 cut(s) 17
TasI AATT 1 cut(s) 363
Tru1I TTAA 3 cut(s) 33, 165, 270
Tru9I TTAA 3 cut(s) 33, 165, 270
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 318
Tsp45I GTSAC 1 cut(s) 318
TspRI CASTG 1 cut(s) 27
Vha464I CTTAAG 1 cut(s) 269
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.