Rh4AG274300

rRNA-processing protein fcf2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0006753
Physical Location & Seq
Reverse (-)
59057828 .. 59062228
4401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG274300.1

Sequence Viewer

Length: 477 bp
ATGGCGGATATCAAAGCAGTAGTTGGTCTCTCATGGGAGCCAAAGATTCCGAATTTTTCATCGGCAACCAAACCTAGACTTGGAGTTGATGCAAAACCTCAAGAAACCAATCATCTTTGGAAACCCGCCACCCAGCTTGTGGATGGCCTCTTTGTGCCACCCAATAACCCCAAAACGCTGAACAAGTTGCAGAGGAAGCAACTCAAAGACACGACTGGCTCGAATTGGTTTGACATGCCTGCACCAACCATGACCCCAGAGTTGCAGAAAGATCTCCAATTACTCAAGTTAAGGAGTGTCATGGATCCAAAGAGACACTACAAGAAGGGTGATTCGCAAACTTCCAAGTATTTCCAGGTGGGAACAGTGGTAGAGTCCTCATCAGAATTCTTCTCAGGTAGACTAACAAAGAAGGAAAGGAAGGCAACCGTTGCAGAGGAGTTGCTTTCTGATCCTGCCCTTGCGACCTACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf2

Protein Analysis

158

Amino Acids

17.8

Weight (kDa)

9.7

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf2 PF08698 69 - 157 5.8e-36 Fcf2 pre-rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 139
AccI GTMKAC 1 cut(s) 400
AciI CCGC 2 cut(s) 5, 126
AclWI GGATC 3 cut(s) 299, 312, 446
AcsI RAATTY 2 cut(s) 52, 386
AfiI CCNNNNNNNGG 2 cut(s) 80, 139
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 2 cut(s) 32, 307
AlwI GGATC 3 cut(s) 299, 312, 446
AoxI GGCC 1 cut(s) 145
ApoI RAATTY 2 cut(s) 52, 386
AsuHPI GGTGA 1 cut(s) 341
BamHI GGATCC 1 cut(s) 304
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 356
BcoDI GTCTC 2 cut(s) 32, 307
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 469
BglII AGATCT 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 356
BmiI GGNNCC 2 cut(s) 39, 306
BmrFI CCNGG 1 cut(s) 356
BmsI GCATC 1 cut(s) 79
BpuEI CTTGAG 2 cut(s) 84, 269
BsaI GGTCTC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 139
Bse1I ACTGG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 356
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 80, 139
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 452
BseYI CCCAGC 1 cut(s) 132
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 1 cut(s) 147
BslI CCNNNNNNNGG 2 cut(s) 80, 139
BsmAI GTCTC 2 cut(s) 32, 307
BsnI GGCC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 32
Bsp143I GATC 3 cut(s) 271, 304, 451
BspACI CCGC 2 cut(s) 5, 126
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 407
BspLI GGNNCC 2 cut(s) 39, 306
BspPI GGATC 3 cut(s) 299, 312, 446
BspTNI GGTCTC 1 cut(s) 32
BsrI ACTGG 1 cut(s) 220
BssMI GATC 3 cut(s) 271, 304, 451
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 367, 430
BstAPI GCANNNNNTGC 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 394
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 3 cut(s) 274, 307, 454
BstMAI GTCTC 2 cut(s) 32, 307
BstMBI GATC 3 cut(s) 271, 304, 451
BstMWI GCNNNNNNNGC 2 cut(s) 196, 431
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 1 cut(s) 469
BstX2I RGATCY 2 cut(s) 271, 304
BstYI RGATCY 2 cut(s) 271, 304
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 240
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 4 cut(s) 33, 235, 250, 301
CviJI RGCY 4 cut(s) 40, 136, 147, 219
CviKI_1 RGCY 4 cut(s) 40, 136, 147, 219
DdeI CTNAG 1 cut(s) 394
DpnI GATC 3 cut(s) 273, 306, 453
DpnII GATC 3 cut(s) 271, 304, 451
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 32
Eco32I GATATC 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 354
EcoRV GATATC 1 cut(s) 10
FaeI CATG 4 cut(s) 36, 238, 253, 304
FaiI YATR 4 cut(s) 34, 236, 251, 302
FatI CATG 4 cut(s) 32, 234, 249, 300
FauI CCCGC 1 cut(s) 133
FblI GTMKAC 1 cut(s) 400
FokI GGATG 1 cut(s) 155
FspBI CTAG 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 136
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 4 cut(s) 36, 238, 253, 304
HinfI GANTC 3 cut(s) 46, 332, 374
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 3 cut(s) 51, 385, 451
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 401
HpyAV CCTTC 3 cut(s) 319, 406, 415
HpyCH4III ACNGT 2 cut(s) 367, 430
HpyCH4V TGCA 5 cut(s) 92, 190, 242, 265, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 431
HpyF3I CTNAG 1 cut(s) 394
Hsp92II CATG 4 cut(s) 36, 238, 253, 304
Kzo9I GATC 3 cut(s) 271, 304, 451
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 9 cut(s) 146, 201, 252, 270, 341, 368, 381, 457, 468
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 75
MalI GATC 3 cut(s) 273, 306, 453
MboI GATC 3 cut(s) 271, 304, 451
MboII GAAGA 1 cut(s) 382
MflI RGATCY 2 cut(s) 271, 304
MluCI AATT 4 cut(s) 52, 223, 278, 386
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 5 cut(s) 108, 158, 186, 388, 430
MseI TTAA 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 196, 431
NdeII GATC 3 cut(s) 271, 304, 451
NlaIII CATG 4 cut(s) 36, 238, 253, 304
NlaIV GGNNCC 2 cut(s) 39, 306
NspI RCATGY 1 cut(s) 238
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PfeI GAWTC 2 cut(s) 46, 332
PflMI CCANNNNNTGG 1 cut(s) 139
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 2 cut(s) 39, 306
PsuI RGATCY 2 cut(s) 271, 304
SaqAI TTAA 1 cut(s) 290
Sau3AI GATC 3 cut(s) 271, 304, 451
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 356
SetI ASST 7 cut(s) 76, 100, 138, 360, 400, 470, 476
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 469
SmlI CTYRAG 2 cut(s) 99, 284
SmoI CTYRAG 2 cut(s) 99, 284
Sse9I AATT 4 cut(s) 52, 223, 278, 386
SsiI CCGC 2 cut(s) 5, 126
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 367, 430
TaqI TCGA 1 cut(s) 221
TasI AATT 4 cut(s) 52, 223, 278, 386
TfiI GAWTC 2 cut(s) 46, 332
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 1 cut(s) 372
TspDTI ATGAA 1 cut(s) 48
TspRI CASTG 1 cut(s) 372
Van91I CCANNNNNTGG 1 cut(s) 139
XapI RAATTY 2 cut(s) 52, 386
XceI RCATGY 1 cut(s) 238
XcmI CCANNNNNNNNNTGG 2 cut(s) 136, 140
XmiI GTMKAC 1 cut(s) 400
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.