Rh4BG280000

rRNA-processing protein fcf2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0006753
Physical Location & Seq
Reverse (-)
45429688 .. 45433686
3999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG280000.1

Sequence Viewer

Length: 600 bp
ATGCATTGTGTTTTTAGAATGGCGGATATCAAAGCAGTAGTTGGTCTCTCATGGGAGCCAAAGATTCCGAATTTTTCATCGGCAACCAAACCTAGACTTGGAGTTGATGCAAAACCTCAAGAAACCAATCATCTTTGGAAACCCGCCACCCAGCTTGTGGATGGCCTCTTTGTGCCACCCAATAACCCCAAAACGCTGAACAAGTTGCAGAGGAAGCAACTCAAAGACACGACTGGCTCGAATTGGTTTGACATGCCTGCACCAACCATGACCCCAGAGTTGCAGAAAGATCTCCAATTACTCAAGTTAAGGAGTGTCATGGATCCAAAGAGACACTACAAGAAGGGTGATTCGCAAACTTCCAAGTATTTCCAGGTGGGAACAGTGGTAGAGTCCTCATCAGAATTCTTCTCAGGTAGACTAACAAAGAAGGAAAGGAAGGCAACCGTTGCAGAGGAGTTGCTTTCTGATCCTGCCCTTGCGACCTACAGGAAGCGGAAGGTTCGTGAGATTGAAGAGAAGAATCGACCGGCTGATAATGAAAAATGGAAGAATAAAGGGAAGACGTCCTATAAGCGTGCAAAGCAAAGAAGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf2

Protein Analysis

199

Amino Acids

22.95

Weight (kDa)

10.08

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf2 PF08698 75 - 167 1.8e-37 Fcf2 pre-rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 569
AccB7I CCANNNNNTGG 1 cut(s) 157
AccI GTMKAC 1 cut(s) 418
AciI CCGC 3 cut(s) 23, 144, 496
AclWI GGATC 3 cut(s) 317, 330, 464
AcsI RAATTY 2 cut(s) 70, 404
AcyI GRCGYC 1 cut(s) 566
AfiI CCNNNNNNNGG 2 cut(s) 98, 157
AgsI TTSAA 1 cut(s) 515
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 50, 325
AlwI GGATC 3 cut(s) 317, 330, 464
AoxI GGCC 1 cut(s) 163
ApoI RAATTY 2 cut(s) 70, 404
AsuHPI GGTGA 1 cut(s) 359
BamHI GGATCC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 569
BccI CCATC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 374
BcoDI GTCTC 2 cut(s) 50, 325
BfaI CTAG 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 487
BglII AGATCT 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 57, 324
BmrFI CCNGG 1 cut(s) 374
BmsI GCATC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 569
BpuEI CTTGAG 2 cut(s) 102, 287
BsaHI GRCGYC 1 cut(s) 566
BsaI GGTCTC 1 cut(s) 50
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 157
Bse118I RCCGGY 1 cut(s) 529
Bse1I ACTGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 374
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 2 cut(s) 98, 157
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 470
BseYI CCCAGC 1 cut(s) 150
BsgI GTGCAG 1 cut(s) 243
Bsh1285I CGRYCG 1 cut(s) 530
BshFI GGCC 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 530
BsiSI CCGG 1 cut(s) 530
BslI CCNNNNNNNGG 2 cut(s) 98, 157
BsmAI GTCTC 2 cut(s) 50, 325
BsnI GGCC 1 cut(s) 165
Bso31I GGTCTC 1 cut(s) 50
Bsp143I GATC 3 cut(s) 289, 322, 469
BspACI CCGC 3 cut(s) 23, 144, 496
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 425
BspLI GGNNCC 2 cut(s) 57, 324
BspPI GGATC 3 cut(s) 317, 330, 464
BspTNI GGTCTC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 529
BsrI ACTGG 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 529
BssMI GATC 3 cut(s) 289, 322, 469
BssNI GRCGYC 1 cut(s) 566
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 2 cut(s) 385, 448
Bst6I CTCTTC 1 cut(s) 510
BstACI GRCGYC 1 cut(s) 566
BstAPI GCANNNNNTGC 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 258, 579
BstDEI CTNAG 1 cut(s) 412
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 3 cut(s) 292, 325, 472
BstMAI GTCTC 2 cut(s) 50, 325
BstMBI GATC 3 cut(s) 289, 322, 469
BstMCI CGRYCG 1 cut(s) 530
BstMWI GCNNNNNNNGC 4 cut(s) 214, 449, 583, 592
BstNI CCWGG 1 cut(s) 374
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 487
BstV2I GAAGAC 1 cut(s) 569
BstX2I RGATCY 2 cut(s) 289, 322
BstYI RGATCY 2 cut(s) 289, 322
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 2 cut(s) 258, 579
Cfr10I RCCGGY 1 cut(s) 529
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviAII CATG 4 cut(s) 51, 253, 268, 319
CviJI RGCY 5 cut(s) 58, 154, 165, 237, 533
CviKI_1 RGCY 5 cut(s) 58, 154, 165, 237, 533
DdeI CTNAG 1 cut(s) 412
DpnI GATC 3 cut(s) 291, 324, 471
DpnII GATC 3 cut(s) 289, 322, 469
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
EciI GGCGGA 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 50
Eco32I GATATC 1 cut(s) 28
EcoRI GAATTC 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 372
EcoRV GATATC 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 54, 256, 271, 322
FaiI YATR 5 cut(s) 52, 254, 269, 320, 573
FatI CATG 4 cut(s) 50, 252, 267, 318
FauI CCCGC 1 cut(s) 151
FblI GTMKAC 1 cut(s) 418
FokI GGATG 1 cut(s) 173
FspBI CTAG 1 cut(s) 93
GsaI CCCAGC 1 cut(s) 154
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 530
Hin1I GRCGYC 1 cut(s) 566
Hin1II CATG 4 cut(s) 54, 256, 271, 322
HinfI GANTC 4 cut(s) 64, 350, 392, 523
HpaII CCGG 1 cut(s) 530
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 3 cut(s) 69, 403, 469
Hpy188III TCNNGA 2 cut(s) 119, 506
Hpy8I GTNNAC 1 cut(s) 419
HpyAV CCTTC 5 cut(s) 337, 424, 433, 493, 585
HpyCH4III ACNGT 2 cut(s) 385, 448
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 7 cut(s) 4, 110, 208, 260, 283, 452, 581
HpyF10VI GCNNNNNNNGC 4 cut(s) 214, 449, 583, 592
HpyF3I CTNAG 1 cut(s) 412
HpySE526I ACGT 1 cut(s) 566
Hsp92I GRCGYC 1 cut(s) 566
Hsp92II CATG 4 cut(s) 54, 256, 271, 322
Kzo9I GATC 3 cut(s) 289, 322, 469
LmnI GCTCC 1 cut(s) 55
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 566
MalI GATC 3 cut(s) 291, 324, 471
MboI GATC 3 cut(s) 289, 322, 469
MboII GAAGA 5 cut(s) 400, 527, 532, 562, 574
MflI RGATCY 2 cut(s) 289, 322
MluCI AATT 4 cut(s) 70, 241, 296, 404
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 5 cut(s) 126, 176, 204, 406, 448
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 308
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 4 cut(s) 214, 449, 583, 592
NdeII GATC 3 cut(s) 289, 322, 469
NlaIII CATG 4 cut(s) 54, 256, 271, 322
NlaIV GGNNCC 2 cut(s) 57, 324
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PfeI GAWTC 3 cut(s) 64, 350, 523
PflMI CCANNNNNTGG 1 cut(s) 157
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 150
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 2 cut(s) 57, 324
PsuI RGATCY 2 cut(s) 289, 322
SaqAI TTAA 1 cut(s) 308
Sau3AI GATC 3 cut(s) 289, 322, 469
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 374
SetI ASST 8 cut(s) 94, 118, 156, 378, 418, 488, 504, 569
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 487
SmlI CTYRAG 2 cut(s) 117, 302
SmoI CTYRAG 2 cut(s) 117, 302
Sse9I AATT 4 cut(s) 70, 241, 296, 404
SsiI CCGC 3 cut(s) 23, 144, 496
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 385, 448
TaiI ACGT 1 cut(s) 569
TaqI TCGA 2 cut(s) 239, 526
TasI AATT 4 cut(s) 70, 241, 296, 404
TfiI GAWTC 3 cut(s) 64, 350, 523
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 1 cut(s) 390
TspDTI ATGAA 2 cut(s) 66, 555
TspRI CASTG 1 cut(s) 390
Van91I CCANNNNNTGG 1 cut(s) 157
XapI RAATTY 2 cut(s) 70, 404
XceI RCATGY 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 2 cut(s) 154, 158
XmiI GTMKAC 1 cut(s) 418
XspI CTAG 1 cut(s) 93
ZraI GACGTC 1 cut(s) 567
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.