MD07G1065600.v1.1

rRNA-processing protein fcf2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0006753
Physical Location & Seq
Forward (+)
6208378 .. 6210796
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1065600.v1.1.491

Sequence Viewer

Length: 585 bp
ATGGCGAAAAGCAAGGCGGCGATTGGGCTCTCGTGGGAGCCAAAGTTGCCGGCTTTTTCATCGGCCTCCAAAAATCGAGATGGGTCTGGCTCCAAACCTCGCCCCGAAGCTAATCCGCTTTGGAAACCCAGCACGCAGCTTGTAGATGGCCTCTTCGTTCCGCCGAATGACCCGGTAAAGCGGAACAAATTGGCCAAGAAGCAGATCAAAGACACTGCTGGAACAAGCTGGTTTGACATGCCTGCACCAACCATGACCCCGGAGTTGCAGAAAGATCTCCAATTACTCAAGTTAAGGAATGTTATGGATCCAAAGAGACATTACAAAAAGGGGGATGCACAACCGAACAAGTATTTCCAGGTAGGGACAGTGATAGAGTCCCCATTAGATTTCTTCTCAAGCAGACTTACAAAGAAGGAAAGGAAGGTGTCCCTTGCAGAGGAAGTGCTTTCTGATCGTAACCTTGGCAACTACAGAAAGCGGAAGGTTCGCGAGATAGAAGAGAAAAACCGGCCGGGTGGAAATGAAAAATGGAAGATAAAGGGGAAAGGGTCGTATCAGCGTGCAAAGCAAAGAAGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf2

Protein Analysis

195

Amino Acids

22.14

Weight (kDa)

10.26

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf2 PF08698 70 - 162 1.3e-36 Fcf2 pre-rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 492
AciI CCGC 5 cut(s) 17, 116, 161, 181, 481
AclWI GGATC 2 cut(s) 302, 315
AcoI YGGCCR 2 cut(s) 192, 512
AfiI CCNNNNNNNGG 1 cut(s) 439
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 3 cut(s) 110, 139, 228
AluI AGCT 3 cut(s) 110, 139, 228
Alw26I GTCTC 1 cut(s) 310
AlwI GGATC 2 cut(s) 302, 315
AoxI GGCC 4 cut(s) 63, 148, 192, 512
ApeKI GCWGC 1 cut(s) 136
AsuC2I CCSGG 3 cut(s) 173, 260, 516
BalI TGGCCA 1 cut(s) 194
BamHI GGATCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 30
BauI CACGAG 1 cut(s) 31
BbvI GCAGC 1 cut(s) 148
BccI CCATC 2 cut(s) 74, 140
BciT130I CCWGG 1 cut(s) 359
BcnI CCSGG 3 cut(s) 173, 260, 516
BcoDI GTCTC 1 cut(s) 310
BfmI CTRYAG 1 cut(s) 472
BglII AGATCT 1 cut(s) 274
BisI GCNGC 2 cut(s) 18, 137
BlsI GCNGC 2 cut(s) 19, 138
Bme1390I CCNGG 4 cut(s) 173, 260, 359, 516
BmiI GGNNCC 3 cut(s) 39, 91, 309
BmrFI CCNGG 4 cut(s) 173, 260, 359, 516
BmsI GCATC 1 cut(s) 325
BpuEI CTTGAG 2 cut(s) 272, 382
BpuMI CCSGG 3 cut(s) 173, 260, 516
BsaJI CCNNGG 2 cut(s) 258, 463
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 1 cut(s) 439
Bse118I RCCGGY 2 cut(s) 49, 510
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 2 cut(s) 258, 463
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 439
BseX3I CGGCCG 1 cut(s) 512
BseXI GCAGC 1 cut(s) 148
BseYI CCCAGC 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 492
Bsh1285I CGRYCG 1 cut(s) 515
BshFI GGCC 4 cut(s) 65, 150, 194, 514
BsiEI CGRYCG 1 cut(s) 515
BsiSI CCGG 5 cut(s) 50, 173, 260, 511, 515
BslFI GGGAC 3 cut(s) 364, 379, 415
BslI CCNNNNNNNGG 1 cut(s) 439
BsmAI GTCTC 1 cut(s) 310
BsmFI GGGAC 3 cut(s) 364, 379, 415
BsnI GGCC 4 cut(s) 65, 150, 194, 514
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 4 cut(s) 204, 274, 307, 454
Bsp68I TCGCGA 1 cut(s) 492
BspACI CCGC 5 cut(s) 17, 116, 161, 181, 481
BspANI GGCC 4 cut(s) 65, 150, 194, 514
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 3 cut(s) 39, 91, 309
BspPI GGATC 2 cut(s) 302, 315
BsrFI RCCGGY 2 cut(s) 49, 510
BssAI RCCGGY 2 cut(s) 49, 510
BssECI CCNNGG 2 cut(s) 258, 463
BssMI GATC 4 cut(s) 204, 274, 307, 454
BssSI CACGAG 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 463
Bst2BI CACGAG 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 2 cut(s) 158, 495
BstC8I GCNNGC 4 cut(s) 51, 134, 243, 564
BstENI CCTNNNNNAGG 1 cut(s) 437
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 1 cut(s) 492
BstKTI GATC 4 cut(s) 207, 277, 310, 457
BstMAI GTCTC 1 cut(s) 310
BstMBI GATC 4 cut(s) 204, 274, 307, 454
BstMCI CGRYCG 1 cut(s) 515
BstMWI GCNNNNNNNGC 3 cut(s) 46, 568, 577
BstNI CCWGG 1 cut(s) 359
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 4 cut(s) 171, 258, 357, 514
BstSFI CTRYAG 1 cut(s) 472
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 148
BstX2I RGATCY 2 cut(s) 274, 307
BstYI RGATCY 2 cut(s) 274, 307
BstZI CGGCCG 1 cut(s) 512
BsuRI GGCC 4 cut(s) 65, 150, 194, 514
BtsCI GGATG 1 cut(s) 340
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 213, 375
BtuMI TCGCGA 1 cut(s) 492
Cac8I GCNNGC 4 cut(s) 51, 134, 243, 564
Cfr10I RCCGGY 2 cut(s) 49, 510
CviAII CATG 2 cut(s) 238, 253
DpnI GATC 4 cut(s) 206, 276, 309, 456
DpnII GATC 4 cut(s) 204, 274, 307, 454
EaeI YGGCCR 2 cut(s) 192, 512
EagI CGGCCG 1 cut(s) 512
Eam1104I CTCTTC 2 cut(s) 158, 495
EarI CTCTTC 2 cut(s) 158, 495
EciI GGCGGA 1 cut(s) 150
EclXI CGGCCG 1 cut(s) 512
Eco130I CCWWGG 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 30
Eco52I CGGCCG 1 cut(s) 512
EcoNI CCTNNNNNAGG 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 463
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 463
FaeI CATG 2 cut(s) 241, 256
FaiI YATR 3 cut(s) 239, 254, 305
FaqI GGGAC 3 cut(s) 364, 379, 415
FatI CATG 2 cut(s) 237, 252
Fnu4HI GCNGC 2 cut(s) 18, 137
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 2 cut(s) 18, 137
GluI GCNGC 2 cut(s) 18, 137
GsaI CCCAGC 1 cut(s) 132
HaeIII GGCC 4 cut(s) 65, 150, 194, 514
HapII CCGG 5 cut(s) 50, 173, 260, 511, 515
Hin1II CATG 2 cut(s) 241, 256
HinfI GANTC 1 cut(s) 377
HpaII CCGG 5 cut(s) 50, 173, 260, 511, 515
Hpy188I TCNGA 1 cut(s) 454
Hpy188III TCNNGA 2 cut(s) 77, 491
HpyAV CCTTC 4 cut(s) 409, 418, 478, 570
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4V TGCA 5 cut(s) 245, 268, 338, 437, 566
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 568, 577
Hsp92II CATG 2 cut(s) 241, 256
KroI GCCGGC 1 cut(s) 49
KroNI GCCGGC 1 cut(s) 51
Kzo9I GATC 4 cut(s) 204, 274, 307, 454
LmnI GCTCC 2 cut(s) 37, 95
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 458
MalI GATC 4 cut(s) 206, 276, 309, 456
MboI GATC 4 cut(s) 204, 274, 307, 454
MboII GAAGA 4 cut(s) 145, 385, 512, 547
MflI RGATCY 2 cut(s) 274, 307
MhlI GDGCHC 1 cut(s) 30
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 2 cut(s) 188, 281
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 1 cut(s) 386
MnlI CCTC 4 cut(s) 76, 108, 161, 433
Mox20I TGGCCA 1 cut(s) 194
MroNI GCCGGC 1 cut(s) 49
MscI TGGCCA 1 cut(s) 194
MseI TTAA 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 194
MspI CCGG 5 cut(s) 50, 173, 260, 511, 515
MspR9I CCNGG 4 cut(s) 173, 260, 359, 516
MvaI CCWGG 1 cut(s) 359
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 3 cut(s) 46, 568, 577
NaeI GCCGGC 1 cut(s) 51
NciI CCSGG 3 cut(s) 173, 260, 516
NdeII GATC 4 cut(s) 204, 274, 307, 454
NgoMIV GCCGGC 1 cut(s) 49
NlaIII CATG 2 cut(s) 241, 256
NlaIV GGNNCC 3 cut(s) 39, 91, 309
NruI TCGCGA 1 cut(s) 492
NspI RCATGY 1 cut(s) 241
PdiI GCCGGC 1 cut(s) 51
PkrI GCNGC 2 cut(s) 19, 138
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 357
PspFI CCCAGC 1 cut(s) 128
PspGI CCWGG 1 cut(s) 357
PspN4I GGNNCC 3 cut(s) 39, 91, 309
PsuI RGATCY 2 cut(s) 274, 307
RruI TCGCGA 1 cut(s) 492
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 2 cut(s) 18, 137
Sau3AI GATC 4 cut(s) 204, 274, 307, 454
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 4 cut(s) 173, 260, 359, 516
SduI GDGCHC 1 cut(s) 30
SetI ASST 8 cut(s) 100, 112, 141, 230, 363, 429, 465, 489
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 472
SmlI CTYRAG 2 cut(s) 287, 397
SmoI CTYRAG 2 cut(s) 287, 397
Sse9I AATT 2 cut(s) 188, 281
SsiI CCGC 5 cut(s) 17, 116, 161, 181, 481
StyD4I CCNGG 4 cut(s) 171, 258, 357, 514
StyI CCWWGG 1 cut(s) 463
TaaI ACNGT 1 cut(s) 370
TaqI TCGA 1 cut(s) 76
TasI AATT 2 cut(s) 188, 281
TauI GCSGC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 2 cut(s) 220, 375
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 48, 540
TspRI CASTG 2 cut(s) 220, 375
XagI CCTNNNNNAGG 1 cut(s) 437
XceI RCATGY 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.