AT5G30495

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006753
Physical Location & Seq
Forward (+)
11379907 .. 11381657
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G30495.2

Sequence Viewer

Length: 591 bp
ATGGCAGAGACTAAACCATTGATAGGTCTTACGTGGGAACCAAAGCTTCCAGGCTTATCCTTAGACACGAAAACATGTTCCACTTCAAGCAAAAGAGTTGAGAGTCACGAAAGCAGTTCTCTCTGGATGTCTAAGTCAGAGCTTGTTGATGGTCTTTGTCTTCCTCCTAATGATCCAAAGAAGATTAATAAGATGATTAGGAAACAAATCAAAGACACAACTGGTTCAAACTGGTTTGATATGCCTGCACCAACAATGACTCCGGAGTTGAAAAGAGATCTTCAGTTGCTTAAGTTGAGAACTGTAATGGATCCTGCTGTACACTACAAGAAATCTGTGTCACGGTCAAAGCTAGCTGAAAAATATTTCCAGATTGGTACAGTAATTGAACCAGCTGAAGAGTTCTATGGAAGATTGACTAAGAAGAATAGAAAAGCAACTCTTGCTGATGAGTTGGTTTCAGATCCCAAAGTTTCTCAGTACAGGAAGCGTAAAGTTAAGGAGATTGAGGAGAAGAGTAGAGCTGTTACAAATAAGAAGTGGAAGAAAAAGGGAAACCAAACCACGAACAAAAAGCAAAGAAGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf2

Protein Analysis

196

Amino Acids

22.55

Weight (kDa)

9.98

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf2 PF08698 71 - 165 2.2e-34 Fcf2 pre-rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 262
AclWI GGATC 4 cut(s) 167, 305, 318, 458
AcuI CTGAAG 2 cut(s) 266, 417
AfaI GTAC 3 cut(s) 321, 379, 482
AfiI CCNNNNNNNGG 1 cut(s) 23
AflII CTTAAG 1 cut(s) 290
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 4 cut(s) 87, 228, 271, 389
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 6 cut(s) 46, 142, 352, 356, 395, 524
AluI AGCT 6 cut(s) 46, 142, 352, 356, 395, 524
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 4 cut(s) 167, 305, 318, 458
Aor13HI TCCGGA 1 cut(s) 262
AseI ATTAAT 1 cut(s) 186
AsuNHI GCTAGC 1 cut(s) 352
BamHI GGATCC 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 152
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 353
BfrI CTTAAG 1 cut(s) 290
BglII AGATCT 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 39, 312
BmrFI CCNGG 1 cut(s) 51
BmtI GCTAGC 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 152
BsaAI YACGTR 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 2 cut(s) 226, 236
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 491
BseNI ACTGG 2 cut(s) 226, 236
BseRI GAGGAG 1 cut(s) 524
BsgI GTGCAG 1 cut(s) 231
BsiSI CCGG 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 2
Bsp13I TCCGGA 1 cut(s) 262
Bsp1407I TGTACA 1 cut(s) 319
Bsp143I GATC 4 cut(s) 172, 277, 310, 463
BspCNI CTCAG 1 cut(s) 490
BspEI TCCGGA 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 39, 312
BspOI GCTAGC 1 cut(s) 356
BspPI GGATC 4 cut(s) 167, 305, 318, 458
BspTI CTTAAG 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 319
BsrI ACTGG 2 cut(s) 226, 236
BssMI GATC 4 cut(s) 172, 277, 310, 463
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 304, 345, 382
Bst6I CTCTTC 2 cut(s) 393, 509
BstAFI CTTAAG 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 319
BstBAI YACGTR 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 246, 354
BstDEI CTNAG 4 cut(s) 61, 132, 420, 477
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 4 cut(s) 175, 280, 313, 466
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 4 cut(s) 172, 277, 310, 463
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 3 cut(s) 277, 310, 463
BstYI RGATCY 3 cut(s) 277, 310, 463
BtsCI GGATG 1 cut(s) 132
Cac8I GCNNGC 2 cut(s) 246, 354
Csp6I GTAC 3 cut(s) 320, 378, 481
CviAII CATG 1 cut(s) 75
CviJI RGCY 7 cut(s) 46, 54, 142, 352, 356, 395, 524
CviKI_1 RGCY 7 cut(s) 46, 54, 142, 352, 356, 395, 524
CviQI GTAC 3 cut(s) 320, 378, 481
DdeI CTNAG 4 cut(s) 61, 132, 420, 477
DpnI GATC 4 cut(s) 174, 279, 312, 465
DpnII GATC 4 cut(s) 172, 277, 310, 463
Eam1104I CTCTTC 2 cut(s) 393, 509
EarI CTCTTC 2 cut(s) 393, 509
Eco57I CTGAAG 2 cut(s) 266, 417
EcoRII CCWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 78
FaiI YATR 3 cut(s) 76, 242, 408
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FatI CATG 1 cut(s) 74
FokI GGATG 1 cut(s) 139
FspBI CTAG 1 cut(s) 353
HapII CCGG 1 cut(s) 263
Hin1II CATG 1 cut(s) 78
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 2 cut(s) 103, 259
HpaII CCGG 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 2 cut(s) 139, 463
Hpy188III TCNNGA 4 cut(s) 107, 124, 263, 370
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 576
HpyCH4III ACNGT 3 cut(s) 304, 345, 382
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 4 cut(s) 61, 132, 420, 477
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 1 cut(s) 78
Kpn2I TCCGGA 1 cut(s) 262
Kzo9I GATC 4 cut(s) 172, 277, 310, 463
MaeI CTAG 1 cut(s) 353
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 3 cut(s) 104, 339, 526
MalI GATC 4 cut(s) 174, 279, 312, 465
MboI GATC 4 cut(s) 172, 277, 310, 463
MboII GAAGA 8 cut(s) 152, 193, 272, 410, 423, 436, 526, 556
MflI RGATCY 3 cut(s) 277, 310, 463
MluCI AATT 1 cut(s) 384
MlyI GAGTC 2 cut(s) 112, 253
MnlI CCTC 2 cut(s) 174, 502
MroI TCCGGA 1 cut(s) 262
MseI TTAA 3 cut(s) 186, 291, 498
MspA1I CMGCKG 1 cut(s) 395
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 443
NdeII GATC 4 cut(s) 172, 277, 310, 463
NheI GCTAGC 1 cut(s) 352
NlaIII CATG 1 cut(s) 78
NlaIV GGNNCC 2 cut(s) 39, 312
NmuCI GTSAC 2 cut(s) 104, 339
NspI RCATGY 1 cut(s) 78
PciI ACATGT 1 cut(s) 74
PleI GAGTC 2 cut(s) 111, 253
PpsI GAGTC 2 cut(s) 111, 253
Ppu21I YACGTR 1 cut(s) 33
PscI ACATGT 1 cut(s) 74
PshBI ATTAAT 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 39, 312
PsuI RGATCY 3 cut(s) 277, 310, 463
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 3 cut(s) 321, 379, 482
RsaNI GTAC 3 cut(s) 320, 378, 481
SaqAI TTAA 3 cut(s) 186, 291, 498
Sau3AI GATC 4 cut(s) 172, 277, 310, 463
SchI GAGTC 2 cut(s) 112, 253
ScrFI CCNGG 1 cut(s) 51
SetI ASST 8 cut(s) 28, 35, 48, 144, 354, 358, 397, 526
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 1 cut(s) 384
SspI AATATT 1 cut(s) 365
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 49
TaaI ACNGT 3 cut(s) 304, 345, 382
TaiI ACGT 1 cut(s) 35
TasI AATT 1 cut(s) 384
TatI WGTACW 2 cut(s) 319, 480
Tru1I TTAA 3 cut(s) 186, 291, 498
Tru9I TTAA 3 cut(s) 186, 291, 498
TseFI GTSAC 2 cut(s) 104, 339
Tsp45I GTSAC 2 cut(s) 104, 339
Vha464I CTTAAG 1 cut(s) 290
VspI ATTAAT 1 cut(s) 186
XceI RCATGY 1 cut(s) 78
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.