Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006753

Physical Location & Seq

Genomic Coordinates Reverse (-)

36311933 .. 36312673

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0208400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCCTCTGTTGATGCAATGGCAGCAAGACTTGCCTCCTCCCTTGCTATTGCAGATGGGAAGCGGCCTGTTGATCTGCGTCCGTCCAAGGGACTGCGACAACCAGAGGTTTTTATGCTTGGAAAGTTATTGACTGCAAGGGACTATGCACGCCGGTCTTTCATGGGGATGTTCAGATCTGCATGGAGGACTAATGGTACTCTTCGTATCAATGAGGCGGGTGAAGATGATCGTGTGTTGATTTCCTTCTCGGATCCGATCGACAGGGCTAGGGTTTGGAAGGGCGGTCCGTGGGGTTTCAATCGAGCCCCAATAGCGCTGGTAGAGTATGATGGGGTGAGCCCCGTGATGTCAGTGCCGCTGGAGAAGTCATCCTACTGGATGACGTTACTGGGTGTTCCTCCGGCGTTTAGGTCTGAAAGAATCATGCGTCTTATAGGCAGCACCATCGGGGAGTTTATGGAATTTGACCGGACAGCTTTCCGGACGAGAGTGCTACGAATCCGGGTGGAAATTGCATATGCGACGCCATTGCTGCTCCGACGTCGTTTCTGGGTTGAGAGAGGTAGAGAGGCCGAGGGAGGAAGCGAAGGAGGCTATGTCAGTCTTGAGGTGCTCGATGTTGTTGTTTGTGGGTTTCTTAGATTTCTTTCTGTCCGCCATTGTTGGCTGTGGAAGATTGAAAAAAGAGAGAGAAGATCGATCTGTGGAGAGGGAGAGAGAGAAAAGCAGAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fcf2

Protein Analysis

246

Amino Acids

28.12

Weight (kDa)

10.15

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54770 AT1G54770 AT5G30495 AT5G30495
fragaria_vesca	FvH4_4g21490
malus_domestica	MD07G1065600.v1.1 MD13G1140700.v1.1 MD16G1136700.v1.1
prunus_persica	Prupe.1G105700_v2.0.a1 Prupe.1G105700_v2.0.a1
pyrus_communis	pycom07g05010 pycom13g12220 pycom16g12050
rosa_chinensis	RchiOBHm_Chr4g0427441 RchiOBHm_Chr4g0427481
rosa_laevigata	RLG00000007244
rosa_multiflora	Rmu_sc0000603.1_g000009 Rmu_ssc0000351.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369100
rosa_rugosa	Rorug04G0208400 Rorug04G0218100
rosa_samantha	Rh4AG274300 Rh4BG280000 Rh4CG295100 Rh4DG277400
rosa_wichuraiana	Rw4G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	547
AccIII	TCCGGA	1 cut(s)	483
AciI	CCGC	5 cut(s)	64, 218, 285, 359, 658
AclWI	GGATC	2 cut(s)	248, 261
AcsI	RAATTY	1 cut(s)	464
AcyI	GRCGYC	2 cut(s)	527, 544
AfaI	GTAC	1 cut(s)	199
AfeI	AGCGCT	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	301, 683
AluBI	AGCT	1 cut(s)	479
AluI	AGCT	1 cut(s)	479
Alw21I	GWGCWC	1 cut(s)	618
AlwI	GGATC	2 cut(s)	248, 261
Aor13HI	TCCGGA	1 cut(s)	483
Aor51HI	AGCGCT	1 cut(s)	318
AoxI	GGCC	3 cut(s)	3, 65, 573
ApeKI	GCWGC	3 cut(s)	23, 441, 535
ApoI	RAATTY	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	233, 349
AvaII	GGWCC	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	253
BanII	GRGCYC	2 cut(s)	310, 344
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	3 cut(s)	35, 453, 522
BccI	CCATC	3 cut(s)	50, 326, 455
BcgI	CGANNNNNNTGC	4 cut(s)	430, 464, 514, 548
BcnI	CCSGG	1 cut(s)	506
BfaI	CTAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	320
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	5 cut(s)	24, 65, 359, 442, 536
BlsI	GCNGC	5 cut(s)	25, 66, 360, 443, 537
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	506
BmrI	ACTGGG	1 cut(s)	401
BmsI	GCATC	1 cut(s)	4
BmuI	ACTGGG	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	629
BpuMI	CCSGG	1 cut(s)	506
Bsa29I	ATCGAT	1 cut(s)	701
BsaHI	GRCGYC	2 cut(s)	527, 544
BsaJI	CCNNGG	3 cut(s)	87, 290, 576
BsaWI	WCCGGW	2 cut(s)	471, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	153
Bse1I	ACTGG	2 cut(s)	383, 396
Bse3DI	GCAATG	2 cut(s)	24, 530
BseAI	TCCGGA	1 cut(s)	483
BseCI	ATCGAT	1 cut(s)	701
BseDI	CCNNGG	3 cut(s)	87, 290, 576
BseGI	GGATG	3 cut(s)	174, 371, 387
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	2 cut(s)	24, 530
BseNI	ACTGG	2 cut(s)	383, 396
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	3 cut(s)	35, 453, 522
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	5, 67, 575
BshVI	ATCGAT	1 cut(s)	701
BsiEI	CGRYCG	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	5 cut(s)	154, 404, 472, 484, 505
BslFI	GGGAC	2 cut(s)	105, 155
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	105, 155
BsnI	GGCC	3 cut(s)	5, 67, 575
Bsp1286I	GDGCHC	3 cut(s)	310, 344, 618
Bsp13I	TCCGGA	1 cut(s)	483
Bsp143I	GATC	7 cut(s)	73, 176, 229, 253, 258, 698, 702
BspACI	CCGC	5 cut(s)	64, 218, 285, 359, 658
BspANI	GGCC	3 cut(s)	5, 67, 575
BspDI	ATCGAT	1 cut(s)	701
BspEI	TCCGGA	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	2 cut(s)	248, 261
BsrDI	GCAATG	2 cut(s)	24, 530
BsrFI	RCCGGY	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	383, 396
BssAI	RCCGGY	1 cut(s)	153
BssECI	CCNNGG	3 cut(s)	87, 290, 576
BssMI	GATC	7 cut(s)	73, 176, 229, 253, 258, 698, 702
BssNI	GRCGYC	2 cut(s)	527, 544
BssT1I	CCWWGG	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	2 cut(s)	527, 544
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	641
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	3 cut(s)	174, 371, 387
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	7 cut(s)	76, 179, 232, 256, 261, 701, 705
BstMBI	GATC	7 cut(s)	73, 176, 229, 253, 258, 698, 702
BstMCI	CGRYCG	1 cut(s)	261
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 32, 314, 535, 594
BstSCI	CCNGG	1 cut(s)	504
BstV1I	GCAGC	3 cut(s)	35, 453, 522
BstX2I	RGATCY	2 cut(s)	176, 253
BstYI	RGATCY	2 cut(s)	176, 253
Bsu15I	ATCGAT	1 cut(s)	701
BsuRI	GGCC	3 cut(s)	5, 67, 575
BsuTUI	ATCGAT	1 cut(s)	701
BtgI	CCRYGG	1 cut(s)	290
BtsCI	GGATG	3 cut(s)	174, 371, 387
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	287
ClaI	ATCGAT	1 cut(s)	701
CpoI	CGGWCCG	1 cut(s)	287
CseI	GACGC	3 cut(s)	68, 419, 535
Csp6I	GTAC	1 cut(s)	198
CspI	CGGWCCG	1 cut(s)	287
CviAII	CATG	3 cut(s)	163, 183, 427
CviJI	RGCY	9 cut(s)	5, 67, 269, 308, 342, 479, 575, 597, 670
CviKI_1	RGCY	9 cut(s)	5, 67, 269, 308, 342, 479, 575, 597, 670
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	1 cut(s)	641
DpnI	GATC	7 cut(s)	75, 178, 231, 255, 260, 700, 704
DpnII	GATC	7 cut(s)	73, 176, 229, 253, 258, 698, 702
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	647
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	2 cut(s)	310, 344
Eco47I	GGWCC	1 cut(s)	287
Eco47III	AGCGCT	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	2 cut(s)	310, 344
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	166, 186, 430
FaqI	GGGAC	2 cut(s)	105, 155
FatI	CATG	3 cut(s)	162, 182, 426
FauI	CCCGC	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	5 cut(s)	24, 65, 359, 442, 536
FokI	GGATG	3 cut(s)	181, 358, 394
FriOI	GRGCYC	2 cut(s)	310, 344
Fsp4HI	GCNGC	5 cut(s)	24, 65, 359, 442, 536
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	5 cut(s)	24, 65, 359, 442, 536
GsuI	CTGGAG	1 cut(s)	383
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	3 cut(s)	5, 67, 575
HapII	CCGG	5 cut(s)	154, 404, 472, 484, 505
HgaI	GACGC	3 cut(s)	68, 419, 535
HhaI	GCGC	1 cut(s)	319
Hin1I	GRCGYC	2 cut(s)	527, 544
Hin1II	CATG	3 cut(s)	166, 186, 430
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	2 cut(s)	423, 501
HpaII	CCGG	5 cut(s)	154, 404, 472, 484, 505
HphI	GGTGA	2 cut(s)	233, 349
Hpy188I	TCNGA	5 cut(s)	176, 253, 258, 418, 542
Hpy188III	TCNNGA	2 cut(s)	484, 608
Hpy99I	CGWCG	3 cut(s)	529, 546, 549
HpyAV	CCTTC	3 cut(s)	256, 274, 584
HpyCH4IV	ACGT	2 cut(s)	386, 544
HpyCH4V	TGCA	6 cut(s)	17, 53, 137, 149, 182, 518
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 32, 314, 535, 594
HpyF3I	CTNAG	1 cut(s)	641
HpySE526I	ACGT	2 cut(s)	386, 544
Hsp92I	GRCGYC	2 cut(s)	527, 544
Hsp92II	CATG	3 cut(s)	166, 186, 430
HspAI	GCGC	1 cut(s)	317
Kpn2I	TCCGGA	1 cut(s)	483
Kzo9I	GATC	7 cut(s)	73, 176, 229, 253, 258, 698, 702
LmnI	GCTCC	1 cut(s)	543
Lsp1109I	GCAGC	3 cut(s)	35, 453, 522
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	2 cut(s)	386, 544
MaeIII	GTNAC	1 cut(s)	387
MalI	GATC	7 cut(s)	75, 178, 231, 255, 260, 700, 704
MboI	GATC	7 cut(s)	73, 176, 229, 253, 258, 698, 702
MboII	GAAGA	4 cut(s)	194, 236, 688, 708
MflI	RGATCY	2 cut(s)	176, 253
MhlI	GDGCHC	3 cut(s)	310, 344, 618
MluCI	AATT	2 cut(s)	464, 513
MmeI	TCCRAC	1 cut(s)	565
MroI	TCCGGA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	5 cut(s)	154, 404, 472, 484, 505
MspR9I	CCNGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	5 cut(s)	23, 32, 314, 535, 594
NciI	CCSGG	1 cut(s)	506
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	7 cut(s)	73, 176, 229, 253, 258, 698, 702
NlaIII	CATG	3 cut(s)	166, 186, 430
NlaIV	GGNNCC	1 cut(s)	255
NmeAIII	GCCGAG	1 cut(s)	601
PfeI	GAWTC	2 cut(s)	423, 501
PkrI	GCNGC	5 cut(s)	25, 66, 360, 443, 537
Ple19I	CGATCG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	176, 253
PvuI	CGATCG	1 cut(s)	261
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	167
Rsr2I	CGGWCCG	1 cut(s)	287
RsrII	CGGWCCG	1 cut(s)	287
SatI	GCNGC	5 cut(s)	24, 65, 359, 442, 536
Sau3AI	GATC	7 cut(s)	73, 176, 229, 253, 258, 698, 702
Sau96I	GGNCC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	3 cut(s)	310, 344, 618
SetI	ASST	7 cut(s)	111, 389, 416, 481, 547, 568, 615
SfaNI	GCATC	1 cut(s)	4
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse9I	AATT	2 cut(s)	464, 513
SsiI	CCGC	5 cut(s)	64, 218, 285, 359, 658
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	87
TaiI	ACGT	2 cut(s)	389, 547
TaqI	TCGA	4 cut(s)	261, 304, 618, 701
TasI	AATT	2 cut(s)	464, 513
TauI	GCSGC	2 cut(s)	67, 361
TfiI	GAWTC	2 cut(s)	423, 501
TscAI	CASTG	1 cut(s)	360
TseI	GCWGC	3 cut(s)	23, 441, 535
TspDTI	ATGAA	1 cut(s)	151
TspGWI	ACGGA	2 cut(s)	72, 279
TspRI	CASTG	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	464
XspI	CTAG	1 cut(s)	270
ZraI	GACGTC	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.