FvH4_4g21490

rRNA-processing protein fcf2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006753
Physical Location & Seq
Reverse (-)
24550703 .. 24553492
2790 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21490.t1

Sequence Viewer

Length: 576 bp
ATGACAGAAGCCAAAGCAGTAGTGGGTCTCTCATGGGAACCAAACATTCCGAACTTTTCAGCAAAAACTGGACTTAAAGTCGATGCTAAACCCCAAGAAACCAATCACCGTTGGAAACCCGCCTCCCAGCTTGTGGATGGCCTCTTTGTGCCACCCAATAACCCGAAAACACTGAACAAGTTGCAGAGGAAGCAACTCAAAGACACTACTGGCTCCAATTGGTTTGACATGCCTGCGCCGACTATGACCCCGGAGTTGCAGAAAGATCTCAAGTTGCTCAAGTTAAGGAGTGTCATGGATCCAAAAAGACATTACAAGAAGGGTGATTCGCAAACTGCCAAGTATTTCCAGGTGGGAACAGTGGTAGAGTCGGCATCAGATTTCTTCTCGGGTAGACTAACAAAGAAGGAAAGGAAGGCAACTGTTGCCGAGGAGCTGCTTTCTGATCCTGTGCTTGCGACCTACAGGAAGCGGAAGGTTCGTGAGATTGAAGAGAAGAATCGACCAGCTGATAATGAAAAATGGAAGAATAAAGGGAAGACGTCCTATAAGCGTGCAAAGCAAAGAAGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf2

Protein Analysis

192

Amino Acids

21.96

Weight (kDa)

10.1

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf2 PF08698 67 - 159 1.1e-36 Fcf2 pre-rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 545
AccB7I CCANNNNNTGG 1 cut(s) 133
AccI GTMKAC 1 cut(s) 394
AciI CCGC 2 cut(s) 120, 472
AclWI GGATC 3 cut(s) 293, 306, 440
AcyI GRCGYC 1 cut(s) 542
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 1 cut(s) 491
AhdI GACNNNNNGTC 1 cut(s) 77
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 3 cut(s) 130, 436, 509
AluI AGCT 3 cut(s) 130, 436, 509
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 3 cut(s) 293, 306, 440
Ama87I CYCGRG 1 cut(s) 388
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 436
AspLEI GCGC 1 cut(s) 238
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 98, 335
AvaI CYCGRG 1 cut(s) 388
BamHI GGATCC 1 cut(s) 298
BbsI GAAGAC 1 cut(s) 545
BbvI GCAGC 1 cut(s) 423
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 350
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 463
BglII AGATCT 1 cut(s) 265
BisI GCNGC 1 cut(s) 437
BlsI GCNGC 1 cut(s) 438
Bme1390I CCNGG 2 cut(s) 251, 350
BmeRI GACNNNNNGTC 1 cut(s) 77
BmeT110I CYCGRG 1 cut(s) 388
BmiI GGNNCC 3 cut(s) 39, 214, 300
BmrFI CCNGG 2 cut(s) 251, 350
BmsI GCATC 2 cut(s) 73, 383
BpiI GAAGAC 1 cut(s) 545
BpuEI CTTGAG 2 cut(s) 254, 263
BpuMI CCSGG 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 542
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 249, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 2 cut(s) 73, 214
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 249, 429
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 133
BseNI ACTGG 2 cut(s) 73, 214
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 1 cut(s) 423
BseYI CCCAGC 1 cut(s) 126
BshFI GGCC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 388
Bsp143I GATC 3 cut(s) 265, 298, 445
BspACI CCGC 2 cut(s) 120, 472
BspANI GGCC 1 cut(s) 141
BspLI GGNNCC 3 cut(s) 39, 214, 300
BspPI GGATC 3 cut(s) 293, 306, 440
BspTNI GGTCTC 1 cut(s) 32
BsrI ACTGG 2 cut(s) 73, 214
BssECI CCNNGG 2 cut(s) 249, 429
BssMI GATC 3 cut(s) 265, 298, 445
BssNI GRCGYC 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 3 cut(s) 110, 361, 424
Bst6I CTCTTC 1 cut(s) 486
BstACI GRCGYC 1 cut(s) 542
BstAPI GCANNNNNTGC 1 cut(s) 425
BstC8I GCNNGC 3 cut(s) 234, 456, 555
BstF5I GGATG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 3 cut(s) 268, 301, 448
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 3 cut(s) 265, 298, 445
BstMWI GCNNNNNNNGC 4 cut(s) 190, 425, 559, 568
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 2 cut(s) 249, 348
BstSFI CTRYAG 1 cut(s) 463
BstV1I GCAGC 1 cut(s) 423
BstV2I GAAGAC 1 cut(s) 545
BstX2I RGATCY 2 cut(s) 265, 298
BstYI RGATCY 2 cut(s) 265, 298
BsuRI GGCC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 170, 366
Cac8I GCNNGC 3 cut(s) 234, 456, 555
CfoI GCGC 1 cut(s) 238
CviAII CATG 3 cut(s) 33, 229, 295
CviJI RGCY 6 cut(s) 11, 130, 141, 213, 436, 509
CviKI_1 RGCY 6 cut(s) 11, 130, 141, 213, 436, 509
DpnI GATC 3 cut(s) 267, 300, 447
DpnII GATC 3 cut(s) 265, 298, 445
DriI GACNNNNNGTC 1 cut(s) 77
Eam1104I CTCTTC 1 cut(s) 486
Eam1105I GACNNNNNGTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 348
FaeI CATG 3 cut(s) 36, 232, 298
FaiI YATR 5 cut(s) 34, 230, 245, 296, 549
FatI CATG 3 cut(s) 32, 228, 294
FauI CCCGC 1 cut(s) 127
FblI GTMKAC 1 cut(s) 394
Fnu4HI GCNGC 1 cut(s) 437
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 437
GlaI GCGC 1 cut(s) 237
GluI GCNGC 1 cut(s) 437
GsaI CCCAGC 1 cut(s) 130
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 251
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 542
Hin1II CATG 3 cut(s) 36, 232, 298
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HinfI GANTC 3 cut(s) 326, 368, 499
HpaII CCGG 1 cut(s) 251
HphI GGTGA 2 cut(s) 98, 335
Hpy166II GTNNAC 1 cut(s) 395
Hpy188I TCNGA 3 cut(s) 51, 379, 445
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 1 cut(s) 395
HpyAV CCTTC 5 cut(s) 313, 400, 409, 469, 561
HpyCH4III ACNGT 3 cut(s) 110, 361, 424
HpyCH4IV ACGT 1 cut(s) 542
HpyCH4V TGCA 3 cut(s) 184, 259, 557
HpyF10VI GCNNNNNNNGC 4 cut(s) 190, 425, 559, 568
HpySE526I ACGT 1 cut(s) 542
Hsp92I GRCGYC 1 cut(s) 542
Hsp92II CATG 3 cut(s) 36, 232, 298
HspAI GCGC 1 cut(s) 236
Kzo9I GATC 3 cut(s) 265, 298, 445
LmnI GCTCC 2 cut(s) 218, 433
Lsp1109I GCAGC 1 cut(s) 423
LweI GCATC 2 cut(s) 73, 383
MaeII ACGT 1 cut(s) 542
MalI GATC 3 cut(s) 267, 300, 447
MboI GATC 3 cut(s) 265, 298, 445
MboII GAAGA 5 cut(s) 376, 503, 508, 538, 550
MfeI CAATTG 1 cut(s) 217
MflI RGATCY 2 cut(s) 265, 298
MluCI AATT 1 cut(s) 217
MlyI GAGTC 1 cut(s) 377
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 4 cut(s) 133, 152, 180, 424
MseI TTAA 2 cut(s) 75, 284
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 2 cut(s) 251, 350
MunI CAATTG 1 cut(s) 217
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 4 cut(s) 190, 425, 559, 568
NciI CCSGG 1 cut(s) 251
NdeII GATC 3 cut(s) 265, 298, 445
NlaIII CATG 3 cut(s) 36, 232, 298
NlaIV GGNNCC 3 cut(s) 39, 214, 300
NmeAIII GCCGAG 1 cut(s) 454
NspI RCATGY 1 cut(s) 232
PfeI GAWTC 2 cut(s) 326, 499
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 1 cut(s) 438
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 126
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 3 cut(s) 39, 214, 300
PsuI RGATCY 2 cut(s) 265, 298
PvuII CAGCTG 1 cut(s) 509
SaqAI TTAA 2 cut(s) 75, 284
SatI GCNGC 1 cut(s) 437
Sau3AI GATC 3 cut(s) 265, 298, 445
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 2 cut(s) 251, 350
SetI ASST 7 cut(s) 132, 354, 438, 464, 480, 511, 545
SfaNI GCATC 2 cut(s) 73, 383
SfcI CTRYAG 1 cut(s) 463
SmlI CTYRAG 2 cut(s) 269, 278
SmoI CTYRAG 2 cut(s) 269, 278
Sse9I AATT 1 cut(s) 217
SsiI CCGC 2 cut(s) 120, 472
StyD4I CCNGG 2 cut(s) 249, 348
TaaI ACNGT 3 cut(s) 110, 361, 424
TaiI ACGT 1 cut(s) 545
TaqI TCGA 2 cut(s) 81, 502
TasI AATT 1 cut(s) 217
TfiI GAWTC 2 cut(s) 326, 499
Tru1I TTAA 2 cut(s) 75, 284
Tru9I TTAA 2 cut(s) 75, 284
TscAI CASTG 2 cut(s) 177, 366
TseI GCWGC 1 cut(s) 436
TspDTI ATGAA 1 cut(s) 531
TspRI CASTG 2 cut(s) 177, 366
Van91I CCANNNNNTGG 1 cut(s) 133
XceI RCATGY 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 2 cut(s) 19, 134
XmiI GTMKAC 1 cut(s) 394
ZraI GACGTC 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.