Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006753

Physical Location & Seq

Genomic Coordinates Forward (+)

8398744 .. 8400058

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g12050.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGGAAACCAAGGCGGCGATTGGGCTCTGGTGGGAGCCAAAGTTGCCGGCTTTTTCATCTACTTTAAAAAATGGAGGTGGGTCTGGCTCCAAACCTCGCCCCGAAGCCAATCCGCTTTGGAAACCCAGCACGCAGCTTGTCGATGGCATCTTCGTTCCGCCGAATGACCTGGTAAAGCGGAACAAATTGGCCAAGAAGCAGATCAAAGATACTGCTGGAACAGCTGGTATGTCATCTGCTCAATTCACTAAGTTTGACATGCCTGCACCAACCATGACCCCGGAGTTGCAGAAAGACCTCCAATTACTCAAGAGTTTTAAGGAATGTTATGGATCCAAAGAGACATTACAAAAAGGGGGATGCACAACCGAACAAGTATTTCCAGGTAGGGACAGTGATAGAGTCCCCATTGGATTTCTTCTCGAGCAGACTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fcf2

Protein Analysis

147

Amino Acids

15.94

Weight (kDa)

9.1

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54770 AT1G54770 AT5G30495 AT5G30495
fragaria_vesca	FvH4_4g21490
malus_domestica	MD07G1065600.v1.1 MD13G1140700.v1.1 MD16G1136700.v1.1
prunus_persica	Prupe.1G105700_v2.0.a1 Prupe.1G105700_v2.0.a1
pyrus_communis	pycom07g05010 pycom13g12220 pycom16g12050
rosa_chinensis	RchiOBHm_Chr4g0427441 RchiOBHm_Chr4g0427481
rosa_laevigata	RLG00000007244
rosa_multiflora	Rmu_sc0000603.1_g000009 Rmu_ssc0000351.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369100
rosa_rugosa	Rorug04G0208400 Rorug04G0218100
rosa_samantha	Rh4AG274300 Rh4BG280000 Rh4CG295100 Rh4DG277400
rosa_wichuraiana	Rw4G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 17, 116, 161, 181
AclWI	GGATC	2 cut(s)	330, 343
AcoI	YGGCCR	1 cut(s)	192
AjnI	CCWGG	2 cut(s)	171, 385
AluBI	AGCT	2 cut(s)	139, 227
AluI	AGCT	2 cut(s)	139, 227
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	330, 343
Ama87I	CYCGRG	1 cut(s)	425
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	425
BalI	TGGCCA	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	2 cut(s)	173, 387
BcnI	CCSGG	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	338
BisI	GCNGC	2 cut(s)	18, 137
BlsI	GCNGC	2 cut(s)	19, 138
Bme1390I	CCNGG	3 cut(s)	173, 284, 387
BmeT110I	CYCGRG	1 cut(s)	425
BmiI	GGNNCC	3 cut(s)	39, 91, 337
BmrFI	CCNGG	3 cut(s)	173, 284, 387
BmsI	GCATC	2 cut(s)	159, 353
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	12, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bse118I	RCCGGY	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	173, 387
BseDI	CCNNGG	2 cut(s)	12, 282
BseGI	GGATG	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	194
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	2 cut(s)	50, 284
BslFI	GGGAC	2 cut(s)	392, 407
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	2 cut(s)	392, 407
BsnI	GGCC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	204, 335
BspACI	CCGC	5 cut(s)	5, 17, 116, 161, 181
BspANI	GGCC	1 cut(s)	194
BspLI	GGNNCC	3 cut(s)	39, 91, 337
BspPI	GGATC	2 cut(s)	330, 343
BsrFI	RCCGGY	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	12, 282
BssMI	GATC	2 cut(s)	204, 335
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	173, 387
Bst4CI	ACNGT	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	51, 134, 267
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	368
BstKTI	GATC	2 cut(s)	207, 338
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	2 cut(s)	204, 335
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 224
BstNI	CCWGG	2 cut(s)	173, 387
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	3 cut(s)	171, 282, 385
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	3 cut(s)	51, 134, 267
Cfr10I	RCCGGY	1 cut(s)	49
CsiI	ACCWGGT	1 cut(s)	171
CviAII	CATG	2 cut(s)	262, 277
CviJI	RGCY	8 cut(s)	28, 40, 53, 90, 110, 139, 194, 227
CviKI_1	RGCY	8 cut(s)	28, 40, 53, 90, 110, 139, 194, 227
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	206, 337
DpnII	GATC	2 cut(s)	204, 335
DraI	TTTAAA	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	192
EciI	GGCGGA	2 cut(s)	20, 150
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	171, 385
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	265, 280
FaiI	YATR	4 cut(s)	233, 263, 278, 333
FaqI	GGGAC	2 cut(s)	392, 407
FatI	CATG	2 cut(s)	261, 276
Fnu4HI	GCNGC	2 cut(s)	18, 137
FokI	GGATG	1 cut(s)	375
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	18, 137
GluI	GCNGC	2 cut(s)	18, 137
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	2 cut(s)	50, 284
Hin1II	CATG	2 cut(s)	265, 280
HinfI	GANTC	1 cut(s)	405
HpaII	CCGG	2 cut(s)	50, 284
Hpy188III	TCNNGA	2 cut(s)	313, 425
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4V	TGCA	3 cut(s)	269, 292, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 224
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	265, 280
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	204, 335
LmnI	GCTCC	2 cut(s)	37, 95
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	2 cut(s)	159, 353
MabI	ACCWGGT	1 cut(s)	171
MalI	GATC	2 cut(s)	206, 337
MboI	GATC	2 cut(s)	204, 335
MboII	GAAGA	2 cut(s)	145, 413
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	3 cut(s)	188, 245, 305
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	414
MnlI	CCTC	3 cut(s)	71, 108, 311
Mox20I	TGGCCA	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	2 cut(s)	68, 321
Msp20I	TGGCCA	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	2 cut(s)	50, 284
MspR9I	CCNGG	3 cut(s)	173, 284, 387
MvaI	CCWGG	2 cut(s)	173, 387
MwoI	GCNNNNNNNGC	2 cut(s)	46, 224
NaeI	GCCGGC	1 cut(s)	51
NciI	CCSGG	1 cut(s)	284
NdeII	GATC	2 cut(s)	204, 335
NgoMIV	GCCGGC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	265, 280
NlaIV	GGNNCC	3 cut(s)	39, 91, 337
NspI	RCATGY	1 cut(s)	265
PaeR7I	CTCGAG	1 cut(s)	425
PdiI	GCCGGC	1 cut(s)	51
PkrI	GCNGC	2 cut(s)	19, 138
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	171, 385
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	2 cut(s)	171, 385
PspN4I	GGNNCC	3 cut(s)	39, 91, 337
PsuI	RGATCY	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	68, 321
SatI	GCNGC	2 cut(s)	18, 137
Sau3AI	GATC	2 cut(s)	204, 335
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	3 cut(s)	173, 284, 387
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	7 cut(s)	82, 100, 141, 174, 229, 303, 391
SexAI	ACCWGGT	1 cut(s)	171
SfaNI	GCATC	2 cut(s)	159, 353
Sfr274I	CTCGAG	1 cut(s)	425
SlaI	CTCGAG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	311, 425
SmoI	CTYRAG	2 cut(s)	311, 425
Sse9I	AATT	3 cut(s)	188, 245, 305
SsiI	CCGC	5 cut(s)	5, 17, 116, 161, 181
StyD4I	CCNGG	3 cut(s)	171, 282, 385
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	398
TaqI	TCGA	2 cut(s)	144, 426
TasI	AATT	3 cut(s)	188, 245, 305
TauI	GCSGC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	68, 321
Tru9I	TTAA	2 cut(s)	68, 321
TscAI	CASTG	1 cut(s)	403
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	403
XceI	RCATGY	1 cut(s)	265
XhoI	CTCGAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.