Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000603.1

Orthogroup ID

OG0006753

Physical Location & Seq

Genomic Coordinates Reverse (-)

37876 .. 41135

Gene Structure 3260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000603.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgggtatgggattttgttggaagttgatgaggtcgaggagggtttggagtggggcggtggcagtcgtgctatgtattggggtggtcggttggaattgcagttaccgaccacctttcgcgaagcagcgacgttggcctcttctccgctcactgattccaatggcggatatcaaagcagtagttggtctctcatgggagccaaagattccgaatttttcatcggcaaccaaacctagacttggagttgatgcaaaacctcaagaaaccaatcatctttggaaaccccccacccagcttgtggatggcctctttgtgccacccaataaccccaaaacgctgaacaagttgcagaggaagcaactcaaagacacaactggctcgaattggtttgacatgcctgcaccaaccatgaccccggagttgcagaaagatctccaattactcaagttaaggagtgtcatggatccaaagagacactacaagaagggtgattcgcaaacttccaagtatttccaggtgggaacggtggtagagtcctcatcagaattcttctcaggtagactaacaaagaaggaaaggaaggcaaccgttgcagaggagctgctttctgatcctgcccttgcgacctacaggaagcggaaggttcgtgagatcgaagagaagaatcgaccggctgataatgaaaaatggaagaataaagggaagacgtcctataagcgtgcaaagcaaagaaggcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fcf2

Protein Analysis

246

Amino Acids

28.32

Weight (kDa)

10.31

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54770 AT1G54770 AT5G30495 AT5G30495
fragaria_vesca	FvH4_4g21490
malus_domestica	MD07G1065600.v1.1 MD13G1140700.v1.1 MD16G1136700.v1.1
prunus_persica	Prupe.1G105700_v2.0.a1 Prupe.1G105700_v2.0.a1
pyrus_communis	pycom07g05010 pycom13g12220 pycom16g12050
rosa_chinensis	RchiOBHm_Chr4g0427441 RchiOBHm_Chr4g0427481
rosa_laevigata	RLG00000007244
rosa_multiflora	Rmu_sc0000603.1_g000009 Rmu_ssc0000351.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369100
rosa_rugosa	Rorug04G0208400 Rorug04G0218100
rosa_samantha	Rh4AG274300 Rh4BG280000 Rh4CG295100 Rh4DG277400
rosa_wichuraiana	Rw4G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	710
AccB7I	CCANNNNNTGG	1 cut(s)	298
AccBSI	CCGCTC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	559
AccII	CGCG	1 cut(s)	119
AciI	CCGC	4 cut(s)	56, 145, 164, 637
AclWI	GGATC	3 cut(s)	458, 471, 605
AcsI	RAATTY	2 cut(s)	211, 545
AcyI	GRCGYC	1 cut(s)	707
AfiI	CCNNNNNNNGG	2 cut(s)	239, 298
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	2 cut(s)	295, 601
AluI	AGCT	2 cut(s)	295, 601
Alw26I	GTCTC	2 cut(s)	191, 466
AlwI	GGATC	3 cut(s)	458, 471, 605
AoxI	GGCC	2 cut(s)	134, 304
ApeKI	GCWGC	2 cut(s)	124, 601
ApoI	RAATTY	2 cut(s)	211, 545
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	500
BamHI	GGATCC	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	710
BbvI	GCAGC	2 cut(s)	136, 588
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	515
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	2 cut(s)	191, 466
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	628
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	2 cut(s)	125, 602
BlsI	GCNGC	2 cut(s)	126, 603
Bme1390I	CCNGG	2 cut(s)	416, 515
BmiI	GGNNCC	2 cut(s)	198, 465
BmrFI	CCNGG	2 cut(s)	416, 515
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	710
BpuEI	CTTGAG	2 cut(s)	243, 428
BpuMI	CCSGG	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	707
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 298
Bse118I	RCCGGY	1 cut(s)	670
Bse1I	ACTGG	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	239, 298
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	2 cut(s)	52, 611
BseXI	GCAGC	2 cut(s)	136, 588
BseYI	CCCAGC	1 cut(s)	291
BsgI	GTGCAG	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	671
BshFI	GGCC	2 cut(s)	136, 306
BsiEI	CGRYCG	1 cut(s)	671
BsiSI	CCGG	2 cut(s)	416, 671
BslI	CCNNNNNNNGG	2 cut(s)	239, 298
BsmAI	GTCTC	2 cut(s)	191, 466
BsnI	GGCC	2 cut(s)	136, 306
Bso31I	GGTCTC	1 cut(s)	191
Bsp143I	GATC	4 cut(s)	430, 463, 610, 651
Bsp68I	TCGCGA	1 cut(s)	119
BspACI	CCGC	4 cut(s)	56, 145, 164, 637
BspANI	GGCC	2 cut(s)	136, 306
BspCNI	CTCAG	1 cut(s)	566
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	198, 465
BspPI	GGATC	3 cut(s)	458, 471, 605
BspTNI	GGTCTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	670
BsrI	ACTGG	1 cut(s)	379
BssAI	RCCGGY	1 cut(s)	670
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	4 cut(s)	430, 463, 610, 651
BssNI	GRCGYC	1 cut(s)	707
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	526, 589
Bst6I	CTCTTC	2 cut(s)	144, 651
BstACI	GRCGYC	1 cut(s)	707
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	399, 720
BstDEI	CTNAG	1 cut(s)	553
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	4 cut(s)	433, 466, 613, 654
BstMAI	GTCTC	2 cut(s)	191, 466
BstMBI	GATC	4 cut(s)	430, 463, 610, 651
BstMCI	CGRYCG	1 cut(s)	671
BstMWI	GCNNNNNNNGC	5 cut(s)	133, 355, 590, 724, 733
BstNI	CCWGG	1 cut(s)	515
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	2 cut(s)	414, 513
BstSFI	CTRYAG	1 cut(s)	628
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	136, 588
BstV2I	GAAGAC	1 cut(s)	710
BstX2I	RGATCY	2 cut(s)	430, 463
BstYI	RGATCY	2 cut(s)	430, 463
BsuRI	GGCC	2 cut(s)	136, 306
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	149
BtuMI	TCGCGA	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	399, 720
Cfr10I	RCCGGY	1 cut(s)	670
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	4 cut(s)	192, 394, 409, 460
CviJI	RGCY	7 cut(s)	136, 199, 295, 306, 378, 601, 674
CviKI_1	RGCY	7 cut(s)	136, 199, 295, 306, 378, 601, 674
DdeI	CTNAG	1 cut(s)	553
DpnI	GATC	4 cut(s)	432, 465, 612, 653
DpnII	GATC	4 cut(s)	430, 463, 610, 651
Eam1104I	CTCTTC	2 cut(s)	144, 651
EarI	CTCTTC	2 cut(s)	144, 651
EciI	GGCGGA	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	169
EcoRI	GAATTC	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	513
EcoRV	GATATC	1 cut(s)	169
FaeI	CATG	4 cut(s)	195, 397, 412, 463
FaiI	YATR	7 cut(s)	8, 73, 193, 395, 410, 461, 714
FatI	CATG	4 cut(s)	191, 393, 408, 459
FblI	GTMKAC	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	125, 602
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	125, 602
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	2 cut(s)	125, 602
GsaI	CCCAGC	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	136, 306
HapII	CCGG	2 cut(s)	416, 671
Hin1I	GRCGYC	1 cut(s)	707
Hin1II	CATG	4 cut(s)	195, 397, 412, 463
HinfI	GANTC	5 cut(s)	154, 205, 491, 533, 664
HpaII	CCGG	2 cut(s)	416, 671
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	3 cut(s)	210, 544, 610
Hpy188III	TCNNGA	3 cut(s)	118, 260, 647
Hpy8I	GTNNAC	1 cut(s)	560
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	5 cut(s)	478, 565, 574, 634, 726
HpyCH4III	ACNGT	2 cut(s)	526, 589
HpyCH4IV	ACGT	2 cut(s)	130, 707
HpyCH4V	TGCA	7 cut(s)	99, 251, 349, 401, 424, 593, 722
HpyF10VI	GCNNNNNNNGC	5 cut(s)	133, 355, 590, 724, 733
HpyF3I	CTNAG	1 cut(s)	553
HpySE526I	ACGT	2 cut(s)	130, 707
Hsp92I	GRCGYC	1 cut(s)	707
Hsp92II	CATG	4 cut(s)	195, 397, 412, 463
Kzo9I	GATC	4 cut(s)	430, 463, 610, 651
LmnI	GCTCC	2 cut(s)	196, 598
Lsp1109I	GCAGC	2 cut(s)	136, 588
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	2 cut(s)	130, 707
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	4 cut(s)	432, 465, 612, 653
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	4 cut(s)	430, 463, 610, 651
MboII	GAAGA	6 cut(s)	131, 541, 668, 673, 703, 715
MflI	RGATCY	2 cut(s)	430, 463
MluCI	AATT	5 cut(s)	94, 211, 382, 437, 545
MlyI	GAGTC	1 cut(s)	542
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	9 cut(s)	24, 30, 33, 147, 267, 317, 345, 547, 589
MseI	TTAA	1 cut(s)	449
MspI	CCGG	2 cut(s)	416, 671
MspR9I	CCNGG	2 cut(s)	416, 515
MvaI	CCWGG	1 cut(s)	515
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	5 cut(s)	133, 355, 590, 724, 733
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	4 cut(s)	430, 463, 610, 651
NlaIII	CATG	4 cut(s)	195, 397, 412, 463
NlaIV	GGNNCC	2 cut(s)	198, 465
NruI	TCGCGA	1 cut(s)	119
NspI	RCATGY	1 cut(s)	397
PfeI	GAWTC	4 cut(s)	154, 205, 491, 664
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	126, 603
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	513
PspFI	CCCAGC	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	2 cut(s)	198, 465
PsuI	RGATCY	2 cut(s)	430, 463
RruI	TCGCGA	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	2 cut(s)	125, 602
Sau3AI	GATC	4 cut(s)	430, 463, 610, 651
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	2 cut(s)	416, 515
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	628
SmlI	CTYRAG	2 cut(s)	258, 443
SmoI	CTYRAG	2 cut(s)	258, 443
Sse9I	AATT	5 cut(s)	94, 211, 382, 437, 545
SsiI	CCGC	4 cut(s)	56, 145, 164, 637
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	414, 513
TaaI	ACNGT	2 cut(s)	526, 589
TaiI	ACGT	2 cut(s)	133, 710
TaqI	TCGA	4 cut(s)	35, 380, 654, 667
TasI	AATT	5 cut(s)	94, 211, 382, 437, 545
TfiI	GAWTC	4 cut(s)	154, 205, 491, 664
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	2 cut(s)	124, 601
TspDTI	ATGAA	2 cut(s)	207, 696
TspRI	CASTG	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	298
XapI	RAATTY	2 cut(s)	211, 545
XceI	RCATGY	1 cut(s)	397
XcmI	CCANNNNNNNNNTGG	2 cut(s)	295, 299
XmiI	GTMKAC	1 cut(s)	559
XspI	CTAG	1 cut(s)	234
ZraI	GACGTC	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.