Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006753

Physical Location & Seq

Genomic Coordinates Forward (+)

4307619 .. 4309896

Gene Structure 2278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05010.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTCGCGTCTGATTTAATCTCAACCGTCCATCGTAAATTAGCTCTATCCCAGACTCTCCTCATCTCATTAACTCTCGATCTCTCCAACACTCCAACCCTCTTATCTCTCTCGAATCCGCGGCGGCGCTGCTCCGTCCACCTTCTCCGACGGATTCCGGCCAGCCACAAGCAAGCCACAGAGACAAGCACACGCACCCTGCTAGGCCTCTTCTTCGTCTTTCGAGTCCCAAAATCCAGGTGCTCTTTCGAGTTTCGGTTCCATAAATTGCGTTCTAGAATGGCTAAAAGCAAGGCGGCGATTGGGCTCTCGTGGGAGCCAAAGTTGCCGGCTTTTTCATCGGCCTCCAAAAATCGAGGTGGGTCTGGCTCCAAACCTCGCCCCGAAGCTAATCCGCTTTGGAAACCCAGCACGCAGCTTGTCGATGGCCTCTTCGTTCCGCCGAATGACCCGGTAAAGCGGAACAAATTGGCCAAGAAGCAGATCAAAGACACTGCTGGAACAAGCTGGTTTGACATGCCTGCACCAACCATGACCCCGGAATTGCAGAAAGATCTCCAATTACTCAAGTTAAGGAATGTTGTGGATCCAAAGAGACATTACAAAAAGGGGGATGCACAACCGAACAAGTATTTCCAGGTAGGGACAGTGATAGAGTTCCCATTAGATTTCTTCTCGAGCAGACTTACAAAGAAGGAAAGGAAGGTGTCCCTTGCAGAGGAAGTGCTTTCTGATCGTAACCTTGGCAACTACAGAAAGCGGAAGGTTCACGAGATAGAAGAGAAAAACCGGCCGGGTGGAAATGAAAAATGGAAGATAAAGGGAAAAGGGTCGTACCAGCGTGCAAAGCAACGAAGGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fcf2

Protein Analysis

288

Amino Acids

32.75

Weight (kDa)

10.69

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54770 AT1G54770 AT5G30495 AT5G30495
fragaria_vesca	FvH4_4g21490
malus_domestica	MD07G1065600.v1.1 MD13G1140700.v1.1 MD16G1136700.v1.1
prunus_persica	Prupe.1G105700_v2.0.a1 Prupe.1G105700_v2.0.a1
pyrus_communis	pycom07g05010 pycom13g12220 pycom16g12050
rosa_chinensis	RchiOBHm_Chr4g0427441 RchiOBHm_Chr4g0427481
rosa_laevigata	RLG00000007244
rosa_multiflora	Rmu_sc0000603.1_g000009 Rmu_ssc0000351.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369100
rosa_rugosa	Rorug04G0208400 Rorug04G0218100
rosa_samantha	Rh4AG274300 Rh4BG280000 Rh4CG295100 Rh4DG277400
rosa_wichuraiana	Rw4G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	8, 121
AciI	CCGC	8 cut(s)	119, 121, 124, 296, 395, 440, 460, 760
AclWI	GGATC	2 cut(s)	581, 594
AcoI	YGGCCR	3 cut(s)	159, 471, 791
AfaI	GTAC	1 cut(s)	836
AfiI	CCNNNNNNNGG	1 cut(s)	718
AjnI	CCWGG	2 cut(s)	236, 636
AluBI	AGCT	4 cut(s)	44, 389, 418, 507
AluI	AGCT	4 cut(s)	44, 389, 418, 507
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	2 cut(s)	176, 589
AlwI	GGATC	2 cut(s)	581, 594
Ama87I	CYCGRG	1 cut(s)	676
AoxI	GGCC	6 cut(s)	159, 205, 342, 427, 471, 791
ApeKI	GCWGC	2 cut(s)	129, 415
AspLEI	GCGC	1 cut(s)	129
AsuC2I	CCSGG	3 cut(s)	452, 539, 795
AvaI	CYCGRG	1 cut(s)	676
BalI	TGGCCA	1 cut(s)	473
BamHI	GGATCC	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	309
BauI	CACGAG	2 cut(s)	310, 770
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	116, 427
BccI	CCATC	2 cut(s)	39, 419
BciT130I	CCWGG	2 cut(s)	238, 638
BcnI	CCSGG	3 cut(s)	452, 539, 795
BcoDI	GTCTC	2 cut(s)	176, 589
BfaI	CTAG	2 cut(s)	203, 276
BfmI	CTRYAG	1 cut(s)	751
BfoI	RGCGCY	1 cut(s)	130
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	5 cut(s)	122, 125, 130, 297, 416
BlsI	GCNGC	5 cut(s)	123, 126, 131, 298, 417
Bme1390I	CCNGG	5 cut(s)	238, 452, 539, 638, 795
BmeT110I	CYCGRG	1 cut(s)	676
BmiI	GGNNCC	4 cut(s)	260, 318, 370, 588
BmrFI	CCNGG	5 cut(s)	238, 452, 539, 638, 795
BmsI	GCATC	1 cut(s)	604
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	3 cut(s)	452, 539, 795
BsaJI	CCNNGG	3 cut(s)	119, 537, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	1 cut(s)	718
Bse118I	RCCGGY	2 cut(s)	328, 789
BseBI	CCWGG	2 cut(s)	238, 638
BseDI	CCNNGG	3 cut(s)	119, 537, 742
BseGI	GGATG	1 cut(s)	619
BseLI	CCNNNNNNNGG	1 cut(s)	718
BseRI	GAGGAG	1 cut(s)	50
BseX3I	CGGCCG	1 cut(s)	791
BseXI	GCAGC	2 cut(s)	116, 427
BseYI	CCCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	2 cut(s)	8, 121
Bsh1285I	CGRYCG	1 cut(s)	794
BshFI	GGCC	6 cut(s)	161, 207, 344, 429, 473, 793
BsiEI	CGRYCG	1 cut(s)	794
BsiHKAI	GWGCWC	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	676
BsiSI	CCGG	6 cut(s)	158, 329, 452, 539, 790, 794
BslFI	GGGAC	3 cut(s)	212, 658, 694
BslI	CCNNNNNNNGG	1 cut(s)	718
BsmAI	GTCTC	2 cut(s)	176, 589
BsmFI	GGGAC	3 cut(s)	212, 658, 694
BsnI	GGCC	6 cut(s)	161, 207, 344, 429, 473, 793
BsoBI	CYCGRG	1 cut(s)	676
Bsp1286I	GDGCHC	2 cut(s)	245, 309
Bsp143I	GATC	5 cut(s)	79, 483, 553, 586, 733
BspACI	CCGC	8 cut(s)	119, 121, 124, 296, 395, 440, 460, 760
BspANI	GGCC	6 cut(s)	161, 207, 344, 429, 473, 793
BspFNI	CGCG	2 cut(s)	8, 121
BspLI	GGNNCC	4 cut(s)	260, 318, 370, 588
BspPI	GGATC	2 cut(s)	581, 594
BsrFI	RCCGGY	2 cut(s)	328, 789
BssAI	RCCGGY	2 cut(s)	328, 789
BssECI	CCNNGG	3 cut(s)	119, 537, 742
BssMI	GATC	5 cut(s)	79, 483, 553, 586, 733
BssSI	CACGAG	2 cut(s)	310, 770
BssT1I	CCWWGG	1 cut(s)	742
Bst2BI	CACGAG	2 cut(s)	310, 770
Bst2UI	CCWGG	2 cut(s)	238, 638
Bst4CI	ACNGT	2 cut(s)	28, 649
Bst6I	CTCTTC	3 cut(s)	215, 437, 774
BstC8I	GCNNGC	6 cut(s)	163, 174, 330, 413, 522, 843
BstDSI	CCRYGG	1 cut(s)	119
BstENI	CCTNNNNNAGG	1 cut(s)	716
BstF5I	GGATG	1 cut(s)	619
BstFNI	CGCG	2 cut(s)	8, 121
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	5 cut(s)	82, 486, 556, 589, 736
BstMAI	GTCTC	2 cut(s)	176, 589
BstMBI	GATC	5 cut(s)	79, 483, 553, 586, 733
BstMCI	CGRYCG	1 cut(s)	794
BstMWI	GCNNNNNNNGC	3 cut(s)	325, 847, 856
BstNI	CCWGG	2 cut(s)	238, 638
BstNSI	RCATGY	1 cut(s)	520
BstSCI	CCNGG	5 cut(s)	236, 450, 537, 636, 793
BstSFI	CTRYAG	1 cut(s)	751
BstUI	CGCG	2 cut(s)	8, 121
BstV1I	GCAGC	2 cut(s)	116, 427
BstX2I	RGATCY	2 cut(s)	553, 586
BstYI	RGATCY	2 cut(s)	553, 586
BstZI	CGGCCG	1 cut(s)	791
BsuRI	GGCC	6 cut(s)	161, 207, 344, 429, 473, 793
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	619
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	3 cut(s)	492, 654, 859
Cac8I	GCNNGC	6 cut(s)	163, 174, 330, 413, 522, 843
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	2 cut(s)	328, 789
Cfr42I	CCGCGG	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	835
CviAII	CATG	2 cut(s)	517, 532
CviQI	GTAC	1 cut(s)	835
DpnI	GATC	5 cut(s)	81, 485, 555, 588, 735
DpnII	GATC	5 cut(s)	79, 483, 553, 586, 733
EaeI	YGGCCR	3 cut(s)	159, 471, 791
EagI	CGGCCG	1 cut(s)	791
Eam1104I	CTCTTC	3 cut(s)	215, 437, 774
EarI	CTCTTC	3 cut(s)	215, 437, 774
EciI	GGCGGA	1 cut(s)	429
EclXI	CGGCCG	1 cut(s)	791
Eco130I	CCWWGG	1 cut(s)	742
Eco147I	AGGCCT	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	309
Eco52I	CGGCCG	1 cut(s)	791
Eco88I	CYCGRG	1 cut(s)	676
EcoNI	CCTNNNNNAGG	1 cut(s)	716
EcoRII	CCWGG	2 cut(s)	236, 636
EcoT14I	CCWWGG	1 cut(s)	742
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	742
FaeI	CATG	2 cut(s)	520, 535
FaiI	YATR	3 cut(s)	264, 518, 533
FaqI	GGGAC	3 cut(s)	212, 658, 694
FatI	CATG	2 cut(s)	516, 531
Fnu4HI	GCNGC	5 cut(s)	122, 125, 130, 297, 416
FokI	GGATG	1 cut(s)	626
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	5 cut(s)	122, 125, 130, 297, 416
FspBI	CTAG	2 cut(s)	203, 276
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	5 cut(s)	122, 125, 130, 297, 416
GsaI	CCCAGC	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	6 cut(s)	161, 207, 344, 429, 473, 793
HapII	CCGG	6 cut(s)	158, 329, 452, 539, 790, 794
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	520, 535
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	4 cut(s)	55, 115, 154, 225
HpaII	CCGG	6 cut(s)	158, 329, 452, 539, 790, 794
Hpy166II	GTNNAC	2 cut(s)	139, 769
Hpy188I	TCNGA	3 cut(s)	13, 149, 733
Hpy188III	TCNNGA	5 cut(s)	77, 112, 276, 676, 770
Hpy8I	GTNNAC	2 cut(s)	139, 769
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	5 cut(s)	152, 688, 697, 757, 849
HpyCH4III	ACNGT	2 cut(s)	28, 649
HpyCH4V	TGCA	5 cut(s)	524, 547, 617, 716, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	325, 847, 856
Hsp92II	CATG	2 cut(s)	520, 535
HspAI	GCGC	1 cut(s)	127
KroI	GCCGGC	1 cut(s)	328
KroNI	GCCGGC	1 cut(s)	330
KspI	CCGCGG	1 cut(s)	122
Kzo9I	GATC	5 cut(s)	79, 483, 553, 586, 733
LmnI	GCTCC	3 cut(s)	137, 316, 374
Lsp1109I	GCAGC	2 cut(s)	116, 427
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	2 cut(s)	203, 276
MaeIII	GTNAC	1 cut(s)	737
MalI	GATC	5 cut(s)	81, 485, 555, 588, 735
MboI	GATC	5 cut(s)	79, 483, 553, 586, 733
MboII	GAAGA	6 cut(s)	202, 205, 424, 664, 791, 826
MflI	RGATCY	2 cut(s)	553, 586
MhlI	GDGCHC	2 cut(s)	245, 309
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	5 cut(s)	38, 266, 467, 542, 560
MluNI	TGGCCA	1 cut(s)	473
MlyI	GAGTC	2 cut(s)	49, 234
MmeI	TCCRAC	3 cut(s)	111, 119, 172
MnlI	CCTC	8 cut(s)	71, 110, 218, 350, 355, 387, 440, 712
Mox20I	TGGCCA	1 cut(s)	473
MroNI	GCCGGC	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	3 cut(s)	17, 71, 572
Msp20I	TGGCCA	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	6 cut(s)	158, 329, 452, 539, 790, 794
MspR9I	CCNGG	5 cut(s)	238, 452, 539, 638, 795
MvaI	CCWGG	2 cut(s)	238, 638
MvnI	CGCG	2 cut(s)	8, 121
MwoI	GCNNNNNNNGC	3 cut(s)	325, 847, 856
NaeI	GCCGGC	1 cut(s)	330
NciI	CCSGG	3 cut(s)	452, 539, 795
NdeII	GATC	5 cut(s)	79, 483, 553, 586, 733
NgoMIV	GCCGGC	1 cut(s)	328
NlaIII	CATG	2 cut(s)	520, 535
NlaIV	GGNNCC	4 cut(s)	260, 318, 370, 588
NspI	RCATGY	1 cut(s)	520
PaeR7I	CTCGAG	1 cut(s)	676
PceI	AGGCCT	1 cut(s)	207
PdiI	GCCGGC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	115, 154
PkrI	GCNGC	5 cut(s)	123, 126, 131, 298, 417
PleI	GAGTC	2 cut(s)	49, 233
PpsI	GAGTC	2 cut(s)	49, 233
Psp6I	CCWGG	2 cut(s)	236, 636
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	236, 636
PspN4I	GGNNCC	4 cut(s)	260, 318, 370, 588
PsuI	RGATCY	2 cut(s)	553, 586
RsaI	GTAC	1 cut(s)	836
RsaNI	GTAC	1 cut(s)	835
SacII	CCGCGG	1 cut(s)	122
SaqAI	TTAA	3 cut(s)	17, 71, 572
SatI	GCNGC	5 cut(s)	122, 125, 130, 297, 416
Sau3AI	GATC	5 cut(s)	79, 483, 553, 586, 733
SchI	GAGTC	2 cut(s)	49, 234
ScrFI	CCNGG	5 cut(s)	238, 452, 539, 638, 795
SduI	GDGCHC	2 cut(s)	245, 309
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	1 cut(s)	751
Sfr274I	CTCGAG	1 cut(s)	676
Sfr303I	CCGCGG	1 cut(s)	122
SgrBI	CCGCGG	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	676
SmlI	CTYRAG	2 cut(s)	566, 676
SmoI	CTYRAG	2 cut(s)	566, 676
Sse9I	AATT	5 cut(s)	38, 266, 467, 542, 560
SseBI	AGGCCT	1 cut(s)	207
SsiI	CCGC	8 cut(s)	119, 121, 124, 296, 395, 440, 460, 760
SspMI	CTAG	2 cut(s)	203, 276
StuI	AGGCCT	1 cut(s)	207
StyD4I	CCNGG	5 cut(s)	236, 450, 537, 636, 793
StyI	CCWWGG	1 cut(s)	742
TaaI	ACNGT	2 cut(s)	28, 649
TaqI	TCGA	7 cut(s)	78, 113, 223, 249, 355, 423, 677
TasI	AATT	5 cut(s)	38, 266, 467, 542, 560
TauI	GCSGC	3 cut(s)	124, 127, 299
TfiI	GAWTC	2 cut(s)	115, 154
Tru1I	TTAA	3 cut(s)	17, 71, 572
Tru9I	TTAA	3 cut(s)	17, 71, 572
TscAI	CASTG	2 cut(s)	499, 654
TseI	GCWGC	2 cut(s)	129, 415
TspDTI	ATGAA	2 cut(s)	327, 819
TspGWI	ACGGA	2 cut(s)	124, 166
TspRI	CASTG	2 cut(s)	499, 654
XagI	CCTNNNNNAGG	1 cut(s)	716
XbaI	TCTAGA	1 cut(s)	275
XceI	RCATGY	1 cut(s)	520
XhoI	CTCGAG	1 cut(s)	676
XspI	CTAG	2 cut(s)	203, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.