Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006753

Physical Location & Seq

Genomic Coordinates Forward (+)

37696401 .. 37697911

Gene Structure 1511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0218100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGAGATTGATTCCCAATCTTCTGAGATAGAAAGGCTTTTTGAGGAAAACTCTAATTTATCTAGTTCTCATCAGGAGGCTATGAGCATAGCTTTGCACCGGGAGACTCAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGAGGTATTACAGCTCAGAGCAAGACTCCAACAAACCACTCAAGCATACAATGGTCTTGCACGCCTCTATAAACCGGTGTTGCGAAACATAGAAAGCAGTCTCATTAAGATGAAACAAGATGGCCCTGTGACAGTGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fcf2

Protein Analysis

98

Amino Acids

11.11

Weight (kDa)

5.67

Isoelectric Point (pI)

85.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54770 AT1G54770 AT5G30495 AT5G30495
fragaria_vesca	FvH4_4g21490
malus_domestica	MD07G1065600.v1.1 MD13G1140700.v1.1 MD16G1136700.v1.1
prunus_persica	Prupe.1G105700_v2.0.a1 Prupe.1G105700_v2.0.a1
pyrus_communis	pycom07g05010 pycom13g12220 pycom16g12050
rosa_chinensis	RchiOBHm_Chr4g0427441 RchiOBHm_Chr4g0427481
rosa_laevigata	RLG00000007244
rosa_multiflora	Rmu_sc0000603.1_g000009 Rmu_ssc0000351.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369100
rosa_rugosa	Rorug04G0208400 Rorug04G0218100
rosa_samantha	Rh4AG274300 Rh4BG280000 Rh4CG295100 Rh4DG277400
rosa_wichuraiana	Rw4G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	1 cut(s)	120
AgeI	ACCGGT	1 cut(s)	229
AluBI	AGCT	3 cut(s)	92, 155, 169
AluI	AGCT	3 cut(s)	92, 155, 169
Alw26I	GTCTC	2 cut(s)	98, 260
AlwI	GGATC	1 cut(s)	120
AoxI	GGCC	1 cut(s)	277
AsiGI	ACCGGT	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	101
BbvCI	CCTCAGC	1 cut(s)	156
BccI	CCATC	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	98, 260
BfaI	CTAG	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	101
BplI	GAGNNNNNCTC	4 cut(s)	35, 67, 165, 197
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	101
BsaWI	WCCGGW	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	229
BseMII	CTCAG	4 cut(s)	15, 122, 147, 184
BshFI	GGCC	1 cut(s)	279
BshTI	ACCGGT	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	100, 230
BsmAI	GTCTC	2 cut(s)	98, 260
BsnI	GGCC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	4 cut(s)	16, 121, 148, 183
BspPI	GGATC	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	229
BssMI	GATC	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	4 cut(s)	24, 108, 156, 170
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	2 cut(s)	98, 260
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	278
CspAI	ACCGGT	1 cut(s)	229
CviJI	RGCY	6 cut(s)	37, 80, 92, 155, 169, 279
CviKI_1	RGCY	6 cut(s)	37, 80, 92, 155, 169, 279
DdeI	CTNAG	4 cut(s)	24, 108, 156, 170
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
FaiI	YATR	5 cut(s)	83, 89, 202, 225, 245
FspBI	CTAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	2 cut(s)	100, 230
HinfI	GANTC	3 cut(s)	11, 106, 180
HpaII	CCGG	2 cut(s)	100, 230
Hpy188I	TCNGA	2 cut(s)	25, 173
Hpy188III	TCNNGA	2 cut(s)	74, 110
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	3 cut(s)	97, 122, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	4 cut(s)	24, 108, 156, 170
Kzo9I	GATC	1 cut(s)	112
LpnPI	CCDG	4 cut(s)	59, 95, 113, 243
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	12
MluCI	AATT	1 cut(s)	55
MlyI	GAGTC	2 cut(s)	100, 174
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	5 cut(s)	37, 70, 136, 151, 230
MseI	TTAA	1 cut(s)	261
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	100, 230
MspR9I	CCNGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	11
PinAI	ACCGGT	1 cut(s)	229
PleI	GAGTC	2 cut(s)	100, 174
PpsI	GAGTC	2 cut(s)	100, 174
PspPI	GGNCC	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	2 cut(s)	100, 174
ScrFI	CCNGG	1 cut(s)	101
SetI	ASST	4 cut(s)	94, 157, 162, 171
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	289
TasI	AATT	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	294
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.