Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000351.1

Orthogroup ID

OG0006753

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4297

Gene Structure 4297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000351.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 976 bp

gacctcggcacttcctcctactactccatcgcctttgcgtctcctcctcactgccaacaccaaaactcacggacttattgcttgcagcaccgacgtcagcgtcgcgaccttagccaacaagttccccgaagtcttcatggccacgtgtctctcccggtctgtcgccctcaacgcccagctccaatgtcctcctgtctccggcatgtccacggcgccggagtccgccatagagatcgtcgacacgtggctcaacactcccttcaaagtgccctatcctgcgtcaaagtcgaaaccttggtcggaaattagagctgattctgatttgaatgagagctcttgttccatctgctgtttggtgaagaatcagaatttgaatccgattgatataatgggaatggcggatatcaaagcagtagttggtctctcatgggagccaaagattccgaatttttcatcggcaaccaaacctagacttggagttgatgcaaaacctcaagaaaccaatcatctttggaaaccccccacccagcttgtggatggcctctttgtgccacccaataaccccaaaacgctgaataagttgcagaggaagcaactcaaagacacaactggctcgaattggtttgacatgcctgcaccaaccatgaccccagagttgcagaaagatctccaattactcaagttaaggagtgtcatggatccaaagagacactacaagaagggtgattcgcaaacttccaagtatttccaggtgggaacggtggtagagtcctcatcagaattcttctcaggtagactaacaaagaaggaaaggaaggcaaccgttgcagaggagctgctttctgatcctgcccttgcgacctacaggaagcggaaggttcgtgagatcgaagagaagaatcgaccggctgataatgaaaaatggaagaataaagggaagacgtcctataagcgtgcaaagcaaagaaggcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fcf2

Protein Analysis

324

Amino Acids

36.15

Weight (kDa)

9.62

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54770 AT1G54770 AT5G30495 AT5G30495
fragaria_vesca	FvH4_4g21490
malus_domestica	MD07G1065600.v1.1 MD13G1140700.v1.1 MD16G1136700.v1.1
prunus_persica	Prupe.1G105700_v2.0.a1 Prupe.1G105700_v2.0.a1
pyrus_communis	pycom07g05010 pycom13g12220 pycom16g12050
rosa_chinensis	RchiOBHm_Chr4g0427441 RchiOBHm_Chr4g0427481
rosa_laevigata	RLG00000007244
rosa_multiflora	Rmu_sc0000603.1_g000009 Rmu_ssc0000351.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369100
rosa_rugosa	Rorug04G0208400 Rorug04G0218100
rosa_samantha	Rh4AG274300 Rh4BG280000 Rh4CG295100 Rh4DG277400
rosa_wichuraiana	Rw4G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	99
AatII	GACGTC	2 cut(s)	97, 945
AccB1I	GGYRCC	1 cut(s)	212
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccI	GTMKAC	2 cut(s)	238, 794
AccII	CGCG	1 cut(s)	105
AciI	CCGC	3 cut(s)	223, 399, 872
AclWI	GGATC	3 cut(s)	693, 706, 840
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	3 cut(s)	368, 446, 780
AcvI	CACGTG	2 cut(s)	145, 244
AcyI	GRCGYC	3 cut(s)	94, 213, 942
AfiI	CCNNNNNNNGG	3 cut(s)	198, 474, 533
AflIII	ACRYGT	2 cut(s)	144, 241
AgsI	TTSAA	3 cut(s)	263, 326, 374
AjnI	CCWGG	1 cut(s)	748
AluBI	AGCT	5 cut(s)	179, 312, 334, 530, 836
AluI	AGCT	5 cut(s)	179, 312, 334, 530, 836
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	5 cut(s)	45, 153, 200, 426, 701
AlwI	GGATC	3 cut(s)	693, 706, 840
AoxI	GGCC	2 cut(s)	139, 539
ApeKI	GCWGC	2 cut(s)	85, 836
ApoI	RAATTY	3 cut(s)	368, 446, 780
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
AspLEI	GCGC	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	368, 735
BaeGI	GKGCMC	1 cut(s)	271
BalI	TGGCCA	1 cut(s)	141
BamHI	GGATCC	1 cut(s)	698
BanI	GGYRCC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	336
BbrPI	CACGTG	2 cut(s)	145, 244
BbsI	GAAGAC	2 cut(s)	125, 945
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	97, 823
BccI	CCATC	3 cut(s)	35, 351, 531
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	750
BcnI	CCSGG	1 cut(s)	155
BcoDI	GTCTC	5 cut(s)	45, 153, 200, 426, 701
BfaI	CTAG	1 cut(s)	469
BfmI	CTRYAG	1 cut(s)	863
BfoI	RGCGCY	1 cut(s)	216
BglII	AGATCT	1 cut(s)	665
BisI	GCNGC	2 cut(s)	86, 837
BlsI	GCNGC	2 cut(s)	87, 838
Bme1390I	CCNGG	2 cut(s)	155, 750
BmiI	GGNNCC	3 cut(s)	214, 433, 700
BmrFI	CCNGG	2 cut(s)	155, 750
BmsI	GCATC	1 cut(s)	473
BpiI	GAAGAC	2 cut(s)	125, 945
Bpu10I	CCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	2 cut(s)	478, 663
BpuMI	CCSGG	1 cut(s)	155
BsaAI	YACGTR	2 cut(s)	145, 244
BsaHI	GRCGYC	3 cut(s)	94, 213, 942
BsaI	GGTCTC	1 cut(s)	426
BsaJI	CCNNGG	3 cut(s)	4, 208, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 474, 533
Bse118I	RCCGGY	1 cut(s)	905
Bse1I	ACTGG	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	3 cut(s)	4, 208, 294
BseGI	GGATG	1 cut(s)	542
BseLI	CCNNNNNNNGG	3 cut(s)	198, 474, 533
BseMII	CTCAG	1 cut(s)	802
BseNI	ACTGG	1 cut(s)	614
BseRI	GAGGAG	3 cut(s)	33, 36, 846
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	97, 823
BseYI	CCCAGC	2 cut(s)	175, 526
BsgI	GTGCAG	1 cut(s)	619
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	906
BshFI	GGCC	2 cut(s)	141, 541
BshNI	GGYRCC	1 cut(s)	212
BsiEI	CGRYCG	1 cut(s)	906
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	4 cut(s)	155, 199, 216, 906
BslI	CCNNNNNNNGG	3 cut(s)	198, 474, 533
BsmAI	GTCTC	5 cut(s)	45, 153, 200, 426, 701
BsmBI	CGTCTC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	141, 541
Bso31I	GGTCTC	1 cut(s)	426
Bsp1286I	GDGCHC	2 cut(s)	271, 336
Bsp143I	GATC	5 cut(s)	232, 665, 698, 845, 886
Bsp68I	TCGCGA	1 cut(s)	105
BspACI	CCGC	3 cut(s)	223, 399, 872
BspANI	GGCC	2 cut(s)	141, 541
BspCNI	CTCAG	1 cut(s)	801
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	214, 433, 700
BspPI	GGATC	3 cut(s)	693, 706, 840
BspT107I	GGYRCC	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	426
BsrFI	RCCGGY	1 cut(s)	905
BsrI	ACTGG	1 cut(s)	614
BssAI	RCCGGY	1 cut(s)	905
BssECI	CCNNGG	3 cut(s)	4, 208, 294
BssMI	GATC	5 cut(s)	232, 665, 698, 845, 886
BssNI	GRCGYC	3 cut(s)	94, 213, 942
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	2 cut(s)	761, 824
Bst6I	CTCTTC	1 cut(s)	886
BstACI	GRCGYC	3 cut(s)	94, 213, 942
BstAPI	GCANNNNNTGC	1 cut(s)	825
BstBAI	YACGTR	2 cut(s)	145, 244
BstC8I	GCNNGC	3 cut(s)	83, 634, 955
BstDEI	CTNAG	2 cut(s)	110, 788
BstDSI	CCRYGG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	542
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	5 cut(s)	235, 668, 701, 848, 889
BstMAI	GTCTC	5 cut(s)	45, 153, 200, 426, 701
BstMBI	GATC	5 cut(s)	232, 665, 698, 845, 886
BstMCI	CGRYCG	1 cut(s)	906
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 171, 590, 825, 959, 968
BstNI	CCWGG	1 cut(s)	750
BstNSI	RCATGY	2 cut(s)	206, 632
BstSCI	CCNGG	2 cut(s)	153, 748
BstSFI	CTRYAG	1 cut(s)	863
BstSLI	GKGCMC	1 cut(s)	271
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	97, 823
BstV2I	GAAGAC	2 cut(s)	125, 945
BstX2I	RGATCY	2 cut(s)	665, 698
BstYI	RGATCY	2 cut(s)	665, 698
BsuRI	GGCC	2 cut(s)	141, 541
BtgI	CCRYGG	1 cut(s)	208
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	542
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
BtuMI	TCGCGA	1 cut(s)	105
Cac8I	GCNNGC	3 cut(s)	83, 634, 955
CfoI	GCGC	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	905
CseI	GACGC	3 cut(s)	27, 89, 268
CspCI	CAANNNNNGTGG	2 cut(s)	512, 547
CviAII	CATG	6 cut(s)	137, 203, 427, 629, 644, 695
DdeI	CTNAG	2 cut(s)	110, 788
DinI	GGCGCC	1 cut(s)	214
DpnI	GATC	5 cut(s)	234, 667, 700, 847, 888
DpnII	GATC	5 cut(s)	232, 665, 698, 845, 886
DrdI	GACNNNNNNGTC	1 cut(s)	99
DseDI	GACNNNNNNGTC	1 cut(s)	99
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	886
EarI	CTCTTC	1 cut(s)	886
EciI	GGCGGA	2 cut(s)	212, 414
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	426
Eco32I	GATATC	1 cut(s)	404
Eco53kI	GAGCTC	1 cut(s)	334
Eco72I	CACGTG	2 cut(s)	145, 244
EcoICRI	GAGCTC	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	780
EcoRII	CCWGG	1 cut(s)	748
EcoRV	GATATC	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	336
EgeI	GGCGCC	1 cut(s)	214
EheI	GGCGCC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	294
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	6 cut(s)	140, 206, 430, 632, 647, 698
FaiI	YATR	9 cut(s)	138, 204, 228, 387, 428, 630, 645, 696, 949
FatI	CATG	6 cut(s)	136, 202, 426, 628, 643, 694
FblI	GTMKAC	2 cut(s)	238, 794
Fnu4HI	GCNGC	2 cut(s)	86, 837
FokI	GGATG	1 cut(s)	549
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	2 cut(s)	86, 837
FspBI	CTAG	1 cut(s)	469
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	2 cut(s)	86, 837
GsaI	CCCAGC	2 cut(s)	179, 530
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	141, 541
HapII	CCGG	4 cut(s)	155, 199, 216, 906
HgaI	GACGC	3 cut(s)	27, 89, 268
HhaI	GCGC	1 cut(s)	215
Hin1I	GRCGYC	3 cut(s)	94, 213, 942
Hin1II	CATG	6 cut(s)	140, 206, 430, 632, 647, 698
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HinfI	GANTC	8 cut(s)	219, 315, 362, 374, 440, 726, 768, 899
HpaII	CCGG	4 cut(s)	155, 199, 216, 906
HphI	GGTGA	2 cut(s)	368, 735
Hpy166II	GTNNAC	3 cut(s)	208, 239, 795
Hpy188I	TCNGA	7 cut(s)	302, 320, 367, 379, 445, 779, 845
Hpy188III	TCNNGA	3 cut(s)	104, 495, 882
Hpy8I	GTNNAC	3 cut(s)	208, 239, 795
Hpy99I	CGWCG	3 cut(s)	96, 105, 240
HpyAV	CCTTC	6 cut(s)	269, 713, 800, 809, 869, 961
HpyCH4III	ACNGT	2 cut(s)	761, 824
HpyCH4IV	ACGT	4 cut(s)	94, 144, 243, 942
HpyCH4V	TGCA	7 cut(s)	85, 486, 584, 636, 659, 828, 957
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 171, 590, 825, 959, 968
HpyF3I	CTNAG	2 cut(s)	110, 788
HpySE526I	ACGT	4 cut(s)	94, 144, 243, 942
Hsp92I	GRCGYC	3 cut(s)	94, 213, 942
Hsp92II	CATG	6 cut(s)	140, 206, 430, 632, 647, 698
HspAI	GCGC	1 cut(s)	213
KasI	GGCGCC	1 cut(s)	212
Kzo9I	GATC	5 cut(s)	232, 665, 698, 845, 886
LmnI	GCTCC	3 cut(s)	184, 431, 833
Lsp1109I	GCAGC	2 cut(s)	97, 823
LweI	GCATC	1 cut(s)	473
MaeI	CTAG	1 cut(s)	469
MaeII	ACGT	4 cut(s)	94, 144, 243, 942
MalI	GATC	5 cut(s)	234, 667, 700, 847, 888
MboI	GATC	5 cut(s)	232, 665, 698, 845, 886
MboII	GAAGA	7 cut(s)	125, 371, 776, 903, 908, 938, 950
MflI	RGATCY	2 cut(s)	665, 698
MhlI	GDGCHC	2 cut(s)	271, 336
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	6 cut(s)	304, 368, 446, 617, 672, 780
MluNI	TGGCCA	1 cut(s)	141
Mly113I	GGCGCC	1 cut(s)	213
MlyI	GAGTC	2 cut(s)	228, 777
MmeI	TCCRAC	1 cut(s)	280
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	1 cut(s)	684
Msp20I	TGGCCA	1 cut(s)	141
MspI	CCGG	4 cut(s)	155, 199, 216, 906
MspR9I	CCNGG	2 cut(s)	155, 750
MvaI	CCWGG	1 cut(s)	750
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	6 cut(s)	111, 171, 590, 825, 959, 968
NarI	GGCGCC	1 cut(s)	213
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	5 cut(s)	232, 665, 698, 845, 886
NlaIII	CATG	6 cut(s)	140, 206, 430, 632, 647, 698
NlaIV	GGNNCC	3 cut(s)	214, 433, 700
NruI	TCGCGA	1 cut(s)	105
NspI	RCATGY	2 cut(s)	206, 632
PfeI	GAWTC	6 cut(s)	315, 362, 374, 440, 726, 899
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	2 cut(s)	87, 838
PleI	GAGTC	2 cut(s)	227, 776
PluTI	GGCGCC	1 cut(s)	216
PmaCI	CACGTG	2 cut(s)	145, 244
PmlI	CACGTG	2 cut(s)	145, 244
PpsI	GAGTC	2 cut(s)	227, 776
Ppu21I	YACGTR	2 cut(s)	145, 244
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	748
PspCI	CACGTG	2 cut(s)	145, 244
PspFI	CCCAGC	2 cut(s)	175, 526
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	3 cut(s)	214, 433, 700
PsuI	RGATCY	2 cut(s)	665, 698
RruI	TCGCGA	1 cut(s)	105
SacI	GAGCTC	1 cut(s)	336
SalI	GTCGAC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	2 cut(s)	86, 837
Sau3AI	GATC	5 cut(s)	232, 665, 698, 845, 886
SchI	GAGTC	2 cut(s)	228, 777
ScrFI	CCNGG	2 cut(s)	155, 750
SduI	GDGCHC	2 cut(s)	271, 336
SfaNI	GCATC	1 cut(s)	473
SfcI	CTRYAG	1 cut(s)	863
SfoI	GGCGCC	1 cut(s)	214
SmlI	CTYRAG	2 cut(s)	493, 678
SmoI	CTYRAG	2 cut(s)	493, 678
Sse9I	AATT	6 cut(s)	304, 368, 446, 617, 672, 780
SsiI	CCGC	3 cut(s)	223, 399, 872
SspDI	GGCGCC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	469
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	153, 748
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	761, 824
TaiI	ACGT	4 cut(s)	97, 147, 246, 945
TaqI	TCGA	5 cut(s)	238, 288, 615, 889, 902
TasI	AATT	6 cut(s)	304, 368, 446, 617, 672, 780
TfiI	GAWTC	6 cut(s)	315, 362, 374, 440, 726, 899
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	1 cut(s)	56
TseI	GCWGC	2 cut(s)	85, 836
TspDTI	ATGAA	3 cut(s)	125, 442, 931
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	56
Van91I	CCANNNNNTGG	1 cut(s)	533
XapI	RAATTY	3 cut(s)	368, 446, 780
XceI	RCATGY	2 cut(s)	206, 632
XcmI	CCANNNNNNNNNTGG	3 cut(s)	350, 530, 534
XmiI	GTMKAC	2 cut(s)	238, 794
XspI	CTAG	1 cut(s)	469
ZraI	GACGTC	2 cut(s)	95, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.