Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006753

Physical Location & Seq

Genomic Coordinates Forward (+)

8451880 .. 8453768

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12220.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCGGAAAGCAATGCGGTAATTGGGCTCTCGTGGGAGCCAAAGTTGCCGGCTTTTTCATCGGCCTCCAAAAATGGAGGTGGGTCTGGCTCCAAACCTCGCCCCGAAGGCAATCCGCTTCGGCAACCCAGCACGCAGCTTGTCGATGGCCTCTTCGTTCCGCCGAATGACCCGGTAAAGCGGAACAAATTGGCCAAGAAGCAGATCAGGGACACTGCTGGAACAAGCTGGTTTAACATGCCTGCACCAACCATGACCCCGGAGTTGCAGAAAGATCTCCAATTACTAAAGTTAAGGAATGTTATGGATCCAAAGAGACACTACAAGAAGGGTGATGCACAACCTAACAAGTATTTCCAGGTAGGGACAATAATAGAGTCCCCATTAGATTTCTTCTCAGGCAGACTTACAAAGAAGGAAAGGAAGGTGTCCCTTGCAGAGGAAGTCCTTTCCGATCGTAACCTTGGGAACTACAGAAAGCGGAAGGTTCGTGAGATAGAAGAGAAAAACCGGCCAGGCGGAAATGAAAAATGGAAGATTAAGGGGAAGGGGACGTATCAGCGTGCAAAGCAAAGAAGGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fcf2

Protein Analysis

195

Amino Acids

21.98

Weight (kDa)

10.3

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54770 AT1G54770 AT5G30495 AT5G30495
fragaria_vesca	FvH4_4g21490
malus_domestica	MD07G1065600.v1.1 MD13G1140700.v1.1 MD16G1136700.v1.1
prunus_persica	Prupe.1G105700_v2.0.a1 Prupe.1G105700_v2.0.a1
pyrus_communis	pycom07g05010 pycom13g12220 pycom16g12050
rosa_chinensis	RchiOBHm_Chr4g0427441 RchiOBHm_Chr4g0427481
rosa_laevigata	RLG00000007244
rosa_multiflora	Rmu_sc0000603.1_g000009 Rmu_ssc0000351.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369100
rosa_rugosa	Rorug04G0208400 Rorug04G0218100
rosa_samantha	Rh4AG274300 Rh4BG280000 Rh4CG295100 Rh4DG277400
rosa_wichuraiana	Rw4G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	5, 17, 116, 161, 181, 481, 519
AclWI	GGATC	2 cut(s)	302, 315
AcoI	YGGCCR	2 cut(s)	192, 512
AfiI	CCNNNNNNNGG	1 cut(s)	439
AjnI	CCWGG	2 cut(s)	357, 514
AluBI	AGCT	2 cut(s)	139, 228
AluI	AGCT	2 cut(s)	139, 228
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	2 cut(s)	302, 315
AoxI	GGCC	4 cut(s)	63, 148, 192, 512
ApeKI	GCWGC	1 cut(s)	136
AsuC2I	CCSGG	2 cut(s)	173, 260
AsuHPI	GGTGA	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	30
BauI	CACGAG	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	2 cut(s)	359, 516
BcnI	CCSGG	2 cut(s)	173, 260
BcoDI	GTCTC	1 cut(s)	310
BfmI	CTRYAG	1 cut(s)	472
BglI	GCCNNNNNGGC	1 cut(s)	108
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
Bme1390I	CCNGG	4 cut(s)	173, 260, 359, 516
BmiI	GGNNCC	3 cut(s)	39, 91, 309
BmrFI	CCNGG	4 cut(s)	173, 260, 359, 516
BmsI	GCATC	1 cut(s)	325
BpuMI	CCSGG	2 cut(s)	173, 260
BsaJI	CCNNGG	2 cut(s)	258, 463
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse118I	RCCGGY	2 cut(s)	49, 510
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	2 cut(s)	359, 516
BseDI	CCNNGG	2 cut(s)	258, 463
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	4 cut(s)	65, 150, 194, 514
BsiEI	CGRYCG	1 cut(s)	457
BsiSI	CCGG	4 cut(s)	50, 173, 260, 511
BslFI	GGGAC	5 cut(s)	224, 364, 379, 415, 565
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	310
BsmFI	GGGAC	5 cut(s)	224, 364, 379, 415, 565
BsnI	GGCC	4 cut(s)	65, 150, 194, 514
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	4 cut(s)	204, 274, 307, 454
BspACI	CCGC	7 cut(s)	5, 17, 116, 161, 181, 481, 519
BspANI	GGCC	4 cut(s)	65, 150, 194, 514
BspCNI	CTCAG	1 cut(s)	410
BspLI	GGNNCC	3 cut(s)	39, 91, 309
BspPI	GGATC	2 cut(s)	302, 315
BsrDI	GCAATG	1 cut(s)	19
BsrFI	RCCGGY	2 cut(s)	49, 510
BssAI	RCCGGY	2 cut(s)	49, 510
BssECI	CCNNGG	2 cut(s)	258, 463
BssMI	GATC	4 cut(s)	204, 274, 307, 454
BssSI	CACGAG	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	463
Bst2BI	CACGAG	1 cut(s)	31
Bst2UI	CCWGG	2 cut(s)	359, 516
Bst6I	CTCTTC	2 cut(s)	158, 495
BstC8I	GCNNGC	4 cut(s)	51, 134, 243, 564
BstDEI	CTNAG	1 cut(s)	397
BstENI	CCTNNNNNAGG	1 cut(s)	437
BstKTI	GATC	4 cut(s)	207, 277, 310, 457
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	4 cut(s)	204, 274, 307, 454
BstMCI	CGRYCG	1 cut(s)	457
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 108, 568, 577
BstNI	CCWGG	2 cut(s)	359, 516
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	4 cut(s)	171, 258, 357, 514
BstSFI	CTRYAG	1 cut(s)	472
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	2 cut(s)	274, 307
BstYI	RGATCY	2 cut(s)	274, 307
BsuRI	GGCC	4 cut(s)	65, 150, 194, 514
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	213, 580
Cac8I	GCNNGC	4 cut(s)	51, 134, 243, 564
Cfr10I	RCCGGY	2 cut(s)	49, 510
CviAII	CATG	2 cut(s)	238, 253
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	4 cut(s)	206, 276, 309, 456
DpnII	GATC	4 cut(s)	204, 274, 307, 454
EaeI	YGGCCR	2 cut(s)	192, 512
Eam1104I	CTCTTC	2 cut(s)	158, 495
EarI	CTCTTC	2 cut(s)	158, 495
EciI	GGCGGA	3 cut(s)	20, 150, 534
Eco130I	CCWWGG	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	30
EcoNI	CCTNNNNNAGG	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	357, 514
EcoT14I	CCWWGG	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	2 cut(s)	241, 256
FaiI	YATR	3 cut(s)	239, 254, 305
FaqI	GGGAC	5 cut(s)	224, 364, 379, 415, 565
FatI	CATG	2 cut(s)	237, 252
Fnu4HI	GCNGC	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	137
GluI	GCNGC	1 cut(s)	137
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	4 cut(s)	65, 150, 194, 514
HapII	CCGG	4 cut(s)	50, 173, 260, 511
Hin1II	CATG	2 cut(s)	241, 256
HinfI	GANTC	1 cut(s)	377
HpaII	CCGG	4 cut(s)	50, 173, 260, 511
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	1 cut(s)	491
HpyAV	CCTTC	7 cut(s)	101, 322, 409, 418, 478, 541, 570
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	5 cut(s)	245, 268, 338, 437, 566
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 108, 568, 577
HpyF3I	CTNAG	1 cut(s)	397
HpySE526I	ACGT	1 cut(s)	554
Hsp92II	CATG	2 cut(s)	241, 256
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
Kzo9I	GATC	4 cut(s)	204, 274, 307, 454
LmnI	GCTCC	2 cut(s)	37, 95
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	325
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	4 cut(s)	206, 276, 309, 456
MboI	GATC	4 cut(s)	204, 274, 307, 454
MboII	GAAGA	4 cut(s)	145, 385, 512, 547
MflI	RGATCY	2 cut(s)	274, 307
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	3 cut(s)	21, 188, 281
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	5 cut(s)	71, 76, 108, 161, 433
Mox20I	TGGCCA	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	3 cut(s)	234, 293, 540
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	4 cut(s)	50, 173, 260, 511
MspR9I	CCNGG	4 cut(s)	173, 260, 359, 516
MvaI	CCWGG	2 cut(s)	359, 516
MwoI	GCNNNNNNNGC	4 cut(s)	46, 108, 568, 577
NaeI	GCCGGC	1 cut(s)	51
NciI	CCSGG	2 cut(s)	173, 260
NdeII	GATC	4 cut(s)	204, 274, 307, 454
NgoMIV	GCCGGC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	241, 256
NlaIV	GGNNCC	3 cut(s)	39, 91, 309
NspI	RCATGY	1 cut(s)	241
PdiI	GCCGGC	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	138
Ple19I	CGATCG	1 cut(s)	457
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	2 cut(s)	357, 514
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	2 cut(s)	357, 514
PspN4I	GGNNCC	3 cut(s)	39, 91, 309
PsuI	RGATCY	2 cut(s)	274, 307
PvuI	CGATCG	1 cut(s)	457
SaqAI	TTAA	3 cut(s)	234, 293, 540
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	4 cut(s)	204, 274, 307, 454
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	4 cut(s)	173, 260, 359, 516
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	472
Sse9I	AATT	3 cut(s)	21, 188, 281
SsiI	CCGC	7 cut(s)	5, 17, 116, 161, 181, 481, 519
StyD4I	CCNGG	4 cut(s)	171, 258, 357, 514
StyI	CCWWGG	1 cut(s)	463
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	1 cut(s)	144
TasI	AATT	3 cut(s)	21, 188, 281
Tru1I	TTAA	3 cut(s)	234, 293, 540
Tru9I	TTAA	3 cut(s)	234, 293, 540
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	48, 540
TspRI	CASTG	1 cut(s)	220
XagI	CCTNNNNNAGG	1 cut(s)	437
XceI	RCATGY	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.