Prupe.1G105700_v2.0.a1

rRNA-processing protein fcf2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006753
Physical Location & Seq
Forward (+)
8486022 .. 8489043
3022 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G105700.1

Sequence Viewer

Length: 594 bp
ATGCCGGAAATCAAGGCAGTGATTGGTCTCTCATGGGAGCCAAAGTTGCCGACTTTTTCCTCAGCAGCCAAAAATGGAGGTGGGTCTGGTACCAAACCTCACGAAACTCACCGCGAAACCAATCAACTTTGGAAACCCAACACACAGCTTGTTGATGGCCTCTTTGTTCCACCAAATAACCCAACAAAGCTGAACAAGTTGCTTAAGAAGCAGCTCAAAGACACTGCTGGGACAAGTTGGTTTGACATGCCTGCACCAACCATGACCCCAGAGTTGCAGAAAGATCTCCAATTACTCAAGTTAAGGAATGTTATGGATCCAAAGAGACACTACAAGAAGGGTAATTCACAACCTAACAAGTATTTCCAGGTAGGGACGGTGATAGAGTCCCCGTTAGATTTCTTCACAGGCAGACTTACAAAGAAGGAAAGGAAGACAACCCTTGCAGAAGAGCTGCTTTCTGATCATACCCTTGGGAACTACAGAAAGCGGAAAGTGCGTGAGATAGAAGACAAAAACCGGCCGGGTGGAAATGAAAAATGGAAGATAAAGGGGAAGAAGTCGTATCAGCGTGCAAAGCAAAGAAGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf2

Protein Analysis

198

Amino Acids

22.62

Weight (kDa)

10.16

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 89
AccII CGCG 1 cut(s) 114
AciI CCGC 2 cut(s) 112, 490
AclWI GGATC 2 cut(s) 311, 324
AcoI YGGCCR 1 cut(s) 521
AfaI GTAC 1 cut(s) 91
AflII CTTAAG 1 cut(s) 203
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 4 cut(s) 148, 190, 214, 454
AluI AGCT 4 cut(s) 148, 190, 214, 454
Alw26I GTCTC 2 cut(s) 32, 319
AlwI GGATC 2 cut(s) 311, 324
AoxI GGCC 2 cut(s) 157, 521
ApeKI GCWGC 3 cut(s) 65, 211, 454
Asp718I GGTACC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 2 cut(s) 101, 391
BamHI GGATCC 1 cut(s) 316
BanI GGYRCC 1 cut(s) 89
BbsI GAAGAC 2 cut(s) 440, 516
BbvCI CCTCAGC 1 cut(s) 61
BbvI GCAGC 3 cut(s) 77, 223, 441
BccI CCATC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 368
BclI TGATCA 1 cut(s) 463
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 2 cut(s) 32, 319
BfmI CTRYAG 1 cut(s) 481
BfrI CTTAAG 1 cut(s) 203
BglII AGATCT 1 cut(s) 283
BisI GCNGC 3 cut(s) 66, 212, 455
BlsI GCNGC 3 cut(s) 67, 213, 456
Bme1390I CCNGG 2 cut(s) 368, 525
BmiI GGNNCC 3 cut(s) 39, 91, 318
BmrFI CCNGG 2 cut(s) 368, 525
BpiI GAAGAC 2 cut(s) 440, 516
Bpu10I CCTNAGC 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 472
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bse118I RCCGGY 1 cut(s) 519
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 472
BseMII CTCAG 1 cut(s) 75
BseX3I CGGCCG 1 cut(s) 521
BseXI GCAGC 3 cut(s) 77, 223, 441
BseYI CCCAGC 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 237
Bsh1236I CGCG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 524
BshFI GGCC 2 cut(s) 159, 523
BshNI GGYRCC 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 524
BsiSI CCGG 3 cut(s) 5, 520, 524
BslFI GGGAC 3 cut(s) 244, 373, 388
BsmAI GTCTC 2 cut(s) 32, 319
BsmFI GGGAC 3 cut(s) 244, 373, 388
BsnI GGCC 2 cut(s) 159, 523
Bso31I GGTCTC 1 cut(s) 32
Bsp143I GATC 3 cut(s) 283, 316, 463
BspACI CCGC 2 cut(s) 112, 490
BspANI GGCC 2 cut(s) 159, 523
BspCNI CTCAG 1 cut(s) 74
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 3 cut(s) 39, 91, 318
BspPI GGATC 2 cut(s) 311, 324
BspQI GCTCTTC 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 89
BspTI CTTAAG 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 519
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 1 cut(s) 472
BssMI GATC 3 cut(s) 283, 316, 463
BssT1I CCWWGG 1 cut(s) 472
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 444
BstAFI CTTAAG 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 252, 573
BstDEI CTNAG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 3 cut(s) 286, 319, 466
BstMAI GTCTC 2 cut(s) 32, 319
BstMBI GATC 3 cut(s) 283, 316, 463
BstMCI CGRYCG 1 cut(s) 524
BstMWI GCNNNNNNNGC 5 cut(s) 46, 208, 496, 577, 586
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 2 cut(s) 366, 523
BstSFI CTRYAG 1 cut(s) 481
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 77, 223, 441
BstV2I GAAGAC 2 cut(s) 440, 516
BstX2I RGATCY 2 cut(s) 283, 316
BstYI RGATCY 2 cut(s) 283, 316
BstZI CGGCCG 1 cut(s) 521
BsuRI GGCC 2 cut(s) 159, 523
BtsI GCAGTG 2 cut(s) 24, 222
BtsIMutI CAGTG 2 cut(s) 24, 222
Cac8I GCNNGC 2 cut(s) 252, 573
Cfr10I RCCGGY 1 cut(s) 519
Csp6I GTAC 1 cut(s) 90
CviAII CATG 3 cut(s) 33, 247, 262
CviJI RGCY 9 cut(s) 40, 68, 148, 159, 190, 214, 454, 523, 589
CviKI_1 RGCY 9 cut(s) 40, 68, 148, 159, 190, 214, 454, 523, 589
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 61
DpnI GATC 3 cut(s) 285, 318, 465
DpnII GATC 3 cut(s) 283, 316, 463
EaeI YGGCCR 1 cut(s) 521
EagI CGGCCG 1 cut(s) 521
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
EclXI CGGCCG 1 cut(s) 521
Eco130I CCWWGG 1 cut(s) 472
Eco31I GGTCTC 1 cut(s) 32
Eco52I CGGCCG 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 3 cut(s) 36, 250, 265
FaiI YATR 5 cut(s) 34, 248, 263, 314, 468
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FaqI GGGAC 3 cut(s) 244, 373, 388
FatI CATG 3 cut(s) 32, 246, 261
FbaI TGATCA 1 cut(s) 463
Fnu4HI GCNGC 3 cut(s) 66, 212, 455
Fsp4HI GCNGC 3 cut(s) 66, 212, 455
GluI GCNGC 3 cut(s) 66, 212, 455
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 159, 523
HapII CCGG 3 cut(s) 5, 520, 524
Hin1II CATG 3 cut(s) 36, 250, 265
HinfI GANTC 1 cut(s) 386
HpaII CCGG 3 cut(s) 5, 520, 524
HphI GGTGA 2 cut(s) 101, 391
Hpy188I TCNGA 2 cut(s) 463, 593
Hpy188III TCNNGA 1 cut(s) 101
HpyAV CCTTC 3 cut(s) 331, 418, 579
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4V TGCA 4 cut(s) 254, 277, 446, 575
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 208, 496, 577, 586
HpyF3I CTNAG 1 cut(s) 61
Hsp92II CATG 3 cut(s) 36, 250, 265
KpnI GGTACC 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 3 cut(s) 283, 316, 463
LguI GCTCTTC 1 cut(s) 444
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 3 cut(s) 77, 223, 441
MalI GATC 3 cut(s) 285, 318, 465
MboI GATC 3 cut(s) 283, 316, 463
MboII GAAGA 6 cut(s) 394, 445, 461, 521, 556, 568
MflI RGATCY 2 cut(s) 283, 316
MluCI AATT 2 cut(s) 290, 343
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 4 cut(s) 70, 71, 108, 170
MseI TTAA 2 cut(s) 204, 302
MspCI CTTAAG 1 cut(s) 203
MspI CCGG 3 cut(s) 5, 520, 524
MspR9I CCNGG 2 cut(s) 368, 525
MvaI CCWGG 1 cut(s) 368
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 5 cut(s) 46, 208, 496, 577, 586
NciI CCSGG 1 cut(s) 525
NdeII GATC 3 cut(s) 283, 316, 463
NlaIII CATG 3 cut(s) 36, 250, 265
NlaIV GGNNCC 3 cut(s) 39, 91, 318
NspI RCATGY 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 444
PkrI GCNGC 3 cut(s) 67, 213, 456
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 366
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 3 cut(s) 39, 91, 318
PsuI RGATCY 2 cut(s) 283, 316
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 2 cut(s) 204, 302
SatI GCNGC 3 cut(s) 66, 212, 455
Sau3AI GATC 3 cut(s) 283, 316, 463
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 2 cut(s) 368, 525
SetI ASST 8 cut(s) 82, 100, 150, 192, 216, 355, 372, 456
SfcI CTRYAG 1 cut(s) 481
SmlI CTYRAG 2 cut(s) 203, 296
SmoI CTYRAG 2 cut(s) 203, 296
Sse9I AATT 2 cut(s) 290, 343
SsiI CCGC 2 cut(s) 112, 490
StyD4I CCNGG 2 cut(s) 366, 523
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 1 cut(s) 379
TasI AATT 2 cut(s) 290, 343
Tru1I TTAA 2 cut(s) 204, 302
Tru9I TTAA 2 cut(s) 204, 302
TscAI CASTG 2 cut(s) 24, 229
TseI GCWGC 3 cut(s) 65, 211, 454
TspDTI ATGAA 1 cut(s) 549
TspRI CASTG 2 cut(s) 24, 229
Vha464I CTTAAG 1 cut(s) 203
XceI RCATGY 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.