Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Reverse (-)

20452593 .. 20454266

Gene Structure 1674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAGTGATACAATGCCTGAGATCGTGTCTCCTTTAGTAGCTGAAAACTCTCAAGAACAAGAAGAAAGTGTGTTAATTTCATTGGATATTGAAGAAGACAAGTTGTTTCTCTTACATTTCATCATAGGAACTTACTTTGGACCAGATTTAAGAAAACAACATCATCGTCCAAAGCAATCAGCTTTTCAGATTCAAGCGTTGAAGAATGTTGTGGTAGATGAGTTAAGTGGCTCACTTATGAAGAGAGCTGAGCTAGAACGTGTGTATTATCACATTATTAGAAATGTTGATCCGTCTCTAGTCATGAAGCCGAAAAAGTTACGTGAATATTTCAATGCGAAACGCAATGATTCGAACAGGGATTACCCTCTTTTCGTGGATCTTTTTCCGCGAAAATTGCACCCTGAAACCCATGTTAGGCATAAGTTTAAGTTTATCCGGAGCATTGTGTTCATTAATGATCCAGATACTTCTTGTATGAGAGAAGAATGTGTTGCGCGGTTTAAGCGGCTTACGGGATTGGATAGCTTTGCTTTGAGCCTTAGTGTTGATGTAACTAAAAGTAACGGCGTTGTTGCAGCTAATGAGGTTAAGGTTGAGATTGATGAGAGCGTGGAACCTGTGAAAGAGGATAATGCGGGTACTTGCACTAGCGGTGAAGAAAGTGATGTTGCTGCAAAACCTGAGGTGAAATCTGAAGCTCATGGTGGACTAATGGTGGGACTGATGGACATTGGTGAATGTGATGACGCTTATCTCTTCCGTGTATCGCTTCCTGGTGTGAAAAGAGATGAAAGATATTTTAGCTGTGAAGTAGAAGACAATGGGAAGGTACTAGTTAGAGGAGTCACTACAACAGGCGGGAAGCGAGTTAAACGGTATTCTCATGTGTTTGAAATGCAAACGCGGAGTCTCTGCCCTCCCGGTAACTTTTCTGTCTCGTTCCGCCTCCCCGGTCCTGTCCATCCACACGAGTTTTCTGGCAACTTTGGAACAGATGGAATTCTTGAAGGAGTCGTAATGAAAAACTTGCAGAAACAAACTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

349

Amino Acids

39.39

Weight (kDa)

6.04

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	391, 499, 907
AccIII	TCCGGA	1 cut(s)	438
AciI	CCGC	8 cut(s)	389, 499, 508, 638, 654, 861, 907, 946
AclWI	GGATC	3 cut(s)	284, 387, 455
AcsI	RAATTY	1 cut(s)	1002
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	2 cut(s)	643, 834
AfiI	CCNNNNNNNGG	1 cut(s)	417
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	6 cut(s)	92, 194, 202, 334, 896, 1010
AhlI	ACTAGT	1 cut(s)	835
AjnI	CCWGG	1 cut(s)	775
AluBI	AGCT	8 cut(s)	41, 182, 248, 253, 528, 581, 701, 807
AluI	AGCT	8 cut(s)	41, 182, 248, 253, 528, 581, 701, 807
Alw26I	GTCTC	4 cut(s)	33, 300, 917, 943
AlwI	GGATC	3 cut(s)	284, 387, 455
Aor13HI	TCCGGA	1 cut(s)	438
ApeKI	GCWGC	2 cut(s)	578, 674
ApoI	RAATTY	1 cut(s)	1002
ArsI	GACNNNNNNTTYG	2 cut(s)	895, 927
AseI	ATTAAT	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	2 cut(s)	140, 956
AsuC2I	CCSGG	2 cut(s)	924, 954
AsuHPI	GGTGA	3 cut(s)	668, 700, 749
AsuII	TTCGAA	1 cut(s)	353
AvaII	GGWCC	2 cut(s)	140, 956
AxyI	CCTNAGG	1 cut(s)	684
BauI	CACGAG	1 cut(s)	971
BbsI	GAAGAC	2 cut(s)	102, 825
BbvI	GCAGC	2 cut(s)	590, 661
BccI	CCATC	3 cut(s)	721, 972, 992
BceAI	ACGGC	1 cut(s)	583
BciT130I	CCWGG	1 cut(s)	777
BcnI	CCSGG	2 cut(s)	924, 954
BcoDI	GTCTC	4 cut(s)	33, 300, 917, 943
BcuI	ACTAGT	1 cut(s)	835
BfaI	CTAG	4 cut(s)	254, 299, 651, 836
BisI	GCNGC	3 cut(s)	509, 579, 675
BlpI	GCTNAGC	1 cut(s)	249
BlsI	GCNGC	3 cut(s)	510, 580, 676
Bme1390I	CCNGG	3 cut(s)	777, 924, 954
Bme18I	GGWCC	2 cut(s)	140, 956
BmgT120I	GGNCC	2 cut(s)	140, 956
BmiI	GGNNCC	1 cut(s)	618
BmrFI	CCNGG	3 cut(s)	777, 924, 954
BpiI	GAAGAC	2 cut(s)	102, 825
Bpu1102I	GCTNAGC	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	36
BpuMI	CCSGG	2 cut(s)	924, 954
BsaAI	YACGTR	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	952
BsaWI	WCCGGW	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse21I	CCTNAGG	1 cut(s)	684
Bse3DI	GCAATG	1 cut(s)	352
BseAI	TCCGGA	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	777
BseDI	CCNNGG	1 cut(s)	952
BseGI	GGATG	1 cut(s)	964
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	3 cut(s)	9, 240, 675
BseRI	GAGGAG	1 cut(s)	858
BseXI	GCAGC	2 cut(s)	590, 661
Bsh1236I	CGCG	3 cut(s)	391, 499, 907
BsiSI	CCGG	3 cut(s)	439, 924, 954
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	4 cut(s)	33, 300, 917, 943
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	735
Bsp119I	TTCGAA	1 cut(s)	353
Bsp13I	TCCGGA	1 cut(s)	438
Bsp143I	GATC	4 cut(s)	21, 289, 379, 460
Bsp1720I	GCTNAGC	1 cut(s)	249
BspACI	CCGC	8 cut(s)	389, 499, 508, 638, 654, 861, 907, 946
BspCNI	CTCAG	3 cut(s)	10, 241, 676
BspEI	TCCGGA	1 cut(s)	438
BspFNI	CGCG	3 cut(s)	391, 499, 907
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	618
BspPI	GGATC	3 cut(s)	284, 387, 455
BspT104I	TTCGAA	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	952
BssMI	GATC	4 cut(s)	21, 289, 379, 460
BssSI	CACGAG	1 cut(s)	971
Bst2BI	CACGAG	1 cut(s)	971
Bst2UI	CCWGG	1 cut(s)	777
Bst4CI	ACNGT	2 cut(s)	879, 1045
Bst6I	CTCTTC	2 cut(s)	236, 764
BstBAI	YACGTR	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	353
BstDEI	CTNAG	4 cut(s)	18, 249, 542, 684
BstF5I	GGATG	1 cut(s)	964
BstFNI	CGCG	3 cut(s)	391, 499, 907
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	4 cut(s)	24, 292, 382, 463
BstMAI	GTCTC	4 cut(s)	33, 300, 917, 943
BstMBI	GATC	4 cut(s)	21, 289, 379, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	397, 505
BstNI	CCWGG	1 cut(s)	777
BstSCI	CCNGG	3 cut(s)	775, 922, 952
BstUI	CGCG	3 cut(s)	391, 499, 907
BstV1I	GCAGC	2 cut(s)	590, 661
BstV2I	GAAGAC	2 cut(s)	102, 825
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
Bsu36I	CCTNAGG	1 cut(s)	684
BtsCI	GGATG	1 cut(s)	964
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	140, 956
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	2 cut(s)	642, 833
CviAII	CATG	4 cut(s)	304, 413, 704, 887
CviQI	GTAC	2 cut(s)	642, 833
DdeI	CTNAG	4 cut(s)	18, 249, 542, 684
DpnI	GATC	4 cut(s)	23, 291, 381, 462
DpnII	GATC	4 cut(s)	21, 289, 379, 460
Eam1104I	CTCTTC	2 cut(s)	236, 764
EarI	CTCTTC	2 cut(s)	236, 764
EciI	GGCGGA	1 cut(s)	935
Eco47I	GGWCC	2 cut(s)	140, 956
Eco57I	CTGAAG	1 cut(s)	717
Eco81I	CCTNAGG	1 cut(s)	684
EcoRI	GAATTC	1 cut(s)	1002
EcoRII	CCWGG	1 cut(s)	775
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	4 cut(s)	307, 416, 707, 890
FaiI	YATR	8 cut(s)	125, 239, 305, 414, 423, 479, 705, 888
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	4 cut(s)	303, 412, 703, 886
FauI	CCCGC	2 cut(s)	631, 854
Fnu4HI	GCNGC	3 cut(s)	509, 579, 675
FokI	GGATG	1 cut(s)	951
Fsp4HI	GCNGC	3 cut(s)	509, 579, 675
FspBI	CTAG	4 cut(s)	254, 299, 651, 836
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	3 cut(s)	509, 579, 675
HapII	CCGG	3 cut(s)	439, 924, 954
HgaI	GACGC	1 cut(s)	758
HhaI	GCGC	1 cut(s)	499
Hin1II	CATG	4 cut(s)	307, 416, 707, 890
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HinfI	GANTC	5 cut(s)	190, 350, 846, 910, 1014
HpaII	CCGG	3 cut(s)	439, 924, 954
HphI	GGTGA	3 cut(s)	668, 700, 749
Hpy166II	GTNNAC	1 cut(s)	710
Hpy188I	TCNGA	2 cut(s)	189, 697
Hpy188III	TCNNGA	5 cut(s)	53, 304, 439, 464, 1007
Hpy8I	GTNNAC	1 cut(s)	710
HpyAV	CCTTC	2 cut(s)	823, 1004
HpyCH4III	ACNGT	2 cut(s)	879, 1045
HpyCH4IV	ACGT	2 cut(s)	259, 322
HpyCH4V	TGCA	6 cut(s)	400, 578, 648, 677, 901, 1033
HpyF10VI	GCNNNNNNNGC	2 cut(s)	397, 505
HpyF3I	CTNAG	4 cut(s)	18, 249, 542, 684
HpySE526I	ACGT	2 cut(s)	259, 322
Hsp92II	CATG	4 cut(s)	307, 416, 707, 890
HspAI	GCGC	1 cut(s)	497
Kpn2I	TCCGGA	1 cut(s)	438
Kzo9I	GATC	4 cut(s)	21, 289, 379, 460
LmnI	GCTCC	1 cut(s)	441
Lsp1109I	GCAGC	2 cut(s)	590, 661
MaeI	CTAG	4 cut(s)	254, 299, 651, 836
MaeII	ACGT	2 cut(s)	259, 322
MaeIII	GTNAC	5 cut(s)	318, 553, 563, 847, 926
MalI	GATC	4 cut(s)	23, 291, 381, 462
MboI	GATC	4 cut(s)	21, 289, 379, 460
MboII	GAAGA	9 cut(s)	74, 104, 107, 214, 253, 497, 671, 751, 830
MflI	RGATCY	1 cut(s)	379
MluCI	AATT	3 cut(s)	75, 395, 1002
MlyI	GAGTC	3 cut(s)	855, 919, 1023
MnlI	CCTC	7 cut(s)	378, 580, 622, 679, 836, 930, 959
MroI	TCCGGA	1 cut(s)	438
MseI	TTAA	8 cut(s)	74, 149, 224, 429, 456, 504, 591, 873
MspI	CCGG	3 cut(s)	439, 924, 954
MspR9I	CCNGG	3 cut(s)	777, 924, 954
MvaI	CCWGG	1 cut(s)	777
MvnI	CGCG	3 cut(s)	391, 499, 907
MwoI	GCNNNNNNNGC	2 cut(s)	397, 505
NciI	CCSGG	2 cut(s)	924, 954
NdeII	GATC	4 cut(s)	21, 289, 379, 460
NlaIII	CATG	4 cut(s)	307, 416, 707, 890
NlaIV	GGNNCC	1 cut(s)	618
NmuCI	GTSAC	1 cut(s)	847
NspV	TTCGAA	1 cut(s)	353
PagI	TCATGA	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	190, 350
PkrI	GCNGC	3 cut(s)	510, 580, 676
PleI	GAGTC	3 cut(s)	854, 918, 1022
PpsI	GAGTC	3 cut(s)	854, 918, 1022
Ppu21I	YACGTR	1 cut(s)	323
PshBI	ATTAAT	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	775
PspGI	CCWGG	1 cut(s)	775
PspN4I	GGNNCC	1 cut(s)	618
PspPI	GGNCC	2 cut(s)	140, 956
PsrI	GAACNNNNNNTAC	2 cut(s)	347, 379
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	2 cut(s)	643, 834
RsaNI	GTAC	2 cut(s)	642, 833
SaqAI	TTAA	8 cut(s)	74, 149, 224, 429, 456, 504, 591, 873
SatI	GCNGC	3 cut(s)	509, 579, 675
Sau3AI	GATC	4 cut(s)	21, 289, 379, 460
Sau96I	GGNCC	2 cut(s)	140, 956
SchI	GAGTC	3 cut(s)	855, 919, 1023
ScrFI	CCNGG	3 cut(s)	777, 924, 954
SfuI	TTCGAA	1 cut(s)	353
SinI	GGWCC	2 cut(s)	140, 956
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
SpeI	ACTAGT	1 cut(s)	835
Sse9I	AATT	3 cut(s)	75, 395, 1002
SsiI	CCGC	8 cut(s)	389, 499, 508, 638, 654, 861, 907, 946
SspI	AATATT	1 cut(s)	329
SspMI	CTAG	4 cut(s)	254, 299, 651, 836
StyD4I	CCNGG	3 cut(s)	775, 922, 952
TaaI	ACNGT	2 cut(s)	879, 1045
TaiI	ACGT	2 cut(s)	262, 325
TaqI	TCGA	1 cut(s)	353
TasI	AATT	3 cut(s)	75, 395, 1002
TauI	GCSGC	1 cut(s)	511
TfiI	GAWTC	2 cut(s)	190, 350
Tru1I	TTAA	8 cut(s)	74, 149, 224, 429, 456, 504, 591, 873
Tru9I	TTAA	8 cut(s)	74, 149, 224, 429, 456, 504, 591, 873
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	2 cut(s)	578, 674
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	7 cut(s)	69, 109, 254, 320, 442, 807, 1037
TspGWI	ACGGA	2 cut(s)	282, 752
VpaK11BI	GGWCC	2 cut(s)	140, 956
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	1 cut(s)	1002
XspI	CTAG	4 cut(s)	254, 299, 651, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.