Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Forward (+)

18305298 .. 18309368

Gene Structure 4071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0206600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGTCTCAGTCGGGGAAATTGATGCCGAATCTGGATCAGCAGAGCACCAAAATGCTCAATCTCACCGTCCTCCAGAGAATCGATCCCTTCATCGAAGAGATTCTCATCACCGCCGCCCACGTCACCTTCTACGAATTCAACATCGACAATAACCAATGGAGTCGCAAGGATGTTGAAGGCTCTCTCTTTGTCGTTAAGAGGAATACTCAGCCTCGCTTCCAGTTCATTGTTATGAATCGGCGTAACACAGATAACCTAGTGGAGAATCTCTTGGGAGATTTTGAGTATGAAGTTCAAGTTCCATATTTGTTGTATAGGAATGCGGCTCAGGAAGTTAATGGCATTTGGTTTTATAATTCACGTGAATGTGAGGAAGTTGCAAATCTCTTCACTAGGATTCTTAACGCATACTCAAAGGTTCCTCCAAAGTCCAAAGTAGCTTCTAGCAAAAGTGAATTTGAAGAACTTGAAGCAGTCCCATCGATGTTGGTCATGGAAGGGCCACTGGAGCCATCAGTGAATGTCACTACTGCCAGTGAACCTCCTGAAGATTCATCCTTTGTGAACTACTTGGCAGCTATGAATATTGGAGGTAACACTTCAAACATTGCAAATTCAAGACAGCCCTATCCTTCTTCTGGAACCGCTCCTCCGTCTTCCTATGCACCCAATGTCGTTTCATCTCCCGCACCATCCCCACTAGTACCTGCCCTTTCCCTTTCAGCCTCATCTACACAAACACCTTTGCCCGGTACATCTGATTTAACAACCAGCAGCAGCCGGGTGGCTAATCTTATAAAGCCATCTTCCTTTTTCCCCCTACCTGCTTCCTCATCTTCAGTGATTGTACCTCCCATTTCTTCAGCTGTGCCTGTTCCAACTGCCGGTGCTCTTCATCCTCCTGTGAATTTGCAACGCCCATATGGCACTCCAATGCTTCAACCCTTTCCACCACCAACGCCACCTCCATCTTTAACTCCTAATGCCCCTCCCACTCCCAACGATGGGTCTCATATAAGCAGAGAAAAAGTTCGGGATGCACTTCTGATGCTTGTTCAGGACGATCAATTCATTGACATGTTTCACCATGCATTGCTGAAAGTGCACCATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

371

Amino Acids

40.62

Weight (kDa)

5.41

Isoelectric Point (pI)

67.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DCP1	PF06058	17 - 131	3.4e-46	Dcp1-like decapping family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	354, 797
Acc36I	ACCTGC	2 cut(s)	715, 832
AccBSI	CCGCTC	1 cut(s)	647
AciI	CCGC	5 cut(s)	111, 114, 323, 645, 687
AclWI	GGATC	2 cut(s)	42, 77
AcsI	RAATTY	4 cut(s)	134, 455, 613, 907
AcuI	CTGAAG	3 cut(s)	567, 822, 846
AcvI	CACGTG	1 cut(s)	362
AfaI	GTAC	3 cut(s)	705, 754, 849
AfiI	CCNNNNNNNGG	5 cut(s)	638, 749, 884, 1004, 1005
AflIII	ACRYGT	1 cut(s)	1077
AgsI	TTSAA	8 cut(s)	139, 176, 296, 461, 470, 603, 618, 941
AhlI	ACTAGT	1 cut(s)	700
AjiI	CACGTC	1 cut(s)	121
AloI	GAACNNNNNNTCC	2 cut(s)	634, 666
AluBI	AGCT	3 cut(s)	440, 578, 866
AluI	AGCT	3 cut(s)	440, 578, 866
Alw21I	GWGCWC	3 cut(s)	47, 892, 1107
Alw26I	GTCTC	2 cut(s)	9, 1014
Alw44I	GTGCAC	1 cut(s)	1103
AlwI	GGATC	2 cut(s)	42, 77
AoxI	GGCC	1 cut(s)	500
ApaLI	GTGCAC	1 cut(s)	1103
ApeKI	GCWGC	3 cut(s)	575, 774, 777
ApoI	RAATTY	4 cut(s)	134, 455, 613, 907
Asp700I	GAANNNNTTC	2 cut(s)	99, 1029
AspS9I	GGNCC	1 cut(s)	500
AsuC2I	CCSGG	2 cut(s)	750, 782
AsuHPI	GGTGA	4 cut(s)	55, 100, 115, 1076
BaeGI	GKGCMC	1 cut(s)	1107
BbrPI	CACGTG	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	3 cut(s)	47, 892, 1107
BbvI	GCAGC	3 cut(s)	587, 786, 789
BccI	CCATC	6 cut(s)	487, 520, 700, 811, 976, 998
BcgI	CGANNNNNNTGC	2 cut(s)	462, 496
BcnI	CCSGG	2 cut(s)	750, 782
BcoDI	GTCTC	2 cut(s)	9, 1014
BcuI	ACTAGT	1 cut(s)	700
BfaI	CTAG	4 cut(s)	257, 393, 444, 701
BfuAI	ACCTGC	2 cut(s)	715, 832
BglI	GCCNNNNNGGC	1 cut(s)	924
BisI	GCNGC	5 cut(s)	114, 324, 576, 775, 778
BlsI	GCNGC	5 cut(s)	115, 325, 577, 776, 779
Bme1390I	CCNGG	2 cut(s)	750, 782
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	3 cut(s)	420, 510, 643
BmrFI	CCNGG	2 cut(s)	750, 782
BmsI	GCATC	3 cut(s)	12, 1027, 1038
BpiI	GAAGAC	1 cut(s)	648
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BpmI	CTGGAG	2 cut(s)	56, 527
Bpu10I	CCTNAGC	1 cut(s)	327
BpuMI	CCSGG	2 cut(s)	750, 782
Bsa29I	ATCGAT	2 cut(s)	81, 482
BsaAI	YACGTR	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	1014
BsaXI	ACNNNNNCTCC	4 cut(s)	634, 664, 949, 979
Bsc4I	CCNNNNNNNGG	5 cut(s)	638, 749, 884, 1004, 1005
Bse118I	RCCGGY	1 cut(s)	884
Bse1I	ACTGG	3 cut(s)	220, 510, 534
Bse3DI	GCAATG	2 cut(s)	606, 1091
Bse8I	GATNNNNATC	1 cut(s)	104
BseCI	ATCGAT	2 cut(s)	81, 482
BseGI	GGATG	5 cut(s)	175, 554, 692, 895, 1042
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	5 cut(s)	638, 749, 884, 1004, 1005
BseMI	GCAATG	2 cut(s)	606, 1091
BseMII	CTCAG	3 cut(s)	20, 221, 341
BseNI	ACTGG	3 cut(s)	220, 510, 534
BseRI	GAGGAG	1 cut(s)	639
BseSI	GKGCMC	1 cut(s)	1107
BseXI	GCAGC	3 cut(s)	587, 786, 789
BshFI	GGCC	1 cut(s)	502
BshVI	ATCGAT	2 cut(s)	81, 482
BsiHKAI	GWGCWC	3 cut(s)	47, 892, 1107
BsiSI	CCGG	3 cut(s)	750, 781, 885
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	5 cut(s)	638, 749, 884, 1004, 1005
BsmAI	GTCTC	2 cut(s)	9, 1014
BsmFI	GGGAC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	502
Bso31I	GGTCTC	1 cut(s)	1014
Bsp1286I	GDGCHC	3 cut(s)	47, 892, 1107
Bsp143I	GATC	3 cut(s)	34, 82, 1063
BspACI	CCGC	5 cut(s)	111, 114, 323, 645, 687
BspANI	GGCC	1 cut(s)	502
BspCNI	CTCAG	3 cut(s)	19, 220, 340
BspDI	ATCGAT	2 cut(s)	81, 482
BspLI	GGNNCC	3 cut(s)	420, 510, 643
BspMI	ACCTGC	2 cut(s)	715, 832
BspPI	GGATC	2 cut(s)	42, 77
BspQI	GCTCTTC	1 cut(s)	897
BspTNI	GGTCTC	1 cut(s)	1014
BsrBI	CCGCTC	1 cut(s)	647
BsrDI	GCAATG	2 cut(s)	606, 1091
BsrFI	RCCGGY	1 cut(s)	884
BsrI	ACTGG	3 cut(s)	220, 510, 534
BssAI	RCCGGY	1 cut(s)	884
BssMI	GATC	3 cut(s)	34, 82, 1063
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	3 cut(s)	90, 392, 897
BstBAI	YACGTR	1 cut(s)	362
BstDEI	CTNAG	3 cut(s)	6, 207, 327
BstF5I	GGATG	5 cut(s)	175, 554, 692, 895, 1042
BstKTI	GATC	3 cut(s)	37, 85, 1066
BstMAI	GTCTC	2 cut(s)	9, 1014
BstMBI	GATC	3 cut(s)	34, 82, 1063
BstMWI	GCNNNNNNNGC	3 cut(s)	508, 924, 1102
BstNSI	RCATGY	1 cut(s)	1081
BstSCI	CCNGG	2 cut(s)	748, 780
BstSLI	GKGCMC	1 cut(s)	1107
BstV1I	GCAGC	3 cut(s)	587, 786, 789
BstV2I	GAAGAC	1 cut(s)	648
Bsu15I	ATCGAT	2 cut(s)	81, 482
BsuRI	GGCC	1 cut(s)	502
BsuTUI	ATCGAT	2 cut(s)	81, 482
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	5 cut(s)	175, 554, 692, 895, 1042
BtsIMutI	CAGTG	4 cut(s)	503, 522, 541, 846
BveI	ACCTGC	2 cut(s)	715, 832
Cfr10I	RCCGGY	1 cut(s)	884
Cfr13I	GGNCC	1 cut(s)	500
ClaI	ATCGAT	2 cut(s)	81, 482
Csp6I	GTAC	3 cut(s)	704, 753, 848
CviAII	CATG	4 cut(s)	493, 1078, 1088, 1113
CviQI	GTAC	3 cut(s)	704, 753, 848
DdeI	CTNAG	3 cut(s)	6, 207, 327
DpnI	GATC	3 cut(s)	36, 84, 1065
DpnII	GATC	3 cut(s)	34, 82, 1063
Eam1104I	CTCTTC	3 cut(s)	90, 392, 897
EarI	CTCTTC	3 cut(s)	90, 392, 897
Eco31I	GGTCTC	1 cut(s)	1014
Eco57I	CTGAAG	3 cut(s)	567, 822, 846
Eco72I	CACGTG	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	134
EcoT22I	ATGCAT	1 cut(s)	1093
FaeI	CATG	4 cut(s)	496, 1081, 1091, 1116
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	4 cut(s)	492, 1077, 1087, 1112
FauI	CCCGC	1 cut(s)	694
FauNDI	CATATG	1 cut(s)	922
Fnu4HI	GCNGC	5 cut(s)	114, 324, 576, 775, 778
FokI	GGATG	5 cut(s)	182, 541, 679, 882, 1049
Fsp4HI	GCNGC	5 cut(s)	114, 324, 576, 775, 778
FspBI	CTAG	4 cut(s)	257, 393, 444, 701
GluI	GCNGC	5 cut(s)	114, 324, 576, 775, 778
GsuI	CTGGAG	2 cut(s)	56, 527
HaeIII	GGCC	1 cut(s)	502
HapII	CCGG	3 cut(s)	750, 781, 885
Hin1II	CATG	4 cut(s)	496, 1081, 1091, 1116
HinfI	GANTC	8 cut(s)	28, 78, 100, 160, 235, 265, 397, 551
HpaII	CCGG	3 cut(s)	750, 781, 885
HphI	GGTGA	4 cut(s)	55, 100, 115, 1076
Hpy166II	GTNNAC	3 cut(s)	539, 565, 1105
Hpy188I	TCNGA	2 cut(s)	760, 1047
Hpy188III	TCNNGA	8 cut(s)	32, 73, 329, 545, 618, 639, 1034, 1058
Hpy8I	GTNNAC	3 cut(s)	539, 565, 1105
HpyAV	CCTTC	5 cut(s)	97, 136, 170, 491, 642
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	2 cut(s)	120, 361
HpyCH4V	TGCA	7 cut(s)	380, 611, 665, 913, 1040, 1091, 1105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	508, 924, 1102
HpyF3I	CTNAG	3 cut(s)	6, 207, 327
HpySE526I	ACGT	2 cut(s)	120, 361
Hsp92II	CATG	4 cut(s)	496, 1081, 1091, 1116
Kzo9I	GATC	3 cut(s)	34, 82, 1063
LguI	GCTCTTC	1 cut(s)	897
LmnI	GCTCC	2 cut(s)	508, 652
Lsp1109I	GCAGC	3 cut(s)	587, 786, 789
LweI	GCATC	3 cut(s)	12, 1027, 1038
MaeI	CTAG	4 cut(s)	257, 393, 444, 701
MaeII	ACGT	2 cut(s)	120, 361
MaeIII	GTNAC	4 cut(s)	121, 242, 523, 593
MalI	GATC	3 cut(s)	36, 84, 1065
MbiI	CCGCTC	1 cut(s)	647
MboI	GATC	3 cut(s)	34, 82, 1063
MhlI	GDGCHC	3 cut(s)	47, 892, 1107
MluCI	AATT	7 cut(s)	17, 134, 355, 455, 613, 907, 1067
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	902
Mph1103I	ATGCAT	1 cut(s)	1093
MroXI	GAANNNNTTC	2 cut(s)	99, 1029
MseI	TTAA	5 cut(s)	195, 336, 402, 764, 974
MslI	CAYNNNNRTG	5 cut(s)	50, 230, 364, 932, 1076
MspA1I	CMGCKG	1 cut(s)	866
MspI	CCGG	3 cut(s)	750, 781, 885
MspR9I	CCNGG	2 cut(s)	750, 782
Mva1269I	GAATGC	1 cut(s)	325
MwoI	GCNNNNNNNGC	3 cut(s)	508, 924, 1102
NciI	CCSGG	2 cut(s)	750, 782
NdeI	CATATG	1 cut(s)	922
NdeII	GATC	3 cut(s)	34, 82, 1063
NlaIII	CATG	4 cut(s)	496, 1081, 1091, 1116
NlaIV	GGNNCC	3 cut(s)	420, 510, 643
NmuCI	GTSAC	2 cut(s)	121, 523
NsiI	ATGCAT	1 cut(s)	1093
NspI	RCATGY	1 cut(s)	1081
PciI	ACATGT	1 cut(s)	1077
PciSI	GCTCTTC	1 cut(s)	897
PctI	GAATGC	1 cut(s)	325
PdmI	GAANNNNTTC	2 cut(s)	99, 1029
PfeI	GAWTC	7 cut(s)	28, 78, 100, 235, 265, 397, 551
PkrI	GCNGC	5 cut(s)	115, 325, 577, 776, 779
PleI	GAGTC	1 cut(s)	168
PmaCI	CACGTG	1 cut(s)	362
PmlI	CACGTG	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	168
Ppu21I	YACGTR	1 cut(s)	362
PscI	ACATGT	1 cut(s)	1077
PsiI	TTATAA	2 cut(s)	354, 797
PspCI	CACGTG	1 cut(s)	362
PspN4I	GGNNCC	3 cut(s)	420, 510, 643
PspPI	GGNCC	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	866
RsaI	GTAC	3 cut(s)	705, 754, 849
RsaNI	GTAC	3 cut(s)	704, 753, 848
RseI	CAYNNNNRTG	5 cut(s)	50, 230, 364, 932, 1076
SapI	GCTCTTC	1 cut(s)	897
SaqAI	TTAA	5 cut(s)	195, 336, 402, 764, 974
SatI	GCNGC	5 cut(s)	114, 324, 576, 775, 778
Sau3AI	GATC	3 cut(s)	34, 82, 1063
Sau96I	GGNCC	1 cut(s)	500
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	2 cut(s)	750, 782
SduI	GDGCHC	3 cut(s)	47, 892, 1107
SfaNI	GCATC	3 cut(s)	12, 1027, 1038
SmiMI	CAYNNNNRTG	5 cut(s)	50, 230, 364, 932, 1076
SpeI	ACTAGT	1 cut(s)	700
Sse9I	AATT	7 cut(s)	17, 134, 355, 455, 613, 907, 1067
SsiI	CCGC	5 cut(s)	111, 114, 323, 645, 687
SspI	AATATT	1 cut(s)	586
SspMI	CTAG	4 cut(s)	257, 393, 444, 701
StyD4I	CCNGG	2 cut(s)	748, 780
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	2 cut(s)	123, 364
TaqI	TCGA	4 cut(s)	81, 93, 144, 482
TasI	AATT	7 cut(s)	17, 134, 355, 455, 613, 907, 1067
TauI	GCSGC	2 cut(s)	116, 326
TfiI	GAWTC	7 cut(s)	28, 78, 100, 235, 265, 397, 551
Tru1I	TTAA	5 cut(s)	195, 336, 402, 764, 974
Tru9I	TTAA	5 cut(s)	195, 336, 402, 764, 974
TscAI	CASTG	4 cut(s)	510, 522, 541, 846
TseFI	GTSAC	2 cut(s)	121, 523
TseI	GCWGC	3 cut(s)	575, 774, 777
Tsp45I	GTSAC	2 cut(s)	121, 523
TspDTI	ATGAA	9 cut(s)	79, 214, 248, 303, 543, 596, 669, 884, 1060
TspGWI	ACGGA	1 cut(s)	642
TspRI	CASTG	4 cut(s)	510, 522, 541, 846
VneI	GTGCAC	1 cut(s)	1103
XapI	RAATTY	4 cut(s)	134, 455, 613, 907
XceI	RCATGY	1 cut(s)	1081
XmnI	GAANNNNTTC	2 cut(s)	99, 1029
XspI	CTAG	4 cut(s)	257, 393, 444, 701
Zsp2I	ATGCAT	1 cut(s)	1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.