Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Reverse (-)

28685681 .. 28687225

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGGTACCTACTTTGGCCCTGATGTTAAAGGAGACAGGCCCCCTAAGTCAGTGTTGCAGAGAATAGCTGAGGGACTTCCACCATATACTTTTGAGCAACTTGCTGGGTCCCAAATCAATACAGCAGAGGTGCAGCAGGTGTACTATTATGTTCTTAAGAAGGCTGATCAATCGGCCATTGTTAAATTACCTTTGTTGCACCAGTTCTTCCATGGTAATCTCCTCATCCAAGGACAAGATGACACAGCCAATTACCCTCAGTTTCCTGATCTCTTTCCTCCCCTACTTCACTACAATTCGCAGTCAAGAACCAGTTTTAACTTCTTTGAGAACATTGTACTTATCAGAAATCCGGAAATATATTACATTAAGCCAGAGGATATAGAAAGATTTAAGAGGCTAACTGGGCTTGAGGGTCTTGTTCTGGATAGAGATTCTGCAAGGTTGCATGCCAATACTGATGGAAGTACTTTATATGATATGACAGTCCATGAGCAGAAGTCTAATGGAGAATCACCTCCCATTAGATCATCTCGAAGCTCTACTGTAACAAAACATGTAGATGATCCTCTAGAATATAAGGATCCGCTGAAACAAGTGCATGTGGTGGCACCTACCAGTAGTGTGGAATATAATGGTACACCTGTTATGTACAGTTATATGGCTCCTTTGCCAACGGGAAATGGCTCTGATGTTACACAGAATGTTGATCCTGCTATGATTTTTCTTCCTTCTCCTCCAACTGAAAAAGAGTGGTCAAATATTGTAGCTGCAACCAAAAATGGATTTGCATTGACTGGGAGTGCGGCAACAGGACAGATAGGACCTACTATAGGACTCATTGACATTGGAGAGTCTGAGGACTCCTACCTGTTTCGTGTATCTCTTCCCGGAGTGAGAAGAGATGAAAGGGAATTCAGCTGTGAAGTTGAAAATGAAGGACAAGTATTGATAAGAGGGGTGACAATAACAGGTGAAAAGACGGTGTATAGGTACTCTCAGATGTTTGAGATGCAAACACAAAATCTTTGCCCTACCGGGCATTTTTCCATCTCATTCCAGCTGCCTGGTCCAGTTAATCCCCAGCAGTTTTCTGGTAATTTTGGCACTGACGGAATCCTTGAAGGAGTTGTGATGAAACGCTTAGATGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

385

Amino Acids

42.9

Weight (kDa)

5.19

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	127
Acc65I	GGTACC	1 cut(s)	5
AccB1I	GGYRCC	2 cut(s)	5, 610
AccIII	TCCGGA	1 cut(s)	352
AciI	CCGC	2 cut(s)	587, 806
AclWI	GGATC	4 cut(s)	560, 578, 591, 704
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	914
AfaI	GTAC	7 cut(s)	7, 143, 339, 469, 640, 653, 995
AfiI	CCNNNNNNNGG	1 cut(s)	833
AflII	CTTAAG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	2 cut(s)	932, 1124
AjnI	CCWGG	1 cut(s)	1066
AluBI	AGCT	5 cut(s)	68, 540, 770, 921, 1063
AluI	AGCT	5 cut(s)	68, 540, 770, 921, 1063
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	4 cut(s)	560, 578, 591, 704
Aor13HI	TCCGGA	1 cut(s)	352
AoxI	GGCC	3 cut(s)	16, 38, 174
ApeKI	GCWGC	3 cut(s)	133, 770, 1063
ApoI	RAATTY	1 cut(s)	914
Asp718I	GGTACC	1 cut(s)	5
AspS9I	GGNCC	5 cut(s)	17, 39, 108, 824, 1070
AsuC2I	CCSGG	2 cut(s)	891, 1039
AsuHPI	GGTGA	3 cut(s)	507, 973, 986
AvaII	GGWCC	3 cut(s)	108, 824, 1070
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
BamHI	GGATCC	1 cut(s)	583
BanI	GGYRCC	2 cut(s)	5, 610
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	145, 757, 1050
BccI	CCATC	2 cut(s)	455, 1058
BciT130I	CCWGG	1 cut(s)	1068
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	2 cut(s)	891, 1039
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	831
BfrI	CTTAAG	1 cut(s)	155
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	4 cut(s)	134, 771, 807, 1064
BlsI	GCNGC	4 cut(s)	135, 772, 808, 1065
BmcAI	AGTACT	1 cut(s)	469
Bme1390I	CCNGG	3 cut(s)	891, 1039, 1068
Bme18I	GGWCC	3 cut(s)	108, 824, 1070
BmgT120I	GGNCC	5 cut(s)	17, 39, 108, 824, 1070
BmiI	GGNNCC	7 cut(s)	7, 41, 109, 110, 585, 612, 666
BmrFI	CCNGG	3 cut(s)	891, 1039, 1068
BmrI	ACTGGG	2 cut(s)	414, 807
BmsI	GCATC	1 cut(s)	1002
BmuI	ACTGGG	2 cut(s)	414, 807
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	2 cut(s)	891, 1039
BsaJI	CCNNGG	2 cut(s)	211, 229
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	1 cut(s)	833
Bse1I	ACTGG	6 cut(s)	202, 312, 409, 618, 802, 1073
BseAI	TCCGGA	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	1068
BseDI	CCNNGG	2 cut(s)	211, 229
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	833
BseMII	CTCAG	4 cut(s)	60, 272, 849, 1013
BseNI	ACTGG	6 cut(s)	202, 312, 409, 618, 802, 1073
BseRI	GAGGAG	2 cut(s)	212, 726
BseXI	GCAGC	3 cut(s)	145, 757, 1050
BseYI	CCCAGC	2 cut(s)	104, 1083
BsgI	GTGCAG	1 cut(s)	152
BshFI	GGCC	3 cut(s)	18, 40, 176
BshNI	GGYRCC	2 cut(s)	5, 610
BsiSI	CCGG	3 cut(s)	353, 891, 1038
BslFI	GGGAC	2 cut(s)	87, 94
BslI	CCNNNNNNNGG	1 cut(s)	833
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	2 cut(s)	87, 94
BsnI	GGCC	3 cut(s)	18, 40, 176
Bsp13I	TCCGGA	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	651
Bsp143I	GATC	6 cut(s)	166, 268, 527, 565, 583, 709
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	2 cut(s)	587, 806
BspANI	GGCC	3 cut(s)	18, 40, 176
BspCNI	CTCAG	4 cut(s)	61, 271, 850, 1012
BspEI	TCCGGA	1 cut(s)	352
BspLI	GGNNCC	7 cut(s)	7, 41, 109, 110, 585, 612, 666
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	4 cut(s)	560, 578, 591, 704
BspT107I	GGYRCC	2 cut(s)	5, 610
BspTI	CTTAAG	1 cut(s)	155
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	6 cut(s)	202, 312, 409, 618, 802, 1073
BssECI	CCNNGG	2 cut(s)	211, 229
BssMI	GATC	6 cut(s)	166, 268, 527, 565, 583, 709
BssT1I	CCWWGG	2 cut(s)	211, 229
Bst2UI	CCWGG	1 cut(s)	1068
Bst4CI	ACNGT	4 cut(s)	487, 547, 656, 985
Bst6I	CTCTTC	2 cut(s)	891, 895
BstAFI	CTTAAG	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	651
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	6 cut(s)	45, 69, 258, 858, 999, 1144
BstDSI	CCRYGG	1 cut(s)	211
BstENI	CCTNNNNNAGG	1 cut(s)	831
BstF5I	GGATG	1 cut(s)	225
BstKTI	GATC	6 cut(s)	169, 271, 530, 568, 586, 712
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	6 cut(s)	166, 268, 527, 565, 583, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstNI	CCWGG	1 cut(s)	1068
BstNSI	RCATGY	3 cut(s)	452, 560, 605
BstSCI	CCNGG	3 cut(s)	889, 1037, 1066
BstSFI	CTRYAG	1 cut(s)	831
BstV1I	GCAGC	3 cut(s)	145, 757, 1050
BstX2I	RGATCY	1 cut(s)	583
BstXI	CCANNNNNNTGG	2 cut(s)	625, 1067
BstYI	RGATCY	1 cut(s)	583
BsuRI	GGCC	3 cut(s)	18, 40, 176
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	57, 1107
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	450
Cfr13I	GGNCC	5 cut(s)	17, 39, 108, 824, 1070
Csp6I	GTAC	7 cut(s)	6, 142, 338, 468, 639, 652, 994
CviAII	CATG	5 cut(s)	212, 449, 491, 557, 602
CviQI	GTAC	7 cut(s)	6, 142, 338, 468, 639, 652, 994
DdeI	CTNAG	6 cut(s)	45, 69, 258, 858, 999, 1144
DpnI	GATC	6 cut(s)	168, 270, 529, 567, 585, 711
DpnII	GATC	6 cut(s)	166, 268, 527, 565, 583, 709
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	2 cut(s)	891, 895
EarI	CTCTTC	2 cut(s)	891, 895
Eco130I	CCWWGG	2 cut(s)	211, 229
Eco47I	GGWCC	3 cut(s)	108, 824, 1070
EcoNI	CCTNNNNNAGG	1 cut(s)	831
EcoO109I	RGGNCCY	3 cut(s)	39, 108, 824
EcoRI	GAATTC	1 cut(s)	914
EcoRII	CCWGG	1 cut(s)	1066
EcoT14I	CCWWGG	2 cut(s)	211, 229
ErhI	CCWWGG	2 cut(s)	211, 229
FaeI	CATG	5 cut(s)	215, 452, 494, 560, 605
FaqI	GGGAC	2 cut(s)	87, 94
FatI	CATG	5 cut(s)	211, 448, 490, 556, 601
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	4 cut(s)	134, 771, 807, 1064
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	4 cut(s)	134, 771, 807, 1064
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	4 cut(s)	134, 771, 807, 1064
GsaI	CCCAGC	2 cut(s)	108, 1087
HaeIII	GGCC	3 cut(s)	18, 40, 176
HapII	CCGG	3 cut(s)	353, 891, 1038
Hin1II	CATG	5 cut(s)	215, 452, 494, 560, 605
HinfI	GANTC	6 cut(s)	434, 512, 837, 854, 863, 1116
HpaII	CCGG	3 cut(s)	353, 891, 1038
HphI	GGTGA	3 cut(s)	507, 973, 986
Hpy166II	GTNNAC	2 cut(s)	142, 641
Hpy188I	TCNGA	4 cut(s)	347, 691, 859, 1002
Hpy188III	TCNNGA	6 cut(s)	266, 306, 353, 425, 534, 572
Hpy8I	GTNNAC	2 cut(s)	142, 641
HpyAV	CCTTC	4 cut(s)	154, 741, 932, 1118
HpyCH4III	ACNGT	4 cut(s)	487, 547, 656, 985
HpyCH4V	TGCA	9 cut(s)	58, 133, 199, 440, 448, 601, 773, 791, 1015
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
HpyF3I	CTNAG	6 cut(s)	45, 69, 258, 858, 999, 1144
Hsp92II	CATG	5 cut(s)	215, 452, 494, 560, 605
KflI	GGGWCCC	1 cut(s)	108
Kpn2I	TCCGGA	1 cut(s)	352
KpnI	GGTACC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	6 cut(s)	166, 268, 527, 565, 583, 709
LmnI	GCTCC	1 cut(s)	670
Lsp1109I	GCAGC	3 cut(s)	145, 757, 1050
LweI	GCATC	1 cut(s)	1002
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	3 cut(s)	547, 694, 961
MalI	GATC	6 cut(s)	168, 270, 529, 567, 585, 711
MboI	GATC	6 cut(s)	166, 268, 527, 565, 583, 709
MboII	GAAGA	4 cut(s)	199, 719, 878, 912
MflI	RGATCY	1 cut(s)	583
MluCI	AATT	5 cut(s)	185, 250, 295, 914, 1099
MlyI	GAGTC	3 cut(s)	831, 857, 863
MmeI	TCCRAC	1 cut(s)	764
MroI	TCCGGA	1 cut(s)	352
MseI	TTAA	7 cut(s)	27, 156, 183, 318, 369, 393, 1077
MslI	CAYNNNNRTG	1 cut(s)	561
MspA1I	CMGCKG	3 cut(s)	589, 921, 1063
MspCI	CTTAAG	1 cut(s)	155
MspI	CCGG	3 cut(s)	353, 891, 1038
MspR9I	CCNGG	3 cut(s)	891, 1039, 1068
MvaI	CCWGG	1 cut(s)	1068
MwoI	GCNNNNNNNGC	1 cut(s)	406
NciI	CCSGG	2 cut(s)	891, 1039
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	6 cut(s)	166, 268, 527, 565, 583, 709
NlaIII	CATG	5 cut(s)	215, 452, 494, 560, 605
NlaIV	GGNNCC	7 cut(s)	7, 41, 109, 110, 585, 612, 666
NmuCI	GTSAC	1 cut(s)	961
NspI	RCATGY	3 cut(s)	452, 560, 605
PaeI	GCATGC	1 cut(s)	452
PaqCI	CACCTGC	1 cut(s)	127
PciI	ACATGT	1 cut(s)	556
PfeI	GAWTC	3 cut(s)	434, 512, 1116
PfoI	TCCNGGA	1 cut(s)	889
PkrI	GCNGC	4 cut(s)	135, 772, 808, 1065
PleI	GAGTC	3 cut(s)	831, 857, 862
PpsI	GAGTC	3 cut(s)	831, 857, 862
PpuMI	RGGWCCY	2 cut(s)	108, 824
PscI	ACATGT	1 cut(s)	556
Psp5II	RGGWCCY	2 cut(s)	108, 824
Psp6I	CCWGG	1 cut(s)	1066
PspFI	CCCAGC	2 cut(s)	104, 1083
PspGI	CCWGG	1 cut(s)	1066
PspN4I	GGNNCC	7 cut(s)	7, 41, 109, 110, 585, 612, 666
PspPI	GGNCC	5 cut(s)	17, 39, 108, 824, 1070
PspPPI	RGGWCCY	2 cut(s)	108, 824
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	2 cut(s)	921, 1063
RsaI	GTAC	7 cut(s)	7, 143, 339, 469, 640, 653, 995
RsaNI	GTAC	7 cut(s)	6, 142, 338, 468, 639, 652, 994
RseI	CAYNNNNRTG	1 cut(s)	561
SaqAI	TTAA	7 cut(s)	27, 156, 183, 318, 369, 393, 1077
SatI	GCNGC	4 cut(s)	134, 771, 807, 1064
Sau3AI	GATC	6 cut(s)	166, 268, 527, 565, 583, 709
Sau96I	GGNCC	5 cut(s)	17, 39, 108, 824, 1070
ScaI	AGTACT	1 cut(s)	469
SchI	GAGTC	3 cut(s)	831, 857, 863
ScrFI	CCNGG	3 cut(s)	891, 1039, 1068
SfaNI	GCATC	1 cut(s)	1002
SfcI	CTRYAG	1 cut(s)	831
SinI	GGWCC	3 cut(s)	108, 824, 1070
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	2 cut(s)	155, 410
SmoI	CTYRAG	2 cut(s)	155, 410
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	5 cut(s)	185, 250, 295, 914, 1099
SsiI	CCGC	2 cut(s)	587, 806
SspI	AATATT	1 cut(s)	763
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	3 cut(s)	889, 1037, 1066
StyI	CCWWGG	2 cut(s)	211, 229
TaaI	ACNGT	4 cut(s)	487, 547, 656, 985
TaqI	TCGA	1 cut(s)	535
TasI	AATT	5 cut(s)	185, 250, 295, 914, 1099
TatI	WGTACW	4 cut(s)	141, 337, 467, 651
TauI	GCSGC	1 cut(s)	809
TfiI	GAWTC	3 cut(s)	434, 512, 1116
Tru1I	TTAA	7 cut(s)	27, 156, 183, 318, 369, 393, 1077
Tru9I	TTAA	7 cut(s)	27, 156, 183, 318, 369, 393, 1077
TscAI	CASTG	2 cut(s)	57, 1114
TseFI	GTSAC	1 cut(s)	961
TseI	GCWGC	3 cut(s)	133, 770, 1063
Tsp45I	GTSAC	1 cut(s)	961
TspDTI	ATGAA	3 cut(s)	921, 951, 1151
TspGWI	ACGGA	1 cut(s)	1128
TspRI	CASTG	2 cut(s)	57, 1114
Vha464I	CTTAAG	1 cut(s)	155
VpaK11BI	GGWCC	3 cut(s)	108, 824, 1070
XagI	CCTNNNNNAGG	1 cut(s)	831
XapI	RAATTY	1 cut(s)	914
XbaI	TCTAGA	1 cut(s)	571
XceI	RCATGY	3 cut(s)	452, 560, 605
XcmI	CCANNNNNNNNNTGG	2 cut(s)	209, 1091
XspI	CTAG	1 cut(s)	572
ZrmI	AGTACT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.