Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Forward (+)

20101954 .. 20105064

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCATAACCCAAATTCCATCAATCTACTCTCGTCGCTGCCAGTGGATGACTCATCTCAGGCTACAGAGTCTAATCCTAAGAATGAGCAAAGCAGGGTGGCAAATGATGATCAGCTGTTTCTCTTGTACTTCATAATGGGTACCTACTTTGGCCCTGATGTTAAAGGAGACAGGCCCCCTAAGTCAGTGTTGCAGAGAATAGCCGAGGGACTTGCACCATATAGTTTTGAACAACTAGCTGGGTCCCAAATCAATACAGTGGAGGTGCAGCAGGTGTACTATTATGTTCTTAGGAAGGCTGATCAATCTGCCATTGTTAAATTACCTTTGTTGCACCAGTTCTTCCATGGTAATCTCCTCATCCAAGGACAAGATGAAACAGCCAATTACCCTCAGTTTCCTGATCTCTTTCCTCCCCTACTTCACTACAATTCGCAGTCAAGAACCAATTTTAACTTCTTTGAGAACATTGTACTCATCAGAAATCCGGAAATATATTACATTAAGCCAGAGGATATAGAAAGATTTAAGAGGCTAACTGGGCTTGAGGGTCTTGTTCTGGATAGAGATTCTGCGAGGTTGCGTGCCAATGCTGATGGAAGTACTTTATATGATATGACAGTCCATGAGCAGAAGTCTAATGGAGAATCACCTCCCATTAGATCATCTCGAAGCTCTACTGTAACAAAACATGTAGATGATCCCCGAGAATATGAGGATCCTCCGAAACAAGTGCATGTCTTGGCACCTACCAGTAGTGTGGAATATAATGGTACACCTGTTATGTACAGTTATATGGCTCCTTTGCCGACTGGAAATGGCTCTGATGATACACAGAATGTTGATCCTGCTATGATTTTCTTCCTTCTCCTCCAACTGAAAAAGAGTGGTCAAATATTGGAATTCAGCTGTGAAGTTGAAAATGAAGGACAAGTATTGATAAGAGGGGTGACAATAACAGGTGAAAAGACGGTGTATAGGTACTCTCAGATGTTTGAGATGCAAACACAAAATCTTTGCCCTACTGGGCATTTTTCTATCTCATTCCAGCTGCCTGGTCCAGTTAATCCCCAGCAGTTTTCTGGTAATTTTGGCACTGACGGAATCCTTGAAGGAGTTGTGATGAAACGCTTAGATGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

381

Amino Acids

42.96

Weight (kDa)

5.11

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	262
Acc65I	GGTACC	1 cut(s)	140
AccB1I	GGYRCC	2 cut(s)	140, 745
AccIII	TCCGGA	1 cut(s)	487
AclWI	GGATC	4 cut(s)	695, 713, 726, 839
AcsI	RAATTY	2 cut(s)	13, 902
AfaI	GTAC	8 cut(s)	128, 142, 278, 474, 604, 775, 788, 983
AflIII	ACRYGT	1 cut(s)	691
AgsI	TTSAA	3 cut(s)	230, 920, 1112
AjnI	CCWGG	1 cut(s)	1054
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	5 cut(s)	115, 239, 675, 909, 1051
AluI	AGCT	5 cut(s)	115, 239, 675, 909, 1051
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	4 cut(s)	695, 713, 726, 839
Ama87I	CYCGRG	1 cut(s)	705
Aor13HI	TCCGGA	1 cut(s)	487
AoxI	GGCC	2 cut(s)	151, 173
ApeKI	GCWGC	3 cut(s)	37, 268, 1051
ApoI	RAATTY	2 cut(s)	13, 902
Asp718I	GGTACC	1 cut(s)	140
AspS9I	GGNCC	4 cut(s)	152, 174, 243, 1058
AsuHPI	GGTGA	3 cut(s)	642, 961, 974
AvaI	CYCGRG	1 cut(s)	705
AvaII	GGWCC	2 cut(s)	243, 1058
BaeI	ACNNNNGTAYC	2 cut(s)	765, 798
BamHI	GGATCC	1 cut(s)	718
BanI	GGYRCC	2 cut(s)	140, 745
BbvI	GCAGC	3 cut(s)	24, 280, 1038
BccI	CCATC	2 cut(s)	26, 590
BcgI	CGANNNNNNTGC	4 cut(s)	194, 228, 715, 749
BciT130I	CCWGG	1 cut(s)	1056
BclI	TGATCA	2 cut(s)	109, 301
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	3 cut(s)	38, 269, 1052
BlsI	GCNGC	3 cut(s)	39, 270, 1053
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	1 cut(s)	1056
Bme18I	GGWCC	2 cut(s)	243, 1058
BmeT110I	CYCGRG	1 cut(s)	705
BmgT120I	GGNCC	4 cut(s)	152, 174, 243, 1058
BmiI	GGNNCC	7 cut(s)	142, 176, 244, 245, 720, 747, 801
BmrFI	CCNGG	1 cut(s)	1056
BmrI	ACTGGG	2 cut(s)	549, 1035
BmsI	GCATC	1 cut(s)	990
BmuI	ACTGGG	2 cut(s)	549, 1035
BpuEI	CTTGAG	1 cut(s)	566
BsaJI	CCNNGG	3 cut(s)	204, 346, 364
BsaWI	WCCGGW	1 cut(s)	487
Bse1I	ACTGG	7 cut(s)	41, 337, 544, 753, 817, 1030, 1061
BseAI	TCCGGA	1 cut(s)	487
BseBI	CCWGG	1 cut(s)	1056
BseDI	CCNNGG	3 cut(s)	204, 346, 364
BseGI	GGATG	2 cut(s)	52, 360
BseMII	CTCAG	3 cut(s)	71, 407, 1001
BseNI	ACTGG	7 cut(s)	41, 337, 544, 753, 817, 1030, 1061
BseRI	GAGGAG	2 cut(s)	347, 860
BseXI	GCAGC	3 cut(s)	24, 280, 1038
BseYI	CCCAGC	2 cut(s)	239, 1071
BsgI	GTGCAG	1 cut(s)	287
BshFI	GGCC	2 cut(s)	153, 175
BshNI	GGYRCC	2 cut(s)	140, 745
BsiHKCI	CYCGRG	1 cut(s)	705
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	2 cut(s)	222, 229
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	2 cut(s)	222, 229
BsnI	GGCC	2 cut(s)	153, 175
BsoBI	CYCGRG	1 cut(s)	705
Bsp13I	TCCGGA	1 cut(s)	487
Bsp1407I	TGTACA	1 cut(s)	786
Bsp143I	GATC	7 cut(s)	109, 301, 403, 662, 700, 718, 844
Bsp19I	CCATGG	1 cut(s)	346
BspANI	GGCC	2 cut(s)	153, 175
BspCNI	CTCAG	3 cut(s)	70, 406, 1000
BspEI	TCCGGA	1 cut(s)	487
BspLI	GGNNCC	7 cut(s)	142, 176, 244, 245, 720, 747, 801
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	4 cut(s)	695, 713, 726, 839
BspT107I	GGYRCC	2 cut(s)	140, 745
BsrGI	TGTACA	1 cut(s)	786
BsrI	ACTGG	7 cut(s)	41, 337, 544, 753, 817, 1030, 1061
BssECI	CCNNGG	3 cut(s)	204, 346, 364
BssMI	GATC	7 cut(s)	109, 301, 403, 662, 700, 718, 844
BssT1I	CCWWGG	2 cut(s)	346, 364
Bst2UI	CCWGG	1 cut(s)	1056
Bst4CI	ACNGT	5 cut(s)	259, 622, 682, 791, 973
BstAUI	TGTACA	1 cut(s)	786
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	7 cut(s)	57, 78, 180, 290, 393, 987, 1132
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	2 cut(s)	52, 360
BstKTI	GATC	7 cut(s)	112, 304, 406, 665, 703, 721, 847
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	7 cut(s)	109, 301, 403, 662, 700, 718, 844
BstMWI	GCNNNNNNNGC	1 cut(s)	541
BstNI	CCWGG	1 cut(s)	1056
BstNSI	RCATGY	2 cut(s)	695, 740
BstSCI	CCNGG	1 cut(s)	1054
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	3 cut(s)	24, 280, 1038
BstX2I	RGATCY	1 cut(s)	718
BstXI	CCANNNNNNTGG	2 cut(s)	760, 1055
BstYI	RGATCY	1 cut(s)	718
BsuRI	GGCC	2 cut(s)	153, 175
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	52, 360
BtsIMutI	CAGTG	4 cut(s)	48, 192, 264, 1095
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	585
Cfr13I	GGNCC	4 cut(s)	152, 174, 243, 1058
Csp6I	GTAC	8 cut(s)	127, 141, 277, 473, 603, 774, 787, 982
CviAII	CATG	4 cut(s)	347, 626, 692, 737
CviQI	GTAC	8 cut(s)	127, 141, 277, 473, 603, 774, 787, 982
DdeI	CTNAG	7 cut(s)	57, 78, 180, 290, 393, 987, 1132
DpnI	GATC	7 cut(s)	111, 303, 405, 664, 702, 720, 846
DpnII	GATC	7 cut(s)	109, 301, 403, 662, 700, 718, 844
Eco130I	CCWWGG	2 cut(s)	346, 364
Eco47I	GGWCC	2 cut(s)	243, 1058
Eco88I	CYCGRG	1 cut(s)	705
EcoO109I	RGGNCCY	2 cut(s)	174, 243
EcoRI	GAATTC	1 cut(s)	902
EcoRII	CCWGG	1 cut(s)	1054
EcoT14I	CCWWGG	2 cut(s)	346, 364
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	346, 364
FaeI	CATG	4 cut(s)	350, 629, 695, 740
FaqI	GGGAC	2 cut(s)	222, 229
FatI	CATG	4 cut(s)	346, 625, 691, 736
FbaI	TGATCA	2 cut(s)	109, 301
Fnu4HI	GCNGC	3 cut(s)	38, 269, 1052
FokI	GGATG	2 cut(s)	59, 347
Fsp4HI	GCNGC	3 cut(s)	38, 269, 1052
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	3 cut(s)	38, 269, 1052
GsaI	CCCAGC	2 cut(s)	243, 1075
HaeIII	GGCC	2 cut(s)	153, 175
HapII	CCGG	1 cut(s)	488
Hin1II	CATG	4 cut(s)	350, 629, 695, 740
HinfI	GANTC	5 cut(s)	50, 68, 569, 647, 1104
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	3 cut(s)	642, 961, 974
Hpy166II	GTNNAC	2 cut(s)	277, 776
Hpy188I	TCNGA	4 cut(s)	482, 726, 826, 990
Hpy188III	TCNNGA	5 cut(s)	401, 441, 488, 560, 669
Hpy8I	GTNNAC	2 cut(s)	277, 776
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	4 cut(s)	289, 875, 920, 1106
HpyCH4III	ACNGT	5 cut(s)	259, 622, 682, 791, 973
HpyCH4V	TGCA	7 cut(s)	4, 193, 215, 268, 334, 736, 1003
HpyF10VI	GCNNNNNNNGC	1 cut(s)	541
HpyF3I	CTNAG	7 cut(s)	57, 78, 180, 290, 393, 987, 1132
Hsp92II	CATG	4 cut(s)	350, 629, 695, 740
KflI	GGGWCCC	1 cut(s)	243
Kpn2I	TCCGGA	1 cut(s)	487
KpnI	GGTACC	1 cut(s)	144
Ksp22I	TGATCA	2 cut(s)	109, 301
Kzo9I	GATC	7 cut(s)	109, 301, 403, 662, 700, 718, 844
LmnI	GCTCC	1 cut(s)	805
Lsp1109I	GCAGC	3 cut(s)	24, 280, 1038
LweI	GCATC	1 cut(s)	990
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	2 cut(s)	682, 949
MalI	GATC	7 cut(s)	111, 303, 405, 664, 702, 720, 846
MboI	GATC	7 cut(s)	109, 301, 403, 662, 700, 718, 844
MboII	GAAGA	2 cut(s)	334, 853
MflI	RGATCY	1 cut(s)	718
MluCI	AATT	7 cut(s)	13, 320, 385, 430, 448, 902, 1087
MlyI	GAGTC	2 cut(s)	44, 77
MmeI	TCCRAC	1 cut(s)	898
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	487
MseI	TTAA	6 cut(s)	162, 318, 453, 504, 528, 1065
MslI	CAYNNNNRTG	1 cut(s)	696
MspA1I	CMGCKG	3 cut(s)	115, 909, 1051
MspI	CCGG	1 cut(s)	488
MspR9I	CCNGG	1 cut(s)	1056
MvaI	CCWGG	1 cut(s)	1056
MwoI	GCNNNNNNNGC	1 cut(s)	541
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	7 cut(s)	109, 301, 403, 662, 700, 718, 844
NlaIII	CATG	4 cut(s)	350, 629, 695, 740
NlaIV	GGNNCC	7 cut(s)	142, 176, 244, 245, 720, 747, 801
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	949
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	695, 740
PaqCI	CACCTGC	1 cut(s)	262
PciI	ACATGT	1 cut(s)	691
PfeI	GAWTC	3 cut(s)	569, 647, 1104
PkrI	GCNGC	3 cut(s)	39, 270, 1053
PleI	GAGTC	2 cut(s)	44, 76
PpsI	GAGTC	2 cut(s)	44, 76
PpuMI	RGGWCCY	1 cut(s)	243
PscI	ACATGT	1 cut(s)	691
Psp5II	RGGWCCY	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	1054
PspFI	CCCAGC	2 cut(s)	239, 1071
PspGI	CCWGG	1 cut(s)	1054
PspN4I	GGNNCC	7 cut(s)	142, 176, 244, 245, 720, 747, 801
PspPI	GGNCC	4 cut(s)	152, 174, 243, 1058
PspPPI	RGGWCCY	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	718
PvuII	CAGCTG	3 cut(s)	115, 909, 1051
RsaI	GTAC	8 cut(s)	128, 142, 278, 474, 604, 775, 788, 983
RsaNI	GTAC	8 cut(s)	127, 141, 277, 473, 603, 774, 787, 982
RseI	CAYNNNNRTG	1 cut(s)	696
SaqAI	TTAA	6 cut(s)	162, 318, 453, 504, 528, 1065
SatI	GCNGC	3 cut(s)	38, 269, 1052
Sau3AI	GATC	7 cut(s)	109, 301, 403, 662, 700, 718, 844
Sau96I	GGNCC	4 cut(s)	152, 174, 243, 1058
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	2 cut(s)	44, 77
ScrFI	CCNGG	1 cut(s)	1056
SfaNI	GCATC	1 cut(s)	990
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	2 cut(s)	243, 1058
SmiMI	CAYNNNNRTG	1 cut(s)	696
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	7 cut(s)	13, 320, 385, 430, 448, 902, 1087
SspI	AATATT	1 cut(s)	897
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	1054
StyI	CCWWGG	2 cut(s)	346, 364
TaaI	ACNGT	5 cut(s)	259, 622, 682, 791, 973
TaqI	TCGA	1 cut(s)	670
TasI	AATT	7 cut(s)	13, 320, 385, 430, 448, 902, 1087
TatI	WGTACW	5 cut(s)	126, 276, 472, 602, 786
TfiI	GAWTC	3 cut(s)	569, 647, 1104
Tru1I	TTAA	6 cut(s)	162, 318, 453, 504, 528, 1065
Tru9I	TTAA	6 cut(s)	162, 318, 453, 504, 528, 1065
TscAI	CASTG	4 cut(s)	48, 192, 264, 1102
TseFI	GTSAC	1 cut(s)	949
TseI	GCWGC	3 cut(s)	37, 268, 1051
Tsp45I	GTSAC	1 cut(s)	949
TspDTI	ATGAA	4 cut(s)	121, 390, 939, 1139
TspGWI	ACGGA	1 cut(s)	1116
TspRI	CASTG	4 cut(s)	48, 192, 264, 1102
VpaK11BI	GGWCC	2 cut(s)	243, 1058
XapI	RAATTY	2 cut(s)	13, 902
XceI	RCATGY	2 cut(s)	695, 740
XcmI	CCANNNNNNNNNTGG	2 cut(s)	344, 1079
XspI	CTAG	1 cut(s)	236
ZrmI	AGTACT	1 cut(s)	604
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.