Prupe.7G053900_v2.0.a1

Belongs to the small heat shock protein (HSP20) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
9232965 .. 9236649
3685 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G053900.7

Sequence Viewer

Length: 1287 bp
ATGGCAGCCGTGATGGATGGCTCATCTCAGGCTACACAATCTAATTCTGTCACAGGTTTAGATTCTAACAATGTCGAAAGGAGGATGGCAAATGATGATCAGCGCTTCCTCTTGTACTTCATTATGGGTACCTACTTTGGGCCTGGTCTTAAAGGAGAGAGCCCGCCAAAGTCAGTTCTGCAGAGAATAGCCGAGCGACTTCCACCATATACTTTTAAGCAACTAGGTGGATCCCACCTGAAAACTGCAGAGGTAGAGCAGGTGTACTATTATGTTCTTCGGAAGGCTCATAAATCTGCCATTGTTAAATTACCTGTGTTATACCAGTTCTTCCATGGTAACCTCCTTAGCCATCGAGAAGACACCACAGCCAACTACCCTCAGTTTCCTGATCTATTTCCTCTCCTACTCCACTCCCATTCACAGTTCAGTAACAGATACAATATCTTTGAGAACATCGTATTTATTAATAACCCAGAAACGCATTACATTAAGACAGAGGATATTGAAAGATTTAAGAGGCTAACTGGGCTGGAGGAGTTTCTTCTGGATAGAGATGCTGCAAGGCTGCATACTTATCCTGATGGAAGTGTTTCATATAATGTGTCGGTGCAGGAGCCGGAGTCCAATGGAGAGTCACCTCCCACTAGTTCTTGTCAAAGTTCTAGGGGAACAAAACATTTAGATAATCTCGTGGAATCGAATGATCCTCTGAAACATGTGCATGTCGTGGCACCTATCAGTAGTGTGCCATATAACGGTACGCCTGTGCTGTATAGTTATATGGCCCCTTTATCTACTAAAGATGACTCTGATCCTGTGGAGAAGGTCGATCCTGCTATGATTTTTCTTCCTTCTCTTCCAACTAAAAGAGAGTGGTCCAATATTGTAGCTGCCACCAGAGATGGATTTGCTTTAACTGGCAGTGCAGCAAAAAGGCAGGTGGGACCAACAATAGGGCTGATTGACATTGGAGAATGTGAGGATTCATACTTGTTTCGTGTATCTCTTCCTGGAGTGCGAAGAGATGAAAGGGACTTCAGCTGTGAAGTTGAAAATGAGGGCCGAGTGTTGATAAGAGGAGTGACAATAACAGGTGAGAAGACAGTCTACAGATACTCTCAGATGTTTGAAATGCGAACACAGAATCTGTGTCCATCAGGGCATTTTTCTATCTCATTTCAGCTGCCTGGTCCAGTTGATCCTCAGGAGTTTTCTGGTAATTTTGGGACAGACGGAATTCTGGAGGGTGTTGTGATGAAACGAAAAGATGTCAAATATGCTTAA

Protein Analysis

429

Amino Acids

48.04

Weight (kDa)

5.88

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 250, 931
Acc36I ACCTGC 2 cut(s) 250, 931
Acc65I GGTACC 1 cut(s) 128
AccB1I GGYRCC 2 cut(s) 128, 733
AccI GTMKAC 1 cut(s) 1110
AciI CCGC 1 cut(s) 164
AclWI GGATC 6 cut(s) 225, 238, 701, 809, 827, 1196
AcsI RAATTY 1 cut(s) 1239
AcuI CTGAAG 1 cut(s) 1024
AfaI GTAC 4 cut(s) 116, 130, 266, 763
AfeI AGCGCT 1 cut(s) 104
AfiI CCNNNNNNNGG 3 cut(s) 138, 758, 956
AflIII ACRYGT 1 cut(s) 718
AgsI TTSAA 3 cut(s) 509, 1055, 1133
AhlI ACTAGT 1 cut(s) 647
AjnI CCWGG 3 cut(s) 142, 1012, 1189
AluBI AGCT 3 cut(s) 893, 1044, 1186
AluI AGCT 3 cut(s) 893, 1044, 1186
AlwI GGATC 6 cut(s) 225, 238, 701, 809, 827, 1196
AlwNI CAGNNNCTG 1 cut(s) 1150
Aor51HI AGCGCT 1 cut(s) 104
AoxI GGCC 3 cut(s) 140, 786, 1063
ApeKI GCWGC 6 cut(s) 5, 560, 568, 893, 929, 1186
ApoI RAATTY 1 cut(s) 1239
AseI ATTAAT 1 cut(s) 468
Asp700I GAANNNNTTC 1 cut(s) 592
Asp718I GGTACC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 6 cut(s) 140, 787, 879, 947, 1063, 1193
AsuHPI GGTGA 2 cut(s) 630, 1109
AvaII GGWCC 3 cut(s) 879, 947, 1193
AxyI CCTNAGG 1 cut(s) 1206
BaeI ACNNNNGTAYC 2 cut(s) 753, 786
BamHI GGATCC 1 cut(s) 230
BanI GGYRCC 2 cut(s) 128, 733
BanII GRGCYC 1 cut(s) 164
BarI GAAGNNNNNNTAC 2 cut(s) 1094, 1126
BauI CACGAG 1 cut(s) 692
BbsI GAAGAC 2 cut(s) 366, 1109
BbvI GCAGC 6 cut(s) 17, 547, 555, 880, 941, 1173
BccI CCATC 7 cut(s) 7, 11, 79, 360, 578, 899, 1165
BciT130I CCWGG 3 cut(s) 144, 1014, 1191
BclI TGATCA 1 cut(s) 97
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 3 cut(s) 224, 648, 666
BfmI CTRYAG 3 cut(s) 179, 246, 1111
BfoI RGCGCY 1 cut(s) 106
BfuAI ACCTGC 2 cut(s) 250, 931
BisI GCNGC 6 cut(s) 6, 561, 569, 894, 930, 1187
BlsI GCNGC 6 cut(s) 7, 562, 570, 895, 931, 1188
Bme1390I CCNGG 3 cut(s) 144, 1014, 1191
Bme18I GGWCC 3 cut(s) 879, 947, 1193
BmgT120I GGNCC 6 cut(s) 140, 787, 879, 947, 1063, 1193
BmiI GGNNCC 6 cut(s) 130, 232, 618, 735, 789, 948
BmrFI CCNGG 3 cut(s) 144, 1014, 1191
BmrI ACTGGG 1 cut(s) 537
BmsI GCATC 1 cut(s) 547
BmuI ACTGGG 1 cut(s) 537
BpiI GAAGAC 2 cut(s) 366, 1109
BpmI CTGGAG 3 cut(s) 554, 1035, 1265
Bpu10I CCTNAGC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 608, 638
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 758, 956
Bse1I ACTGG 4 cut(s) 325, 532, 925, 1196
Bse21I CCTNAGG 1 cut(s) 1206
BseBI CCWGG 3 cut(s) 144, 1014, 1191
BseDI CCNNGG 1 cut(s) 334
BseGI GGATG 2 cut(s) 22, 90
BseLI CCNNNNNNNGG 3 cut(s) 138, 758, 956
BseMII CTCAG 4 cut(s) 41, 395, 1136, 1220
BseNI ACTGG 4 cut(s) 325, 532, 925, 1196
BseRI GAGGAG 2 cut(s) 551, 1095
BseXI GCAGC 6 cut(s) 17, 547, 555, 880, 941, 1173
BsgI GTGCAG 2 cut(s) 632, 948
BshFI GGCC 3 cut(s) 142, 788, 1065
BshNI GGYRCC 2 cut(s) 128, 733
BsiSI CCGG 1 cut(s) 620
BslFI GGGAC 3 cut(s) 960, 1049, 1243
BslI CCNNNNNNNGG 3 cut(s) 138, 758, 956
BsmFI GGGAC 3 cut(s) 960, 1049, 1243
BsnI GGCC 3 cut(s) 142, 788, 1065
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 7 cut(s) 97, 230, 391, 706, 814, 832, 1201
Bsp19I CCATGG 1 cut(s) 334
BspACI CCGC 1 cut(s) 164
BspANI GGCC 3 cut(s) 142, 788, 1065
BspCNI CTCAG 4 cut(s) 40, 394, 1135, 1219
BspLI GGNNCC 6 cut(s) 130, 232, 618, 735, 789, 948
BspMAI CTGCAG 2 cut(s) 183, 250
BspMI ACCTGC 2 cut(s) 250, 931
BspPI GGATC 6 cut(s) 225, 238, 701, 809, 827, 1196
BspT107I GGYRCC 2 cut(s) 128, 733
BsrI ACTGG 4 cut(s) 325, 532, 925, 1196
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 7 cut(s) 97, 230, 391, 706, 814, 832, 1201
BssSI CACGAG 1 cut(s) 692
BssT1I CCWWGG 1 cut(s) 334
Bst2BI CACGAG 1 cut(s) 692
Bst2UI CCWGG 3 cut(s) 144, 1014, 1191
Bst4CI ACNGT 3 cut(s) 426, 761, 1108
Bst6I CTCTTC 3 cut(s) 864, 1014, 1018
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 5 cut(s) 27, 347, 381, 1122, 1206
BstDSI CCRYGG 1 cut(s) 334
BstEII GGTNACC 1 cut(s) 338
BstF5I GGATG 2 cut(s) 22, 90
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 7 cut(s) 100, 233, 394, 709, 817, 835, 1204
BstMBI GATC 7 cut(s) 97, 230, 391, 706, 814, 832, 1201
BstMWI GCNNNNNNNGC 1 cut(s) 529
BstNI CCWGG 3 cut(s) 144, 1014, 1191
BstNSI RCATGY 2 cut(s) 722, 728
BstPI GGTNACC 1 cut(s) 338
BstSCI CCNGG 3 cut(s) 142, 1012, 1189
BstSFI CTRYAG 3 cut(s) 179, 246, 1111
BstV1I GCAGC 6 cut(s) 17, 547, 555, 880, 941, 1173
BstV2I GAAGAC 2 cut(s) 366, 1109
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
Bsu36I CCTNAGG 1 cut(s) 1206
BsuRI GGCC 3 cut(s) 142, 788, 1065
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 2 cut(s) 22, 90
BtsI GCAGTG 1 cut(s) 931
BtsIMutI CAGTG 1 cut(s) 931
BveI ACCTGC 2 cut(s) 250, 931
Cac8I GCNNGC 1 cut(s) 164
CaiI CAGNNNCTG 1 cut(s) 1150
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 6 cut(s) 140, 787, 879, 947, 1063, 1193
Csp6I GTAC 4 cut(s) 115, 129, 265, 762
CviAII CATG 3 cut(s) 335, 719, 725
CviQI GTAC 4 cut(s) 115, 129, 265, 762
DdeI CTNAG 5 cut(s) 27, 347, 381, 1122, 1206
DpnI GATC 7 cut(s) 99, 232, 393, 708, 816, 834, 1203
DpnII GATC 7 cut(s) 97, 230, 391, 706, 814, 832, 1201
Eam1104I CTCTTC 3 cut(s) 864, 1014, 1018
EarI CTCTTC 3 cut(s) 864, 1014, 1018
Eco130I CCWWGG 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 164
Eco47I GGWCC 3 cut(s) 879, 947, 1193
Eco47III AGCGCT 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 1024
Eco81I CCTNAGG 1 cut(s) 1206
Eco91I GGTNACC 1 cut(s) 338
EcoO65I GGTNACC 1 cut(s) 338
EcoRI GAATTC 1 cut(s) 1239
EcoRII CCWGG 3 cut(s) 142, 1012, 1189
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 3 cut(s) 338, 722, 728
FaqI GGGAC 3 cut(s) 960, 1049, 1243
FatI CATG 3 cut(s) 334, 718, 724
FauI CCCGC 1 cut(s) 171
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 1 cut(s) 1110
Fnu4HI GCNGC 6 cut(s) 6, 561, 569, 894, 930, 1187
FokI GGATG 2 cut(s) 29, 97
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 6 cut(s) 6, 561, 569, 894, 930, 1187
FspBI CTAG 3 cut(s) 224, 648, 666
GlaI GCGC 1 cut(s) 104
GluI GCNGC 6 cut(s) 6, 561, 569, 894, 930, 1187
GsuI CTGGAG 3 cut(s) 554, 1035, 1265
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 3 cut(s) 142, 788, 1065
HapII CCGG 1 cut(s) 620
HhaI GCGC 1 cut(s) 105
Hin1II CATG 3 cut(s) 338, 722, 728
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 7 cut(s) 62, 623, 635, 698, 809, 986, 1147
HpaII CCGG 1 cut(s) 620
HphI GGTGA 2 cut(s) 630, 1109
Hpy166II GTNNAC 2 cut(s) 265, 1111
Hpy188I TCNGA 4 cut(s) 282, 714, 814, 1125
Hpy188III TCNNGA 6 cut(s) 356, 389, 548, 581, 1208, 1244
Hpy8I GTNNAC 2 cut(s) 265, 1111
HpyAV CCTTC 3 cut(s) 277, 820, 864
HpyCH4III ACNGT 3 cut(s) 426, 761, 1108
HpyCH4V TGCA 7 cut(s) 181, 248, 563, 571, 613, 724, 929
HpyF10VI GCNNNNNNNGC 1 cut(s) 529
HpyF3I CTNAG 5 cut(s) 27, 347, 381, 1122, 1206
Hsp92II CATG 3 cut(s) 338, 722, 728
HspAI GCGC 1 cut(s) 103
KpnI GGTACC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 7 cut(s) 97, 230, 391, 706, 814, 832, 1201
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 6 cut(s) 17, 547, 555, 880, 941, 1173
LweI GCATC 1 cut(s) 547
MaeI CTAG 3 cut(s) 224, 648, 666
MaeIII GTNAC 5 cut(s) 49, 338, 431, 636, 1084
MalI GATC 7 cut(s) 99, 232, 393, 708, 816, 834, 1203
MboI GATC 7 cut(s) 97, 230, 391, 706, 814, 832, 1201
MboII GAAGA 9 cut(s) 269, 322, 371, 536, 842, 851, 1001, 1035, 1114
MflI RGATCY 1 cut(s) 230
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 4 cut(s) 43, 308, 1222, 1239
MlyI GAGTC 3 cut(s) 632, 644, 803
MmeI TCCRAC 1 cut(s) 887
MroXI GAANNNNTTC 1 cut(s) 592
MseI TTAA 8 cut(s) 150, 216, 306, 468, 492, 516, 917, 1285
MslI CAYNNNNRTG 1 cut(s) 723
MspA1I CMGCKG 2 cut(s) 1044, 1186
MspI CCGG 1 cut(s) 620
MspR9I CCNGG 3 cut(s) 144, 1014, 1191
MvaI CCWGG 3 cut(s) 144, 1014, 1191
MwoI GCNNNNNNNGC 1 cut(s) 529
NcoI CCATGG 1 cut(s) 334
NdeII GATC 7 cut(s) 97, 230, 391, 706, 814, 832, 1201
NlaIII CATG 3 cut(s) 338, 722, 728
NlaIV GGNNCC 6 cut(s) 130, 232, 618, 735, 789, 948
NmeAIII GCCGAG 2 cut(s) 217, 1091
NmuCI GTSAC 3 cut(s) 49, 636, 1084
NspI RCATGY 2 cut(s) 722, 728
PaqCI CACCTGC 2 cut(s) 250, 931
PciI ACATGT 1 cut(s) 718
PdmI GAANNNNTTC 1 cut(s) 592
PfeI GAWTC 4 cut(s) 62, 698, 986, 1147
PfoI TCCNGGA 1 cut(s) 1012
PkrI GCNGC 6 cut(s) 7, 562, 570, 895, 931, 1188
PleI GAGTC 3 cut(s) 631, 643, 803
PpsI GAGTC 3 cut(s) 631, 643, 803
PscI ACATGT 1 cut(s) 718
PshBI ATTAAT 1 cut(s) 468
Psp6I CCWGG 3 cut(s) 142, 1012, 1189
PspEI GGTNACC 1 cut(s) 338
PspGI CCWGG 3 cut(s) 142, 1012, 1189
PspN4I GGNNCC 6 cut(s) 130, 232, 618, 735, 789, 948
PspPI GGNCC 6 cut(s) 140, 787, 879, 947, 1063, 1193
PstI CTGCAG 2 cut(s) 183, 250
PstNI CAGNNNCTG 1 cut(s) 1150
PsuI RGATCY 1 cut(s) 230
PvuII CAGCTG 2 cut(s) 1044, 1186
RsaI GTAC 4 cut(s) 116, 130, 266, 763
RsaNI GTAC 4 cut(s) 115, 129, 265, 762
RseI CAYNNNNRTG 1 cut(s) 723
SaqAI TTAA 8 cut(s) 150, 216, 306, 468, 492, 516, 917, 1285
SatI GCNGC 6 cut(s) 6, 561, 569, 894, 930, 1187
Sau3AI GATC 7 cut(s) 97, 230, 391, 706, 814, 832, 1201
Sau96I GGNCC 6 cut(s) 140, 787, 879, 947, 1063, 1193
SchI GAGTC 3 cut(s) 632, 644, 803
ScrFI CCNGG 3 cut(s) 144, 1014, 1191
SduI GDGCHC 1 cut(s) 164
SfaNI GCATC 1 cut(s) 547
SfcI CTRYAG 3 cut(s) 179, 246, 1111
SinI GGWCC 3 cut(s) 879, 947, 1193
SmiMI CAYNNNNRTG 1 cut(s) 723
SpeI ACTAGT 1 cut(s) 647
Sse9I AATT 4 cut(s) 43, 308, 1222, 1239
SsiI CCGC 1 cut(s) 164
SspI AATATT 1 cut(s) 886
SspMI CTAG 3 cut(s) 224, 648, 666
StyD4I CCNGG 3 cut(s) 142, 1012, 1189
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 3 cut(s) 426, 761, 1108
TaqI TCGA 4 cut(s) 75, 355, 701, 831
TasI AATT 4 cut(s) 43, 308, 1222, 1239
TatI WGTACW 2 cut(s) 114, 264
TfiI GAWTC 4 cut(s) 62, 698, 986, 1147
Tru1I TTAA 8 cut(s) 150, 216, 306, 468, 492, 516, 917, 1285
Tru9I TTAA 8 cut(s) 150, 216, 306, 468, 492, 516, 917, 1285
TscAI CASTG 1 cut(s) 931
TseFI GTSAC 3 cut(s) 49, 636, 1084
TseI GCWGC 6 cut(s) 5, 560, 568, 893, 929, 1186
Tsp45I GTSAC 3 cut(s) 49, 636, 1084
TspDTI ATGAA 5 cut(s) 109, 585, 978, 1044, 1274
TspGWI ACGGA 1 cut(s) 1251
TspRI CASTG 1 cut(s) 931
VpaK11BI GGWCC 3 cut(s) 879, 947, 1193
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 1 cut(s) 1239
XceI RCATGY 2 cut(s) 722, 728
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 1110
XmnI GAANNNNTTC 1 cut(s) 592
XspI CTAG 3 cut(s) 224, 648, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.