Rorug03G0206700

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002492
Physical Location & Seq
Forward (+)
18310776 .. 18312801
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0206700.1

Sequence Viewer

Length: 399 bp
ATGGCGCTGCTTAGAAGAGCGGTGAGGTCGGGCCCTAGTTTATCATCTTCCTCTCTTATTCCTCCGGCGATTCTAATCTCTTGCCGGGCACTAACTACTAAGCTCTTCGTCGGTGGACTATCATTTTACACTACGGAAAAGGGATTACAAGAAGCATTCTCTCAATATGGTCAAGTGGTTGAAGCTCAAGTAGTATCAGACAGAGTGTCGGACCGATCAAAAGGATTTGGATTTGTTACCTTTGCTTCACAAGATGAAGCCCACAAAGCCGTAGAGGAGATGAATGGAAAGGCGCTGAATGGGCGTGTTATATTTGTGGACTATGCAAAGCCCAAATCAGATTATGGTGGTGGTGTGCCAATTGCAAGAGGACCTCCAGAAGTGAAAATTGATGGCTGA

Protein Analysis

132

Amino Acids

14.1

Weight (kDa)

9.13

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 35 - 104 6.3e-24 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 1 cut(s) 20
AgsI TTSAA 1 cut(s) 182
AhdI GACNNNNNGTC 1 cut(s) 205
AluBI AGCT 2 cut(s) 103, 185
AluI AGCT 2 cut(s) 103, 185
AoxI GGCC 1 cut(s) 31
ApaI GGGCCC 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 7
AspLEI GCGC 2 cut(s) 7, 295
AspS9I GGNCC 4 cut(s) 31, 32, 211, 371
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 34
AvaII GGWCC 2 cut(s) 211, 371
BaeGI GKGCMC 2 cut(s) 35, 91
BanII GRGCYC 1 cut(s) 35
BccI CCATC 1 cut(s) 386
BceAI ACGGC 1 cut(s) 254
BcnI CCSGG 1 cut(s) 86
BfaI CTAG 1 cut(s) 36
BfoI RGCGCY 2 cut(s) 8, 296
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 2 cut(s) 211, 371
BmeRI GACNNNNNGTC 1 cut(s) 205
BmgT120I GGNCC 4 cut(s) 31, 32, 211, 371
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 74
Bse8I GATNNNNATC 1 cut(s) 74
BseJI GATNNNNATC 1 cut(s) 74
BseRI GAGGAG 1 cut(s) 290
BseSI GKGCMC 2 cut(s) 35, 91
BshFI GGCC 1 cut(s) 33
BsiSI CCGG 2 cut(s) 65, 85
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 1 cut(s) 33
Bsp120I GGGCCC 1 cut(s) 31
Bsp1286I GDGCHC 2 cut(s) 35, 91
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 33
BspQI GCTCTTC 2 cut(s) 10, 110
BsrBI CCGCTC 1 cut(s) 20
BssMI GATC 1 cut(s) 215
Bst6I CTCTTC 2 cut(s) 10, 110
BstDEI CTNAG 2 cut(s) 11, 99
BstH2I RGCGCY 2 cut(s) 8, 296
BstHHI GCGC 2 cut(s) 7, 295
BstKTI GATC 1 cut(s) 218
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 2 cut(s) 266, 301
BstSCI CCNGG 1 cut(s) 84
BstSLI GKGCMC 2 cut(s) 35, 91
BsuRI GGCC 1 cut(s) 33
CfoI GCGC 2 cut(s) 7, 295
Cfr13I GGNCC 4 cut(s) 31, 32, 211, 371
CpoI CGGWCCG 1 cut(s) 211
CspI CGGWCCG 1 cut(s) 211
CviJI RGCY 7 cut(s) 33, 103, 185, 260, 269, 331, 396
CviKI_1 RGCY 7 cut(s) 33, 103, 185, 260, 269, 331, 396
DdeI CTNAG 2 cut(s) 11, 99
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
DriI GACNNNNNGTC 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 10, 110
Eam1105I GACNNNNNGTC 1 cut(s) 205
EarI CTCTTC 2 cut(s) 10, 110
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 2 cut(s) 211, 371
EcoO109I RGGNCCY 2 cut(s) 32, 371
EcoT38I GRGCYC 1 cut(s) 35
FaiI YATR 4 cut(s) 168, 311, 324, 345
Fnu4HI GCNGC 1 cut(s) 8
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 8
FspBI CTAG 1 cut(s) 36
GlaI GCGC 2 cut(s) 6, 294
GluI GCNGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 360
HaeII RGCGCY 2 cut(s) 8, 296
HaeIII GGCC 1 cut(s) 33
HapII CCGG 2 cut(s) 65, 85
HhaI GCGC 2 cut(s) 7, 295
Hin6I GCGC 2 cut(s) 5, 293
HinP1I GCGC 2 cut(s) 5, 293
HinfI GANTC 1 cut(s) 70
HpaII CCGG 2 cut(s) 65, 85
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 116, 319
Hpy188I TCNGA 3 cut(s) 199, 211, 340
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 2 cut(s) 116, 319
Hpy99I CGWCG 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 326, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 301
HpyF3I CTNAG 2 cut(s) 11, 99
HspAI GCGC 2 cut(s) 5, 293
Kzo9I GATC 1 cut(s) 215
LguI GCTCTTC 2 cut(s) 10, 110
LpnPI CCDG 3 cut(s) 78, 98, 390
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 217
MbiI CCGCTC 1 cut(s) 20
MboI GATC 1 cut(s) 215
MboII GAAGA 3 cut(s) 27, 39, 97
MfeI CAATTG 1 cut(s) 360
MhlI GDGCHC 2 cut(s) 35, 91
MluCI AATT 2 cut(s) 360, 387
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 6 cut(s) 18, 61, 72, 268, 362, 384
MspI CCGG 2 cut(s) 65, 85
MspR9I CCNGG 1 cut(s) 86
MunI CAATTG 1 cut(s) 360
Mva1269I GAATGC 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 266, 301
NciI CCSGG 1 cut(s) 86
NdeII GATC 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 33
PciSI GCTCTTC 2 cut(s) 10, 110
PctI GAATGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 9
PpuMI RGGWCCY 1 cut(s) 371
Psp5II RGGWCCY 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 33
PspOMI GGGCCC 1 cut(s) 31
PspPI GGNCC 4 cut(s) 31, 32, 211, 371
PspPPI RGGWCCY 1 cut(s) 371
Rsr2I CGGWCCG 1 cut(s) 211
RsrII CGGWCCG 1 cut(s) 211
SapI GCTCTTC 2 cut(s) 10, 110
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 1 cut(s) 215
Sau96I GGNCC 4 cut(s) 31, 32, 211, 371
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 2 cut(s) 35, 91
SetI ASST 5 cut(s) 29, 105, 187, 242, 376
SinI GGWCC 2 cut(s) 211, 371
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 2 cut(s) 360, 387
SsiI CCGC 1 cut(s) 20
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 84
TaqII GACCGA 1 cut(s) 228
TasI AATT 2 cut(s) 360, 387
TfiI GAWTC 1 cut(s) 70
TseI GCWGC 1 cut(s) 7
TspDTI ATGAA 2 cut(s) 270, 296
TspGWI ACGGA 1 cut(s) 149
VpaK11BI GGWCC 2 cut(s) 211, 371
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.