Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Reverse (-)

18578417 .. 18580972

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24480.t9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCAAATGATGATCAGATGTTTCTCTTGTACTTCATAATGGGTACCTACTTTGGCCCTGATGTTAAAGGAGAAAGGCCTCCTAAGTCAGTCTTGCAGAGAATAGCCGAGGGACTTCCACCATATACTTTTGAACAACTAGATGGGTCCCAAATCACTACAGCAGAGGTACAGCAAGTATACTATTATGTTCTTAGGAAGGCTGATCAATCTGCCATTGTTCAGTTACCTTTGTTGCACCAGTTCTTCCATGGTAATCTCTTCATCCAAGGACAAGAAGACACAGCCAATTACCCTCAGTTTCCTGATCTCTTTCCTCCCCTACTTCACTACAATTCGCAGTCAAGAACCAGATTCAACTTCTTTGAGAACATTGTATTTATCAGAAATCCGGAAATATCTTACATTAAGCCAGGAGACTTAGAAAGATTTAAGAGGCTAACTGGGCTGAAAGATCTTTTTCTGGATAGAGATTCTGAGAGGTTGCATGCCAATACTGATGGATGTGTTTCTTATGATACGACAGTCCATGAGCAGAAGTCTAATGGAGGATCACCTTCCATTAGATCTTCTCGAAGCTCTACTATAAAAAAACATGTAGATGATCTCCTAGAATGTAAGGATTCTCTGAAACAAGTGCATTTGGTGGCTCCTACCAGTAGCGTTGAATATAATGGTACACCTGTTATGTACAGTTATATGGCTCCTCTGCCAACGGGAAATGGCTCTGAAGATACGCAGAAAGTTGATCCTACTATGATTTTTCTTCCTTCTCCTCCAACTGAAAAGGAGTGGTCAGATATTGTAGCTGCAACCAAACATGGATTTGCATTGACTGGGAGTGCAGCAACAGGACAGATAGGACCAACTATAGGACTCATTGACATTGGAGAGTCTGAGGACTCCTACCTGTTTCGTGTATCGCTTCCCGGGGTGAGAAGAGATGAAAGACAGAATCTATGCACACATGCATGCATACTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

329

Amino Acids

36.88

Weight (kDa)

5.39

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	391
AclWI	GGATC	2 cut(s)	559, 743
AcuI	CTGAAG	1 cut(s)	750
AfaI	GTAC	5 cut(s)	32, 46, 171, 679, 692
AfiI	CCNNNNNNNGG	1 cut(s)	872
AflIII	ACRYGT	1 cut(s)	595
AgsI	TTSAA	3 cut(s)	134, 358, 668
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	2 cut(s)	579, 809
AluI	AGCT	2 cut(s)	579, 809
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	2 cut(s)	559, 743
Ama87I	CYCGRG	1 cut(s)	929
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	2 cut(s)	55, 77
ApeKI	GCWGC	2 cut(s)	809, 845
Asp718I	GGTACC	1 cut(s)	44
AspS9I	GGNCC	3 cut(s)	56, 147, 863
AsuC2I	CCSGG	2 cut(s)	930, 931
AsuHPI	GGTGA	2 cut(s)	546, 946
AvaI	CYCGRG	1 cut(s)	929
AvaII	GGWCC	2 cut(s)	147, 863
BaeI	ACNNNNGTAYC	4 cut(s)	510, 543, 669, 702
BanI	GGYRCC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	796, 857
BccI	CCATC	2 cut(s)	137, 494
BciT130I	CCWGG	1 cut(s)	414
BclI	TGATCA	2 cut(s)	13, 205
BcnI	CCSGG	2 cut(s)	930, 931
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	2 cut(s)	140, 611
BfmI	CTRYAG	2 cut(s)	159, 870
BglII	AGATCT	2 cut(s)	454, 566
BisI	GCNGC	2 cut(s)	810, 846
BlsI	GCNGC	2 cut(s)	811, 847
Bme1390I	CCNGG	3 cut(s)	414, 930, 931
Bme18I	GGWCC	2 cut(s)	147, 863
BmeT110I	CYCGRG	1 cut(s)	929
BmgT120I	GGNCC	3 cut(s)	56, 147, 863
BmiI	GGNNCC	5 cut(s)	46, 148, 149, 651, 705
BmrFI	CCNGG	3 cut(s)	414, 930, 931
BmrI	ACTGGG	2 cut(s)	453, 846
BmuI	ACTGGG	2 cut(s)	453, 846
BpiI	GAAGAC	1 cut(s)	285
BpuMI	CCSGG	2 cut(s)	930, 931
BsaJI	CCNNGG	5 cut(s)	108, 250, 268, 929, 930
BsaWI	WCCGGW	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	872
Bse1I	ACTGG	4 cut(s)	241, 448, 657, 841
BseAI	TCCGGA	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	5 cut(s)	108, 250, 268, 929, 930
BseGI	GGATG	2 cut(s)	264, 509
BseLI	CCNNNNNNNGG	1 cut(s)	872
BseMII	CTCAG	3 cut(s)	311, 468, 888
BseNI	ACTGG	4 cut(s)	241, 448, 657, 841
BseRI	GAGGAG	2 cut(s)	696, 765
BseXI	GCAGC	2 cut(s)	796, 857
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	2 cut(s)	57, 79
BshNI	GGYRCC	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	929
BsiSI	CCGG	2 cut(s)	392, 930
BslFI	GGGAC	2 cut(s)	126, 133
BslI	CCNNNNNNNGG	1 cut(s)	872
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	2 cut(s)	126, 133
BsnI	GGCC	2 cut(s)	57, 79
BsoBI	CYCGRG	1 cut(s)	929
Bsp13I	TCCGGA	1 cut(s)	391
Bsp1407I	TGTACA	1 cut(s)	690
Bsp143I	GATC	8 cut(s)	13, 205, 307, 454, 551, 566, 604, 748
Bsp19I	CCATGG	1 cut(s)	250
BspANI	GGCC	2 cut(s)	57, 79
BspCNI	CTCAG	3 cut(s)	310, 469, 889
BspEI	TCCGGA	1 cut(s)	391
BspLI	GGNNCC	5 cut(s)	46, 148, 149, 651, 705
BspPI	GGATC	2 cut(s)	559, 743
BspT107I	GGYRCC	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	690
BsrI	ACTGG	4 cut(s)	241, 448, 657, 841
BssECI	CCNNGG	5 cut(s)	108, 250, 268, 929, 930
BssMI	GATC	8 cut(s)	13, 205, 307, 454, 551, 566, 604, 748
BssNAI	GTATAC	1 cut(s)	181
BssT1I	CCWWGG	2 cut(s)	250, 268
Bst1107I	GTATAC	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	526, 695
Bst6I	CTCTTC	2 cut(s)	266, 934
BstAUI	TGTACA	1 cut(s)	690
BstC8I	GCNNGC	2 cut(s)	489, 973
BstDEI	CTNAG	6 cut(s)	84, 194, 297, 421, 477, 897
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	264, 509
BstKTI	GATC	8 cut(s)	16, 208, 310, 457, 554, 569, 607, 751
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	8 cut(s)	13, 205, 307, 454, 551, 566, 604, 748
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	4 cut(s)	491, 599, 971, 975
BstSCI	CCNGG	3 cut(s)	412, 928, 929
BstSFI	CTRYAG	2 cut(s)	159, 870
BstV1I	GCAGC	2 cut(s)	796, 857
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	2 cut(s)	454, 566
BstYI	RGATCY	2 cut(s)	454, 566
BstZ17I	GTATAC	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	57, 79
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	264, 509
Cac8I	GCNNGC	2 cut(s)	489, 973
Cfr13I	GGNCC	3 cut(s)	56, 147, 863
Cfr9I	CCCGGG	1 cut(s)	929
Csp6I	GTAC	5 cut(s)	31, 45, 170, 678, 691
CviAII	CATG	7 cut(s)	251, 488, 530, 596, 821, 968, 972
CviQI	GTAC	5 cut(s)	31, 45, 170, 678, 691
DdeI	CTNAG	6 cut(s)	84, 194, 297, 421, 477, 897
DpnI	GATC	8 cut(s)	15, 207, 309, 456, 553, 568, 606, 750
DpnII	GATC	8 cut(s)	13, 205, 307, 454, 551, 566, 604, 748
Eam1104I	CTCTTC	2 cut(s)	266, 934
EarI	CTCTTC	2 cut(s)	266, 934
Eco130I	CCWWGG	2 cut(s)	250, 268
Eco147I	AGGCCT	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	147, 863
Eco57I	CTGAAG	1 cut(s)	750
Eco88I	CYCGRG	1 cut(s)	929
EcoO109I	RGGNCCY	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	412
EcoT14I	CCWWGG	2 cut(s)	250, 268
EcoT22I	ATGCAT	2 cut(s)	973, 977
ErhI	CCWWGG	2 cut(s)	250, 268
FaeI	CATG	7 cut(s)	254, 491, 533, 599, 824, 971, 975
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	2 cut(s)	126, 133
FatI	CATG	7 cut(s)	250, 487, 529, 595, 820, 967, 971
FbaI	TGATCA	2 cut(s)	13, 205
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	810, 846
FokI	GGATG	2 cut(s)	251, 516
Fsp4HI	GCNGC	2 cut(s)	810, 846
FspBI	CTAG	2 cut(s)	140, 611
GluI	GCNGC	2 cut(s)	810, 846
HaeIII	GGCC	2 cut(s)	57, 79
HapII	CCGG	2 cut(s)	392, 930
Hin1II	CATG	7 cut(s)	254, 491, 533, 599, 824, 971, 975
HinfI	GANTC	7 cut(s)	354, 473, 623, 876, 893, 902, 955
HpaII	CCGG	2 cut(s)	392, 930
HphI	GGTGA	2 cut(s)	546, 946
Hpy166II	GTNNAC	2 cut(s)	181, 680
Hpy188I	TCNGA	7 cut(s)	18, 386, 478, 630, 730, 799, 898
Hpy188III	TCNNGA	5 cut(s)	305, 345, 392, 464, 573
Hpy8I	GTNNAC	2 cut(s)	181, 680
HpyAV	CCTTC	3 cut(s)	193, 567, 780
HpyCH4III	ACNGT	2 cut(s)	526, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpyF3I	CTNAG	6 cut(s)	84, 194, 297, 421, 477, 897
Hsp92II	CATG	7 cut(s)	254, 491, 533, 599, 824, 971, 975
KflI	GGGWCCC	1 cut(s)	147
Kpn2I	TCCGGA	1 cut(s)	391
KpnI	GGTACC	1 cut(s)	48
Ksp22I	TGATCA	2 cut(s)	13, 205
Kzo9I	GATC	8 cut(s)	13, 205, 307, 454, 551, 566, 604, 748
LmnI	GCTCC	2 cut(s)	655, 709
Lsp1109I	GCAGC	2 cut(s)	796, 857
MaeI	CTAG	2 cut(s)	140, 611
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	8 cut(s)	15, 207, 309, 456, 553, 568, 606, 750
MboI	GATC	8 cut(s)	13, 205, 307, 454, 551, 566, 604, 748
MboII	GAAGA	7 cut(s)	238, 253, 290, 561, 743, 758, 951
MflI	RGATCY	2 cut(s)	454, 566
MluCI	AATT	2 cut(s)	289, 334
MlyI	GAGTC	3 cut(s)	870, 896, 902
MmeI	TCCRAC	1 cut(s)	803
Mph1103I	ATGCAT	2 cut(s)	973, 977
MroI	TCCGGA	1 cut(s)	391
MseI	TTAA	3 cut(s)	66, 408, 432
MslI	CAYNNNNRTG	2 cut(s)	600, 970
MspI	CCGG	2 cut(s)	392, 930
MspR9I	CCNGG	3 cut(s)	414, 930, 931
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	445
NciI	CCSGG	2 cut(s)	930, 931
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	8 cut(s)	13, 205, 307, 454, 551, 566, 604, 748
NlaIII	CATG	7 cut(s)	254, 491, 533, 599, 824, 971, 975
NlaIV	GGNNCC	5 cut(s)	46, 148, 149, 651, 705
NmeAIII	GCCGAG	1 cut(s)	133
NsiI	ATGCAT	2 cut(s)	973, 977
NspI	RCATGY	4 cut(s)	491, 599, 971, 975
PaeI	GCATGC	2 cut(s)	491, 975
PceI	AGGCCT	1 cut(s)	79
PciI	ACATGT	1 cut(s)	595
PfeI	GAWTC	4 cut(s)	354, 473, 623, 955
PkrI	GCNGC	2 cut(s)	811, 847
PleI	GAGTC	3 cut(s)	870, 896, 901
PpsI	GAGTC	3 cut(s)	870, 896, 901
PpuMI	RGGWCCY	1 cut(s)	147
PscI	ACATGT	1 cut(s)	595
Psp5II	RGGWCCY	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	5 cut(s)	46, 148, 149, 651, 705
PspPI	GGNCC	3 cut(s)	56, 147, 863
PspPPI	RGGWCCY	1 cut(s)	147
PsuI	RGATCY	2 cut(s)	454, 566
RsaI	GTAC	5 cut(s)	32, 46, 171, 679, 692
RsaNI	GTAC	5 cut(s)	31, 45, 170, 678, 691
RseI	CAYNNNNRTG	2 cut(s)	600, 970
SaqAI	TTAA	3 cut(s)	66, 408, 432
SatI	GCNGC	2 cut(s)	810, 846
Sau3AI	GATC	8 cut(s)	13, 205, 307, 454, 551, 566, 604, 748
Sau96I	GGNCC	3 cut(s)	56, 147, 863
SchI	GAGTC	3 cut(s)	870, 896, 902
ScrFI	CCNGG	3 cut(s)	414, 930, 931
SetI	ASST	9 cut(s)	50, 171, 232, 485, 559, 581, 685, 811, 912
SfcI	CTRYAG	2 cut(s)	159, 870
SinI	GGWCC	2 cut(s)	147, 863
SmaI	CCCGGG	1 cut(s)	931
SmiMI	CAYNNNNRTG	2 cut(s)	600, 970
SphI	GCATGC	2 cut(s)	491, 975
Sse9I	AATT	2 cut(s)	289, 334
SseBI	AGGCCT	1 cut(s)	79
SspMI	CTAG	2 cut(s)	140, 611
StuI	AGGCCT	1 cut(s)	79
StyD4I	CCNGG	3 cut(s)	412, 928, 929
StyI	CCWWGG	2 cut(s)	250, 268
TaaI	ACNGT	2 cut(s)	526, 695
TaqI	TCGA	1 cut(s)	574
TasI	AATT	2 cut(s)	289, 334
TatI	WGTACW	2 cut(s)	30, 690
TfiI	GAWTC	4 cut(s)	354, 473, 623, 955
Tru1I	TTAA	3 cut(s)	66, 408, 432
Tru9I	TTAA	3 cut(s)	66, 408, 432
TseI	GCWGC	2 cut(s)	809, 845
TspDTI	ATGAA	3 cut(s)	25, 253, 960
TspMI	CCCGGG	1 cut(s)	929
VpaK11BI	GGWCC	2 cut(s)	147, 863
XceI	RCATGY	4 cut(s)	491, 599, 971, 975
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XmaI	CCCGGG	1 cut(s)	929
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	2 cut(s)	140, 611
Zsp2I	ATGCAT	2 cut(s)	973, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.