Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Reverse (-)

10005984 .. 10008482

Gene Structure 2499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1082200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGATGGCTTGTCTCAGGCGACAGGATCTAATCCTGCCATAGGGTTAGATTTTAACAATTTTCAAAGTGGGGTGGCAAATGATGATCAGCGCTTTCTCTTGTACTTCATTATCGGTACCTACTTTGGGCCTGATCTTAAAGGAGAGAGGCCATCAAAGTCAGTGTTGCAGAGAATAGCTGAGCGACTTCCACCATATACTATTGAGCAACTAGGTGGCTCCCGCCTGAAAATGGCAGAGGTAGGGCAGGTGTACTATTATGTTCTTCGGAAGGCTGACCAATCTGCCATTGTTAAATTACCTTTGTTAAGCCAGTTCTTCCATGGTAGCCTCCGTACCCGTAGAGAAGATGCCACAGCCAATTACCCTCAGTTTATGGATCTCTTTCCTCTTCTACTCCACCCCCATTCACAGTTCAATAACAAAGATGATATCTTTGAGAACATTGTATTTATTCATAACCCAGAAATATATTACATTAAGCCAAAGGATATCGAACGATTTAAGAGGCTTACTGGGCTGGAGGATTTTCTTCTGGATAGAGATGCTGCAAGGCTGCATACTGTTCCTGATGGAAGTGTTTTACATAATGTGTTGGAGCAGGAGCTGAAGTCCAATGGTGAGTCACCTCCTGCTAGTTCTTGTCAAAGTTCTAGGGGAACGAAACATTTAGAGGATCTCATGGAATTGAAGGATCCTCTGAAACCTATGCATGTTGAAGCACCTATCAGTACTGTTCCAGATTGTGGTACTCCTATGATGCATAGTTATATGTCCCCGCACACGAATAAAACAACCTCTGAGCCTGTGGAGAAACTTGATCGTGCTATGATTTTTCTTCCTTCTCTTCCAACTAAAAAAGAGTTGTCCAATATTGTAGCTGCCACCAGAGATGGATTTGCATTGACTGGGAGTGCGGCAATGGCGAAGGTGGGACCAACGATAGGGCTCATTGACATTGGAGAATGTGATGACTCCTACCTGTTTCGTGTATCTCTTCCTGGAGTGAGAAGAGATGAAAGGGAATTCAGCTGTGAAGTTGAAAATGAGGGCCAAGTATTGATAAGAGGAGTGACGGTAACAGGCGAGAAGACAGTCCACAGGTACTCTCAGATGTTTGAAATGCAAACACAGAATCTTTGCCCTTCTGGGCAGTTTTCCATCTCGTTTCAGCTACCTGGTCCAGTTAATCCGCAGCAGTTTTCTGGTAATTTTGGGACGGATGGAATTCTGGAGGGAATTGTGATGAAACGAAAAGATGACAGTAGTAAGTATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

427

Amino Acids

47.65

Weight (kDa)

5.72

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	238
Acc65I	GGTACC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	746
AciI	CCGC	4 cut(s)	223, 779, 917, 1193
AclWI	GGATC	5 cut(s)	34, 387, 684, 689, 702
AcsI	RAATTY	2 cut(s)	1025, 1227
AcuI	CTGAAG	1 cut(s)	629
AfaI	GTAC	7 cut(s)	104, 118, 254, 337, 733, 751, 1106
AfeI	AGCGCT	1 cut(s)	92
AfiI	CCNNNNNNNGG	5 cut(s)	41, 126, 232, 746, 944
AgsI	TTSAA	6 cut(s)	65, 418, 691, 719, 1043, 1121
AjnI	CCWGG	2 cut(s)	1000, 1177
AluBI	AGCT	5 cut(s)	179, 607, 881, 1032, 1174
AluI	AGCT	5 cut(s)	179, 607, 881, 1032, 1174
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	5 cut(s)	34, 387, 684, 689, 702
AlwNI	CAGNNNCTG	1 cut(s)	607
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	3 cut(s)	128, 149, 1051
ApeKI	GCWGC	4 cut(s)	548, 556, 881, 1195
ApoI	RAATTY	2 cut(s)	1025, 1227
Asp718I	GGTACC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	4 cut(s)	128, 935, 1051, 1181
AsuHPI	GGTGA	2 cut(s)	618, 632
AvaII	GGWCC	2 cut(s)	935, 1181
BamHI	GGATCC	1 cut(s)	694
BanI	GGYRCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	951
BbsI	GAAGAC	1 cut(s)	1097
BbvI	GCAGC	4 cut(s)	535, 543, 868, 1207
BccI	CCATC	5 cut(s)	160, 566, 887, 1169, 1217
BciT130I	CCWGG	2 cut(s)	1002, 1179
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	3 cut(s)	212, 636, 654
BfoI	RGCGCY	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	238
BisI	GCNGC	5 cut(s)	549, 557, 882, 918, 1196
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	5 cut(s)	550, 558, 883, 919, 1197
BmcAI	AGTACT	1 cut(s)	733
Bme1390I	CCNGG	2 cut(s)	1002, 1179
Bme18I	GGWCC	2 cut(s)	935, 1181
BmgT120I	GGNCC	4 cut(s)	128, 935, 1051, 1181
BmiI	GGNNCC	4 cut(s)	118, 220, 696, 936
BmrFI	CCNGG	2 cut(s)	1002, 1179
BmrI	ACTGGG	2 cut(s)	525, 918
BmsI	GCATC	3 cut(s)	340, 535, 750
BmuI	ACTGGG	2 cut(s)	525, 918
BpiI	GAAGAC	1 cut(s)	1097
BpmI	CTGGAG	3 cut(s)	542, 1023, 1253
Bpu1102I	GCTNAGC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	322
BsaXI	ACNNNNNCTCC	4 cut(s)	596, 626, 1062, 1092
Bsc4I	CCNNNNNNNGG	5 cut(s)	41, 126, 232, 746, 944
Bse1I	ACTGG	4 cut(s)	313, 520, 913, 1184
Bse3DI	GCAATG	1 cut(s)	927
BseBI	CCWGG	2 cut(s)	1002, 1179
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	10, 1228
BseLI	CCNNNNNNNGG	5 cut(s)	41, 126, 232, 746, 944
BseMI	GCAATG	1 cut(s)	927
BseMII	CTCAG	5 cut(s)	29, 171, 383, 792, 1124
BseNI	ACTGG	4 cut(s)	313, 520, 913, 1184
BseRI	GAGGAG	1 cut(s)	1083
BseXI	GCAGC	4 cut(s)	535, 543, 868, 1207
BshFI	GGCC	3 cut(s)	130, 151, 1053
BshNI	GGYRCC	1 cut(s)	116
BslFI	GGGAC	3 cut(s)	760, 948, 1231
BslI	CCNNNNNNNGG	5 cut(s)	41, 126, 232, 746, 944
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	3 cut(s)	760, 948, 1231
BsnI	GGCC	3 cut(s)	130, 151, 1053
Bsp1286I	GDGCHC	1 cut(s)	951
Bsp143I	GATC	7 cut(s)	26, 85, 133, 379, 676, 694, 820
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	4 cut(s)	223, 779, 917, 1193
BspANI	GGCC	3 cut(s)	130, 151, 1053
BspCNI	CTCAG	5 cut(s)	28, 172, 382, 793, 1123
BspLI	GGNNCC	4 cut(s)	118, 220, 696, 936
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	5 cut(s)	34, 387, 684, 689, 702
BspT107I	GGYRCC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	927
BsrI	ACTGG	4 cut(s)	313, 520, 913, 1184
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	7 cut(s)	26, 85, 133, 379, 676, 694, 820
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	2 cut(s)	1002, 1179
Bst4CI	ACNGT	6 cut(s)	414, 565, 736, 1078, 1096, 1265
Bst6I	CTCTTC	4 cut(s)	396, 852, 1002, 1006
BstDEI	CTNAG	5 cut(s)	15, 180, 369, 801, 1110
BstDSI	CCRYGG	1 cut(s)	322
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	10, 1228
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	7 cut(s)	29, 88, 136, 382, 679, 697, 823
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	7 cut(s)	26, 85, 133, 379, 676, 694, 820
BstMWI	GCNNNNNNNGC	2 cut(s)	517, 923
BstNI	CCWGG	2 cut(s)	1002, 1179
BstNSI	RCATGY	1 cut(s)	716
BstSCI	CCNGG	2 cut(s)	1000, 1177
BstV1I	GCAGC	4 cut(s)	535, 543, 868, 1207
BstV2I	GAAGAC	1 cut(s)	1097
BstX2I	RGATCY	4 cut(s)	26, 379, 676, 694
BstYI	RGATCY	4 cut(s)	26, 379, 676, 694
BsuRI	GGCC	3 cut(s)	130, 151, 1053
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	10, 1228
BtsIMutI	CAGTG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	238
CaiI	CAGNNNCTG	1 cut(s)	607
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	4 cut(s)	128, 935, 1051, 1181
CsiI	ACCWGGT	1 cut(s)	1177
Csp6I	GTAC	7 cut(s)	103, 117, 253, 336, 732, 750, 1105
CviAII	CATG	3 cut(s)	323, 682, 713
CviQI	GTAC	7 cut(s)	103, 117, 253, 336, 732, 750, 1105
DdeI	CTNAG	5 cut(s)	15, 180, 369, 801, 1110
DpnI	GATC	7 cut(s)	28, 87, 135, 381, 678, 696, 822
DpnII	GATC	7 cut(s)	26, 85, 133, 379, 676, 694, 820
Eam1104I	CTCTTC	4 cut(s)	396, 852, 1002, 1006
EarI	CTCTTC	4 cut(s)	396, 852, 1002, 1006
Eco130I	CCWWGG	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	951
Eco32I	GATATC	2 cut(s)	433, 493
Eco47I	GGWCC	2 cut(s)	935, 1181
Eco47III	AGCGCT	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	629
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoRI	GAATTC	2 cut(s)	1025, 1227
EcoRII	CCWGG	2 cut(s)	1000, 1177
EcoRV	GATATC	2 cut(s)	433, 493
EcoT14I	CCWWGG	1 cut(s)	322
EcoT22I	ATGCAT	2 cut(s)	714, 765
EcoT38I	GRGCYC	1 cut(s)	951
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	3 cut(s)	326, 685, 716
FaqI	GGGAC	3 cut(s)	760, 948, 1231
FatI	CATG	3 cut(s)	322, 681, 712
FauI	CCCGC	2 cut(s)	230, 786
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	5 cut(s)	549, 557, 882, 918, 1196
FokI	GGATG	2 cut(s)	17, 1235
FriOI	GRGCYC	1 cut(s)	951
Fsp4HI	GCNGC	5 cut(s)	549, 557, 882, 918, 1196
FspBI	CTAG	3 cut(s)	212, 636, 654
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	5 cut(s)	549, 557, 882, 918, 1196
GsuI	CTGGAG	3 cut(s)	542, 1023, 1253
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	3 cut(s)	130, 151, 1053
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	326, 685, 716
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	3 cut(s)	623, 974, 1135
HphI	GGTGA	2 cut(s)	618, 632
Hpy166II	GTNNAC	2 cut(s)	253, 1099
Hpy188I	TCNGA	4 cut(s)	270, 702, 802, 1113
Hpy188III	TCNNGA	4 cut(s)	536, 569, 740, 1232
Hpy8I	GTNNAC	2 cut(s)	253, 1099
HpyAV	CCTTC	5 cut(s)	265, 685, 852, 922, 1155
HpyCH4III	ACNGT	6 cut(s)	414, 565, 736, 1078, 1096, 1265
HpyCH4V	TGCA	7 cut(s)	169, 551, 559, 712, 763, 902, 1126
HpyF10VI	GCNNNNNNNGC	2 cut(s)	517, 923
HpyF3I	CTNAG	5 cut(s)	15, 180, 369, 801, 1110
Hsp92II	CATG	3 cut(s)	326, 685, 716
HspAI	GCGC	1 cut(s)	91
KpnI	GGTACC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	7 cut(s)	26, 85, 133, 379, 676, 694, 820
LmnI	GCTCC	3 cut(s)	224, 598, 604
Lsp1109I	GCAGC	4 cut(s)	535, 543, 868, 1207
LweI	GCATC	3 cut(s)	340, 535, 750
MabI	ACCWGGT	1 cut(s)	1177
MaeI	CTAG	3 cut(s)	212, 636, 654
MaeIII	GTNAC	3 cut(s)	624, 1072, 1078
MalI	GATC	7 cut(s)	28, 87, 135, 381, 678, 696, 822
MboI	GATC	7 cut(s)	26, 85, 133, 379, 676, 694, 820
MflI	RGATCY	4 cut(s)	26, 379, 676, 694
MhlI	GDGCHC	1 cut(s)	951
MluCI	AATT	8 cut(s)	58, 296, 361, 686, 1025, 1210, 1227, 1239
MlyI	GAGTC	2 cut(s)	632, 968
MmeI	TCCRAC	2 cut(s)	576, 875
Mph1103I	ATGCAT	2 cut(s)	714, 765
MseI	TTAA	7 cut(s)	54, 138, 294, 308, 480, 504, 1188
MspA1I	CMGCKG	1 cut(s)	1032
MspR9I	CCNGG	2 cut(s)	1002, 1179
MvaI	CCWGG	2 cut(s)	1002, 1179
MwoI	GCNNNNNNNGC	2 cut(s)	517, 923
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	7 cut(s)	26, 85, 133, 379, 676, 694, 820
NlaIII	CATG	3 cut(s)	326, 685, 716
NlaIV	GGNNCC	4 cut(s)	118, 220, 696, 936
NmuCI	GTSAC	2 cut(s)	624, 1072
NsiI	ATGCAT	2 cut(s)	714, 765
NspI	RCATGY	1 cut(s)	716
PaqCI	CACCTGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	1135
PflMI	CCANNNNNTGG	1 cut(s)	746
PfoI	TCCNGGA	1 cut(s)	1000
PkrI	GCNGC	5 cut(s)	550, 558, 883, 919, 1197
PleI	GAGTC	2 cut(s)	631, 968
PpsI	GAGTC	2 cut(s)	631, 968
Psp6I	CCWGG	2 cut(s)	1000, 1177
PspGI	CCWGG	2 cut(s)	1000, 1177
PspN4I	GGNNCC	4 cut(s)	118, 220, 696, 936
PspPI	GGNCC	4 cut(s)	128, 935, 1051, 1181
PstNI	CAGNNNCTG	1 cut(s)	607
PsuI	RGATCY	4 cut(s)	26, 379, 676, 694
PvuII	CAGCTG	1 cut(s)	1032
RsaI	GTAC	7 cut(s)	104, 118, 254, 337, 733, 751, 1106
RsaNI	GTAC	7 cut(s)	103, 117, 253, 336, 732, 750, 1105
SaqAI	TTAA	7 cut(s)	54, 138, 294, 308, 480, 504, 1188
SatI	GCNGC	5 cut(s)	549, 557, 882, 918, 1196
Sau3AI	GATC	7 cut(s)	26, 85, 133, 379, 676, 694, 820
Sau96I	GGNCC	4 cut(s)	128, 935, 1051, 1181
ScaI	AGTACT	1 cut(s)	733
SchI	GAGTC	2 cut(s)	632, 968
ScrFI	CCNGG	2 cut(s)	1002, 1179
SduI	GDGCHC	1 cut(s)	951
SexAI	ACCWGGT	1 cut(s)	1177
SfaNI	GCATC	3 cut(s)	340, 535, 750
SinI	GGWCC	2 cut(s)	935, 1181
Sse9I	AATT	8 cut(s)	58, 296, 361, 686, 1025, 1210, 1227, 1239
SsiI	CCGC	4 cut(s)	223, 779, 917, 1193
SspI	AATATT	1 cut(s)	874
SspMI	CTAG	3 cut(s)	212, 636, 654
StyD4I	CCNGG	2 cut(s)	1000, 1177
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	6 cut(s)	414, 565, 736, 1078, 1096, 1265
TaqI	TCGA	1 cut(s)	495
TasI	AATT	8 cut(s)	58, 296, 361, 686, 1025, 1210, 1227, 1239
TatI	WGTACW	3 cut(s)	102, 252, 731
TauI	GCSGC	1 cut(s)	920
TfiI	GAWTC	1 cut(s)	1135
Tru1I	TTAA	7 cut(s)	54, 138, 294, 308, 480, 504, 1188
Tru9I	TTAA	7 cut(s)	54, 138, 294, 308, 480, 504, 1188
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	2 cut(s)	624, 1072
TseI	GCWGC	4 cut(s)	548, 556, 881, 1195
Tsp45I	GTSAC	2 cut(s)	624, 1072
TspDTI	ATGAA	4 cut(s)	97, 446, 1032, 1262
TspGWI	ACGGA	2 cut(s)	323, 1235
TspRI	CASTG	1 cut(s)	168
Van91I	CCANNNNNTGG	1 cut(s)	746
VpaK11BI	GGWCC	2 cut(s)	935, 1181
XagI	CCTNNNNNAGG	1 cut(s)	39
XapI	RAATTY	2 cut(s)	1025, 1227
XceI	RCATGY	1 cut(s)	716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XspI	CTAG	3 cut(s)	212, 636, 654
ZrmI	AGTACT	1 cut(s)	733
Zsp2I	ATGCAT	2 cut(s)	714, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.