Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8172902.1

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 653

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8172902.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 265 bp

atgatttttcttccttctcctccaactgaaaaagagtggtcaaatattgtagctgcaaccaaaaatggatttgcattgactgggagtgcggcaacaggacagataggaccaactataggactcattgacattggagagtctgaggactcctacctgtttcgtgtatctcttcccggagtgagaagagatgaaagggaattcagctgtgaagttgaaaatgaaggacaagtattgataagaggggtgacaataacaggtgaaaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

88

Amino Acids

9.5

Weight (kDa)

4.58

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	215
AluBI	AGCT	2 cut(s)	53, 204
AluI	AGCT	2 cut(s)	53, 204
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	54, 90
BlsI	GCNGC	2 cut(s)	55, 91
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	174
BmrI	ACTGGG	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	116
BspACI	CCGC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	85
Bst6I	CTCTTC	2 cut(s)	174, 178
BstDEI	CTNAG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	107
CviJI	RGCY	2 cut(s)	53, 204
CviKI_1	RGCY	2 cut(s)	53, 204
DdeI	CTNAG	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	174, 178
EarI	CTCTTC	2 cut(s)	174, 178
Eco47I	GGWCC	1 cut(s)	107
EcoRI	GAATTC	1 cut(s)	197
FaiI	YATR	1 cut(s)	116
Fnu4HI	GCNGC	2 cut(s)	54, 90
Fsp4HI	GCNGC	2 cut(s)	54, 90
GluI	GCNGC	2 cut(s)	54, 90
HapII	CCGG	1 cut(s)	174
HinfI	GANTC	3 cut(s)	120, 137, 146
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	142
HpyAV	CCTTC	2 cut(s)	24, 215
HpyCH4V	TGCA	2 cut(s)	56, 74
HpyF3I	CTNAG	1 cut(s)	141
LpnPI	CCDG	5 cut(s)	66, 81, 167, 187, 240
Lsp1109I	GCAGC	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	244
MboII	GAAGA	2 cut(s)	161, 195
MluCI	AATT	1 cut(s)	197
MlyI	GAGTC	3 cut(s)	114, 140, 146
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	3 cut(s)	30, 136, 233
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	174
NciI	CCSGG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	244
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	55, 91
PleI	GAGTC	3 cut(s)	114, 140, 145
PpsI	GAGTC	3 cut(s)	114, 140, 145
PspPI	GGNCC	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	204
SatI	GCNGC	2 cut(s)	54, 90
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	3 cut(s)	114, 140, 146
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	4 cut(s)	55, 156, 206, 259
SfcI	CTRYAG	1 cut(s)	114
SgeI	CNNG	7 cut(s)	93, 108, 166, 173, 185, 186, 239
SinI	GGWCC	1 cut(s)	107
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	1 cut(s)	89
SspI	AATATT	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	172
TasI	AATT	1 cut(s)	197
TauI	GCSGC	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	204, 234
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.