Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Reverse (-)

29133185 .. 29136374

Gene Structure 3190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG285400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGATGACTCATCTCAGGCTACAGAGTCTAATCCTAAGAATGAGCAAAGCGGGGTGGCAAATGATGATCAGCTGTTTCTCTTGTACTTCATAATGGGTACCTACTTTGGCCCTGATGTTAAAGGAGACAGGCCCCCTAAGTCAGTGTTGCAGAGAATAGCTGAGGGACTTCCACCATATACTTTTGAGAAACTAGCTGGGTCCCAAATCAATACAGCAGAGGTGCAGCAGGTGTACTATTATGTTCTTAGGAAGGCTGATCAATCTGCTATTGTTAAATTACCTTTGTTGCACCAGTTCTTCCATGGTAACCTCCTCATGCAAGGACAAGATGACACAGCCAATTACCCTCAGTTTCCTGATCTCTTTCCTCCCGTACTTCACTACAATTCGCAGTCAAGAACTAGTTTTAACTTCTTTGAGAACATTGTACTTATCAGAAATCCGGAAATATATTACATTAAGCCAGAGGATATAGAAAGATTTAAGAGTCTAACTGGGCTTGAGGGTCTTGTTCTGGATAGAGATTCTGTGAGGTTGCATGCCAATACTGATGGAAGTACTTTATATGATATGCCAGTCCATGAGCAGAAGTCTAATGGAGAATCACCTCCCATTAGATCATCTCGAAGCTCTACTGTAACAAAACATGTAGATGATCCTCTAGAATATAAGGATCCTCTGAAACAAGTGCATGTGGTGGCACCTACCAGTAGTGTGGAATATAATGGTACACCTGTTATGTACAGTTATATGGCTCCTTTGCCGACGGGAAATGGCTCTGATGTTACACAGAATGTTGATCCTGCTATGATTTTTTTTCCTTCTCCTCCAACTGAAAACGAGTGGTCAAATATTGTAGCTGCAACCAAAAATGGATTTGCATTGACTGGGAGTGCGGCAACAGGGCAGATAGGACCAACTATAGGACTCATTGACATTGGAGAGTCTGAGGACTCCTACCTGTTTCGTGTATCTCTTCCTGGAGTGAGAAGAGATGAAATTAAGTTTCTCTATACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

341

Amino Acids

38.03

Weight (kDa)

4.86

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	220
Acc36I	ACCTGC	1 cut(s)	220
Acc65I	GGTACC	1 cut(s)	98
AccB1I	GGYRCC	2 cut(s)	98, 703
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	2 cut(s)	51, 899
AclWI	GGATC	4 cut(s)	653, 671, 684, 797
AfaI	GTAC	8 cut(s)	86, 100, 236, 378, 432, 562, 733, 746
AfiI	CCNNNNNNNGG	1 cut(s)	926
AflIII	ACRYGT	1 cut(s)	649
AhlI	ACTAGT	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	982
AluBI	AGCT	5 cut(s)	73, 161, 197, 633, 863
AluI	AGCT	5 cut(s)	73, 161, 197, 633, 863
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	4 cut(s)	653, 671, 684, 797
Aor13HI	TCCGGA	1 cut(s)	445
AoxI	GGCC	2 cut(s)	109, 131
ApeKI	GCWGC	2 cut(s)	226, 863
Asp718I	GGTACC	1 cut(s)	98
AspS9I	GGNCC	4 cut(s)	110, 132, 201, 917
AsuHPI	GGTGA	1 cut(s)	600
AvaII	GGWCC	2 cut(s)	201, 917
BaeI	ACNNNNGTAYC	2 cut(s)	723, 756
BamHI	GGATCC	1 cut(s)	676
BanI	GGYRCC	2 cut(s)	98, 703
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	238, 850
BccI	CCATC	1 cut(s)	548
BciT130I	CCWGG	1 cut(s)	984
BclI	TGATCA	2 cut(s)	67, 259
BcoDI	GTCTC	1 cut(s)	120
BcuI	ACTAGT	1 cut(s)	404
BfaI	CTAG	3 cut(s)	194, 405, 665
BfmI	CTRYAG	2 cut(s)	21, 924
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	3 cut(s)	227, 864, 900
BlsI	GCNGC	3 cut(s)	228, 865, 901
BmcAI	AGTACT	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	984
Bme18I	GGWCC	2 cut(s)	201, 917
BmgT120I	GGNCC	4 cut(s)	110, 132, 201, 917
BmiI	GGNNCC	7 cut(s)	100, 134, 202, 203, 678, 705, 759
BmrFI	CCNGG	1 cut(s)	984
BmrI	ACTGGG	2 cut(s)	507, 900
BmuI	ACTGGG	2 cut(s)	507, 900
BpmI	CTGGAG	1 cut(s)	1005
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	926
Bse1I	ACTGG	5 cut(s)	295, 502, 578, 711, 895
BseAI	TCCGGA	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	984
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	926
BseMII	CTCAG	4 cut(s)	29, 153, 365, 942
BseNI	ACTGG	5 cut(s)	295, 502, 578, 711, 895
BseRI	GAGGAG	2 cut(s)	305, 819
BseXI	GCAGC	2 cut(s)	238, 850
BseYI	CCCAGC	1 cut(s)	197
BsgI	GTGCAG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	111, 133
BshNI	GGYRCC	2 cut(s)	98, 703
BsiSI	CCGG	1 cut(s)	446
BslFI	GGGAC	2 cut(s)	180, 187
BslI	CCNNNNNNNGG	1 cut(s)	926
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	2 cut(s)	180, 187
BsnI	GGCC	2 cut(s)	111, 133
Bsp13I	TCCGGA	1 cut(s)	445
Bsp1407I	TGTACA	1 cut(s)	744
Bsp143I	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	2 cut(s)	51, 899
BspANI	GGCC	2 cut(s)	111, 133
BspCNI	CTCAG	4 cut(s)	28, 154, 364, 943
BspEI	TCCGGA	1 cut(s)	445
BspLI	GGNNCC	7 cut(s)	100, 134, 202, 203, 678, 705, 759
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	4 cut(s)	653, 671, 684, 797
BspT107I	GGYRCC	2 cut(s)	98, 703
BsrGI	TGTACA	1 cut(s)	744
BsrI	ACTGG	5 cut(s)	295, 502, 578, 711, 895
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	984
Bst4CI	ACNGT	2 cut(s)	640, 749
Bst6I	CTCTTC	2 cut(s)	984, 988
BstAUI	TGTACA	1 cut(s)	744
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	7 cut(s)	15, 36, 138, 162, 248, 351, 951
BstDSI	CCRYGG	1 cut(s)	304
BstEII	GGTNACC	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	7 cut(s)	70, 262, 364, 623, 661, 679, 805
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
BstNI	CCWGG	1 cut(s)	984
BstNSI	RCATGY	3 cut(s)	545, 653, 698
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	982
BstSFI	CTRYAG	2 cut(s)	21, 924
BstV1I	GCAGC	2 cut(s)	238, 850
BstX2I	RGATCY	1 cut(s)	676
BstXI	CCANNNNNNTGG	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	676
BsuRI	GGCC	2 cut(s)	111, 133
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	543
Cfr13I	GGNCC	4 cut(s)	110, 132, 201, 917
Csp6I	GTAC	8 cut(s)	85, 99, 235, 377, 431, 561, 732, 745
CviAII	CATG	6 cut(s)	305, 319, 542, 584, 650, 695
CviQI	GTAC	8 cut(s)	85, 99, 235, 377, 431, 561, 732, 745
DdeI	CTNAG	7 cut(s)	15, 36, 138, 162, 248, 351, 951
DpnI	GATC	7 cut(s)	69, 261, 363, 622, 660, 678, 804
DpnII	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
Eam1104I	CTCTTC	2 cut(s)	984, 988
EarI	CTCTTC	2 cut(s)	984, 988
Eco130I	CCWWGG	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	201, 917
Eco91I	GGTNACC	1 cut(s)	308
EcoO109I	RGGNCCY	2 cut(s)	132, 201
EcoO65I	GGTNACC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	982
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	6 cut(s)	308, 322, 545, 587, 653, 698
FaqI	GGGAC	2 cut(s)	180, 187
FatI	CATG	6 cut(s)	304, 318, 541, 583, 649, 694
FauI	CCCGC	1 cut(s)	44
FbaI	TGATCA	2 cut(s)	67, 259
Fnu4HI	GCNGC	3 cut(s)	227, 864, 900
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	227, 864, 900
FspBI	CTAG	3 cut(s)	194, 405, 665
GluI	GCNGC	3 cut(s)	227, 864, 900
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	1005
HaeIII	GGCC	2 cut(s)	111, 133
HapII	CCGG	1 cut(s)	446
Hin1II	CATG	6 cut(s)	308, 322, 545, 587, 653, 698
HinfI	GANTC	8 cut(s)	8, 26, 490, 527, 605, 930, 947, 956
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	1 cut(s)	600
Hpy166II	GTNNAC	2 cut(s)	235, 734
Hpy188I	TCNGA	4 cut(s)	440, 684, 784, 952
Hpy188III	TCNNGA	6 cut(s)	359, 399, 446, 518, 627, 665
Hpy8I	GTNNAC	2 cut(s)	235, 734
Hpy99I	CGWCG	1 cut(s)	772
HpyAV	CCTTC	2 cut(s)	247, 834
HpyCH4III	ACNGT	2 cut(s)	640, 749
HpyCH4V	TGCA	8 cut(s)	151, 226, 292, 322, 541, 694, 866, 884
HpyF3I	CTNAG	7 cut(s)	15, 36, 138, 162, 248, 351, 951
Hsp92II	CATG	6 cut(s)	308, 322, 545, 587, 653, 698
KflI	GGGWCCC	1 cut(s)	201
Kpn2I	TCCGGA	1 cut(s)	445
KpnI	GGTACC	1 cut(s)	102
Ksp22I	TGATCA	2 cut(s)	67, 259
Kzo9I	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
LmnI	GCTCC	1 cut(s)	763
Lsp1109I	GCAGC	2 cut(s)	238, 850
MaeI	CTAG	3 cut(s)	194, 405, 665
MaeIII	GTNAC	3 cut(s)	308, 640, 787
MalI	GATC	7 cut(s)	69, 261, 363, 622, 660, 678, 804
MboI	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
MboII	GAAGA	3 cut(s)	292, 971, 1005
MflI	RGATCY	1 cut(s)	676
MluCI	AATT	4 cut(s)	278, 343, 388, 1002
MlyI	GAGTC	6 cut(s)	2, 35, 499, 924, 950, 956
MmeI	TCCRAC	1 cut(s)	857
MroI	TCCGGA	1 cut(s)	445
MseI	TTAA	7 cut(s)	120, 276, 411, 462, 486, 1005, 1024
MslI	CAYNNNNRTG	1 cut(s)	654
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	1 cut(s)	984
MvaI	CCWGG	1 cut(s)	984
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
NlaIII	CATG	6 cut(s)	308, 322, 545, 587, 653, 698
NlaIV	GGNNCC	7 cut(s)	100, 134, 202, 203, 678, 705, 759
NspI	RCATGY	3 cut(s)	545, 653, 698
PaeI	GCATGC	1 cut(s)	545
PaqCI	CACCTGC	1 cut(s)	220
PciI	ACATGT	1 cut(s)	649
PfeI	GAWTC	2 cut(s)	527, 605
PfoI	TCCNGGA	1 cut(s)	982
PkrI	GCNGC	3 cut(s)	228, 865, 901
PleI	GAGTC	6 cut(s)	2, 34, 498, 924, 950, 955
PpsI	GAGTC	6 cut(s)	2, 34, 498, 924, 950, 955
PpuMI	RGGWCCY	1 cut(s)	201
PscI	ACATGT	1 cut(s)	649
Psp5II	RGGWCCY	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	982
PspEI	GGTNACC	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	982
PspN4I	GGNNCC	7 cut(s)	100, 134, 202, 203, 678, 705, 759
PspPI	GGNCC	4 cut(s)	110, 132, 201, 917
PspPPI	RGGWCCY	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	676
PvuII	CAGCTG	1 cut(s)	73
RsaI	GTAC	8 cut(s)	86, 100, 236, 378, 432, 562, 733, 746
RsaNI	GTAC	8 cut(s)	85, 99, 235, 377, 431, 561, 732, 745
RseI	CAYNNNNRTG	1 cut(s)	654
SaqAI	TTAA	7 cut(s)	120, 276, 411, 462, 486, 1005, 1024
SatI	GCNGC	3 cut(s)	227, 864, 900
Sau3AI	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
Sau96I	GGNCC	4 cut(s)	110, 132, 201, 917
ScaI	AGTACT	1 cut(s)	562
SchI	GAGTC	6 cut(s)	2, 35, 499, 924, 950, 956
ScrFI	CCNGG	1 cut(s)	984
SfcI	CTRYAG	2 cut(s)	21, 924
SinI	GGWCC	2 cut(s)	201, 917
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
SpeI	ACTAGT	1 cut(s)	404
SphI	GCATGC	1 cut(s)	545
Sse9I	AATT	4 cut(s)	278, 343, 388, 1002
SsiI	CCGC	2 cut(s)	51, 899
SspI	AATATT	1 cut(s)	856
SspMI	CTAG	3 cut(s)	194, 405, 665
StyD4I	CCNGG	1 cut(s)	982
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	640, 749
TaqI	TCGA	1 cut(s)	628
TasI	AATT	4 cut(s)	278, 343, 388, 1002
TatI	WGTACW	5 cut(s)	84, 234, 430, 560, 744
TauI	GCSGC	1 cut(s)	902
TfiI	GAWTC	2 cut(s)	527, 605
Tru1I	TTAA	7 cut(s)	120, 276, 411, 462, 486, 1005, 1024
Tru9I	TTAA	7 cut(s)	120, 276, 411, 462, 486, 1005, 1024
TscAI	CASTG	1 cut(s)	150
TseI	GCWGC	2 cut(s)	226, 863
TspDTI	ATGAA	2 cut(s)	79, 1014
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	2 cut(s)	201, 917
XbaI	TCTAGA	1 cut(s)	664
XceI	RCATGY	3 cut(s)	545, 653, 698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XspI	CTAG	3 cut(s)	194, 405, 665
ZrmI	AGTACT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.