Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Forward (+)

21040676 .. 21043391

Gene Structure 2716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023274

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGCATAACCCAAATTCCATCAATCTATTCTCGTCGCTGCCAGTTATGGATAACTCATCTCAGGCTACAGAGTCTAATCCTAAGAATGAGCAAAGCGGGGTGGCAAATGATGATCAGCTGTTTCTCTTGTACTTCATAATGGGTACCTACTTTGGCCCTGATGTTAAAGGAGACAGGCCCCCTAAGTCAGTGTTGCAGAGAATAGCTGAGGGACTTCCACCATATACTTTTGAGCAACTAGCTGGGTCCCAAATCAATACAGCGGAGGTGCAGCAGGTGTACTATTATGTTCTGAGGAAGGCTGATCAATCTGCCATTGTTAAATTACCTTTGTTGCACCAGTTCTTCCATGGTGATCTCCTCATCCAAGGACAAGATGACACAGCCAATTACCCTCAGTGTCCTGATCTCTTTCCTCCTCTACTTCACTACAATTCGCAGTCAAGAACCAGTTTTAACTTCTTTGAGAACATTGTACTTATCAGAAATCCGGAAATATATTACATTAAGCCAGAGGATATAGAAAGATTTAAGAGGCTAACTGGGCTTGAGGGTCTTGTTCTGGATAGAGATTCTGCGAGGTTGCATGCCAATACTGATGGAAGTGCTTTATATGATATGACAGTCCATGAGCAGAAGTCTAATGGAGAATCACCTCCCATTAGATCATCTCGAAGCTCTACTGTAACAAAACATGTAGATGATCCCCGAGAATATAAGGATCCTCTGAAACAAGTGCATGTGGTGGCACCTACCAGTAGTGTGGAATATAATGGCACACCTGTTATGTACAGTTATATGGCTCCTTTGCCGACTGGAAATGGCTCTGATGATGCACAGAATGCTGATCCTGCTATAATTTTTCTTCCTTCTGCTCCAACTGAAAAAGAGTGGTCAAATATTGTAGCTGCAACCAAAAATGGATTTGCATTGACTGGGAGTGCGGCAACAGGGCAGATAGGACCAACTATAGGACTCATTGACATTGGAGAGTCTGAGGACTCCTACCTGTTTCGCGTATCTCTTCCTGGAGTGAGAAGAGATGAAAGGGAATTCAGCTGTGAAGTTGAAAATGAAGGACAAGTGTTGATAAGAGGGGTGACAATAACAGGTGAAAAGACGGTGTATAGGTACTCTCAGATGTTTGAGATGCAAACACAAAATCTTTGCCCTACTGGGCATTTTTCTATCTCATTCCAGCTGCCTGGTCCAGTTAATCCCCAGCAGTTTTCTGGTAATTTTGGCACTGACGGAATCCTTGAAGGAGTTGTGATGAAACGCTTAGATGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

432

Amino Acids

47.92

Weight (kDa)

4.97

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	265
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	2 cut(s)	143, 748
AccII	CGCG	1 cut(s)	1017
AccIII	TCCGGA	1 cut(s)	490
AciI	CCGC	3 cut(s)	96, 263, 944
AclWI	GGATC	4 cut(s)	698, 716, 729, 842
AcsI	RAATTY	2 cut(s)	13, 1052
AfaI	GTAC	6 cut(s)	131, 145, 281, 477, 791, 1133
AfiI	CCNNNNNNNGG	1 cut(s)	971
AflIII	ACRYGT	1 cut(s)	694
AgsI	TTSAA	2 cut(s)	1070, 1262
AjnI	CCWGG	2 cut(s)	1027, 1204
AluBI	AGCT	7 cut(s)	118, 206, 242, 678, 908, 1059, 1201
AluI	AGCT	7 cut(s)	118, 206, 242, 678, 908, 1059, 1201
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	4 cut(s)	698, 716, 729, 842
Ama87I	CYCGRG	1 cut(s)	708
Aor13HI	TCCGGA	1 cut(s)	490
AoxI	GGCC	2 cut(s)	154, 176
ApeKI	GCWGC	4 cut(s)	37, 271, 908, 1201
ApoI	RAATTY	2 cut(s)	13, 1052
Asp718I	GGTACC	1 cut(s)	143
AspS9I	GGNCC	5 cut(s)	155, 177, 246, 962, 1208
AsuHPI	GGTGA	4 cut(s)	365, 645, 1111, 1124
AvaI	CYCGRG	1 cut(s)	708
AvaII	GGWCC	3 cut(s)	246, 962, 1208
BamHI	GGATCC	1 cut(s)	721
BanI	GGYRCC	2 cut(s)	143, 748
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	24, 283, 895, 1188
BccI	CCATC	2 cut(s)	26, 593
BciT130I	CCWGG	2 cut(s)	1029, 1206
BclI	TGATCA	2 cut(s)	112, 304
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	2 cut(s)	66, 969
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	5 cut(s)	38, 272, 909, 945, 1202
BlsI	GCNGC	5 cut(s)	39, 273, 910, 946, 1203
Bme1390I	CCNGG	2 cut(s)	1029, 1206
Bme18I	GGWCC	3 cut(s)	246, 962, 1208
BmeT110I	CYCGRG	1 cut(s)	708
BmgT120I	GGNCC	5 cut(s)	155, 177, 246, 962, 1208
BmiI	GGNNCC	7 cut(s)	145, 179, 247, 248, 723, 750, 804
BmrFI	CCNGG	2 cut(s)	1029, 1206
BmrI	ACTGGG	3 cut(s)	552, 945, 1185
BmsI	GCATC	2 cut(s)	823, 1140
BmuI	ACTGGG	3 cut(s)	552, 945, 1185
BpmI	CTGGAG	1 cut(s)	1050
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	349, 367
BsaWI	WCCGGW	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	1 cut(s)	971
Bse1I	ACTGG	9 cut(s)	41, 340, 450, 547, 756, 820, 940, 1180, 1211
BseAI	TCCGGA	1 cut(s)	490
BseBI	CCWGG	2 cut(s)	1029, 1206
BseDI	CCNNGG	2 cut(s)	349, 367
BseGI	GGATG	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	971
BseMII	CTCAG	6 cut(s)	74, 198, 284, 410, 987, 1151
BseNI	ACTGG	9 cut(s)	41, 340, 450, 547, 756, 820, 940, 1180, 1211
BseRI	GAGGAG	2 cut(s)	350, 408
BseXI	GCAGC	4 cut(s)	24, 283, 895, 1188
BseYI	CCCAGC	2 cut(s)	242, 1221
BsgI	GTGCAG	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	1017
BshFI	GGCC	2 cut(s)	156, 178
BshNI	GGYRCC	2 cut(s)	143, 748
BsiHKCI	CYCGRG	1 cut(s)	708
BsiSI	CCGG	1 cut(s)	491
BslFI	GGGAC	2 cut(s)	225, 232
BslI	CCNNNNNNNGG	1 cut(s)	971
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	2 cut(s)	225, 232
BsmI	GAATGC	1 cut(s)	847
BsnI	GGCC	2 cut(s)	156, 178
BsoBI	CYCGRG	1 cut(s)	708
Bsp13I	TCCGGA	1 cut(s)	490
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	8 cut(s)	112, 304, 355, 406, 665, 703, 721, 847
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	3 cut(s)	96, 263, 944
BspANI	GGCC	2 cut(s)	156, 178
BspCNI	CTCAG	6 cut(s)	73, 199, 285, 409, 988, 1150
BspEI	TCCGGA	1 cut(s)	490
BspFNI	CGCG	1 cut(s)	1017
BspLI	GGNNCC	7 cut(s)	145, 179, 247, 248, 723, 750, 804
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	4 cut(s)	698, 716, 729, 842
BspT107I	GGYRCC	2 cut(s)	143, 748
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	9 cut(s)	41, 340, 450, 547, 756, 820, 940, 1180, 1211
BssECI	CCNNGG	2 cut(s)	349, 367
BssMI	GATC	8 cut(s)	112, 304, 355, 406, 665, 703, 721, 847
BssT1I	CCWWGG	2 cut(s)	349, 367
Bst2UI	CCWGG	2 cut(s)	1029, 1206
Bst4CI	ACNGT	4 cut(s)	625, 685, 794, 1123
Bst6I	CTCTTC	2 cut(s)	1029, 1033
BstAPI	GCANNNNNTGC	1 cut(s)	842
BstAUI	TGTACA	1 cut(s)	789
BstC8I	GCNNGC	1 cut(s)	588
BstDEI	CTNAG	9 cut(s)	60, 81, 183, 207, 293, 396, 996, 1137, 1282
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	363
BstFNI	CGCG	1 cut(s)	1017
BstKTI	GATC	8 cut(s)	115, 307, 358, 409, 668, 706, 724, 850
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	8 cut(s)	112, 304, 355, 406, 665, 703, 721, 847
BstMWI	GCNNNNNNNGC	3 cut(s)	544, 842, 851
BstNI	CCWGG	2 cut(s)	1029, 1206
BstNSI	RCATGY	3 cut(s)	590, 698, 743
BstSCI	CCNGG	2 cut(s)	1027, 1204
BstSFI	CTRYAG	2 cut(s)	66, 969
BstUI	CGCG	1 cut(s)	1017
BstV1I	GCAGC	4 cut(s)	24, 283, 895, 1188
BstX2I	RGATCY	1 cut(s)	721
BstXI	CCANNNNNNTGG	2 cut(s)	763, 1205
BstYI	RGATCY	1 cut(s)	721
BsuRI	GGCC	2 cut(s)	156, 178
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	195, 404, 1245
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	588
Cfr13I	GGNCC	5 cut(s)	155, 177, 246, 962, 1208
Csp6I	GTAC	6 cut(s)	130, 144, 280, 476, 790, 1132
CviAII	CATG	5 cut(s)	350, 587, 629, 695, 740
CviQI	GTAC	6 cut(s)	130, 144, 280, 476, 790, 1132
DdeI	CTNAG	9 cut(s)	60, 81, 183, 207, 293, 396, 996, 1137, 1282
DpnI	GATC	8 cut(s)	114, 306, 357, 408, 667, 705, 723, 849
DpnII	GATC	8 cut(s)	112, 304, 355, 406, 665, 703, 721, 847
Eam1104I	CTCTTC	2 cut(s)	1029, 1033
EarI	CTCTTC	2 cut(s)	1029, 1033
Eco130I	CCWWGG	2 cut(s)	349, 367
Eco47I	GGWCC	3 cut(s)	246, 962, 1208
Eco88I	CYCGRG	1 cut(s)	708
EcoO109I	RGGNCCY	2 cut(s)	177, 246
EcoRI	GAATTC	1 cut(s)	1052
EcoRII	CCWGG	2 cut(s)	1027, 1204
EcoT14I	CCWWGG	2 cut(s)	349, 367
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	349, 367
FaeI	CATG	5 cut(s)	353, 590, 632, 698, 743
FaqI	GGGAC	2 cut(s)	225, 232
FatI	CATG	5 cut(s)	349, 586, 628, 694, 739
FauI	CCCGC	1 cut(s)	89
FbaI	TGATCA	2 cut(s)	112, 304
Fnu4HI	GCNGC	5 cut(s)	38, 272, 909, 945, 1202
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	5 cut(s)	38, 272, 909, 945, 1202
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	5 cut(s)	38, 272, 909, 945, 1202
GsaI	CCCAGC	2 cut(s)	246, 1225
GsuI	CTGGAG	1 cut(s)	1050
HaeIII	GGCC	2 cut(s)	156, 178
HapII	CCGG	1 cut(s)	491
Hin1II	CATG	5 cut(s)	353, 590, 632, 698, 743
HinfI	GANTC	7 cut(s)	71, 572, 650, 975, 992, 1001, 1254
HpaII	CCGG	1 cut(s)	491
HphI	GGTGA	4 cut(s)	365, 645, 1111, 1124
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	6 cut(s)	294, 485, 729, 829, 997, 1140
Hpy188III	TCNNGA	5 cut(s)	404, 444, 491, 563, 672
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	4 cut(s)	292, 879, 1070, 1256
HpyCH4III	ACNGT	4 cut(s)	625, 685, 794, 1123
HpyF10VI	GCNNNNNNNGC	3 cut(s)	544, 842, 851
HpyF3I	CTNAG	9 cut(s)	60, 81, 183, 207, 293, 396, 996, 1137, 1282
Hsp92II	CATG	5 cut(s)	353, 590, 632, 698, 743
KflI	GGGWCCC	1 cut(s)	246
Kpn2I	TCCGGA	1 cut(s)	490
KpnI	GGTACC	1 cut(s)	147
Ksp22I	TGATCA	2 cut(s)	112, 304
Kzo9I	GATC	8 cut(s)	112, 304, 355, 406, 665, 703, 721, 847
LmnI	GCTCC	2 cut(s)	808, 880
Lsp1109I	GCAGC	4 cut(s)	24, 283, 895, 1188
LweI	GCATC	2 cut(s)	823, 1140
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	2 cut(s)	685, 1099
MalI	GATC	8 cut(s)	114, 306, 357, 408, 667, 705, 723, 849
MboI	GATC	8 cut(s)	112, 304, 355, 406, 665, 703, 721, 847
MboII	GAAGA	4 cut(s)	337, 857, 1016, 1050
MflI	RGATCY	1 cut(s)	721
MluCI	AATT	7 cut(s)	13, 323, 388, 433, 858, 1052, 1237
MlyI	GAGTC	4 cut(s)	80, 969, 995, 1001
MmeI	TCCRAC	1 cut(s)	902
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	490
MseI	TTAA	6 cut(s)	165, 321, 456, 507, 531, 1215
MslI	CAYNNNNRTG	1 cut(s)	699
MspA1I	CMGCKG	4 cut(s)	118, 263, 1059, 1201
MspI	CCGG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	1029, 1206
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	2 cut(s)	1029, 1206
MvnI	CGCG	1 cut(s)	1017
MwoI	GCNNNNNNNGC	3 cut(s)	544, 842, 851
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	8 cut(s)	112, 304, 355, 406, 665, 703, 721, 847
NlaIII	CATG	5 cut(s)	353, 590, 632, 698, 743
NlaIV	GGNNCC	7 cut(s)	145, 179, 247, 248, 723, 750, 804
NmuCI	GTSAC	1 cut(s)	1099
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	590, 698, 743
PaeI	GCATGC	1 cut(s)	590
PaqCI	CACCTGC	1 cut(s)	265
PciI	ACATGT	1 cut(s)	694
PctI	GAATGC	1 cut(s)	847
PfeI	GAWTC	3 cut(s)	572, 650, 1254
PfoI	TCCNGGA	1 cut(s)	1027
PkrI	GCNGC	5 cut(s)	39, 273, 910, 946, 1203
PleI	GAGTC	4 cut(s)	79, 969, 995, 1000
PpsI	GAGTC	4 cut(s)	79, 969, 995, 1000
PpuMI	RGGWCCY	1 cut(s)	246
PscI	ACATGT	1 cut(s)	694
Psp5II	RGGWCCY	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	1027, 1204
PspFI	CCCAGC	2 cut(s)	242, 1221
PspGI	CCWGG	2 cut(s)	1027, 1204
PspN4I	GGNNCC	7 cut(s)	145, 179, 247, 248, 723, 750, 804
PspPI	GGNCC	5 cut(s)	155, 177, 246, 962, 1208
PspPPI	RGGWCCY	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	721
PvuII	CAGCTG	3 cut(s)	118, 1059, 1201
RsaI	GTAC	6 cut(s)	131, 145, 281, 477, 791, 1133
RsaNI	GTAC	6 cut(s)	130, 144, 280, 476, 790, 1132
RseI	CAYNNNNRTG	1 cut(s)	699
SaqAI	TTAA	6 cut(s)	165, 321, 456, 507, 531, 1215
SatI	GCNGC	5 cut(s)	38, 272, 909, 945, 1202
Sau3AI	GATC	8 cut(s)	112, 304, 355, 406, 665, 703, 721, 847
Sau96I	GGNCC	5 cut(s)	155, 177, 246, 962, 1208
SchI	GAGTC	4 cut(s)	80, 969, 995, 1001
ScrFI	CCNGG	2 cut(s)	1029, 1206
SfaNI	GCATC	2 cut(s)	823, 1140
SfcI	CTRYAG	2 cut(s)	66, 969
SinI	GGWCC	3 cut(s)	246, 962, 1208
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
SphI	GCATGC	1 cut(s)	590
Sse9I	AATT	7 cut(s)	13, 323, 388, 433, 858, 1052, 1237
SsiI	CCGC	3 cut(s)	96, 263, 944
SspI	AATATT	1 cut(s)	901
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	1027, 1204
StyI	CCWWGG	2 cut(s)	349, 367
TaaI	ACNGT	4 cut(s)	625, 685, 794, 1123
TaqI	TCGA	1 cut(s)	673
TasI	AATT	7 cut(s)	13, 323, 388, 433, 858, 1052, 1237
TatI	WGTACW	4 cut(s)	129, 279, 475, 789
TauI	GCSGC	1 cut(s)	947
TfiI	GAWTC	3 cut(s)	572, 650, 1254
Tru1I	TTAA	6 cut(s)	165, 321, 456, 507, 531, 1215
Tru9I	TTAA	6 cut(s)	165, 321, 456, 507, 531, 1215
TscAI	CASTG	3 cut(s)	195, 404, 1252
TseFI	GTSAC	1 cut(s)	1099
TseI	GCWGC	4 cut(s)	37, 271, 908, 1201
Tsp45I	GTSAC	1 cut(s)	1099
TspDTI	ATGAA	4 cut(s)	124, 1059, 1089, 1289
TspGWI	ACGGA	1 cut(s)	1266
TspRI	CASTG	3 cut(s)	195, 404, 1252
VpaK11BI	GGWCC	3 cut(s)	246, 962, 1208
XapI	RAATTY	2 cut(s)	13, 1052
XceI	RCATGY	3 cut(s)	590, 698, 743
XcmI	CCANNNNNNNNNTGG	2 cut(s)	347, 1229
XspI	CTAG	1 cut(s)	239
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.