Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Reverse (-)

29089019 .. 29096061

Gene Structure 7043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG285300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGATGACTCATCTCAGGCTACAGAGTCTAATCCTAAGAATGAGCAAAGCGGGGTGGCAAATGATGATCAGCTGTTTCTGTTGTACTTCATAATGGATCGAAATCCGGAAATATATTACATTAAGCCAGAGGATATAGATAGATTTAAGAGGCTAACTGGGCTTGAGGATCTTGTTCTGGATAGAGATTCTGCGAGGTTGCATGCCAATACTGATGGAAGGGAATTCAGCTGTGAAGTTGAAAATGAAGGACAAGTATTGATAAGAGGGGTGACAATAATAGGTGAAAAGACAGTGTATAGGTACTCTCAGATGTTTGAGATGCAAACACAAAATCTTTGCCCTACTGGGCATTTTTCTATCTCATTCCAGCTGCCTGGTCCAGTTAATCCCCAGCAGTTTTCTGGTAATTTTGGCACTGACGGAATCCTTGAAGGAGTTGTGATGAAACGCTTAGATGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

155

Amino Acids

17.63

Weight (kDa)

4.59

Isoelectric Point (pI)

29.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	106
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	2 cut(s)	105, 177
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	2 cut(s)	86, 305
AgsI	TTSAA	2 cut(s)	242, 434
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	3 cut(s)	73, 231, 373
AluI	AGCT	3 cut(s)	73, 231, 373
AlwI	GGATC	2 cut(s)	105, 177
Aor13HI	TCCGGA	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	373
ApoI	RAATTY	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	2 cut(s)	283, 296
AvaII	GGWCC	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	378
BclI	TGATCA	1 cut(s)	67
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	375
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	378
BmrI	ACTGGG	2 cut(s)	168, 357
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	2 cut(s)	168, 357
BpuEI	CTTGAG	1 cut(s)	185
BsaBI	GATNNNNATC	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	106
Bse1I	ACTGG	3 cut(s)	163, 352, 383
Bse8I	GATNNNNATC	1 cut(s)	102
BseAI	TCCGGA	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	29, 323
BseNI	ACTGG	3 cut(s)	163, 352, 383
BseXI	GCAGC	1 cut(s)	360
BseYI	CCCAGC	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	107
Bsp13I	TCCGGA	1 cut(s)	106
Bsp143I	GATC	3 cut(s)	67, 97, 169
BspACI	CCGC	1 cut(s)	51
BspCNI	CTCAG	2 cut(s)	28, 322
BspEI	TCCGGA	1 cut(s)	106
BspPI	GGATC	2 cut(s)	105, 177
BsrI	ACTGG	3 cut(s)	163, 352, 383
BssMI	GATC	3 cut(s)	67, 97, 169
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	4 cut(s)	15, 36, 309, 454
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	3 cut(s)	70, 100, 172
BstMBI	GATC	3 cut(s)	67, 97, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	300, 417
Cac8I	GCNNGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	85, 304
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	7 cut(s)	20, 73, 127, 154, 163, 231, 373
CviKI_1	RGCY	7 cut(s)	20, 73, 127, 154, 163, 231, 373
CviQI	GTAC	2 cut(s)	85, 304
DdeI	CTNAG	4 cut(s)	15, 36, 309, 454
DpnI	GATC	3 cut(s)	69, 99, 171
DpnII	GATC	3 cut(s)	67, 97, 169
Eco47I	GGWCC	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	376
FaeI	CATG	1 cut(s)	206
FaiI	YATR	5 cut(s)	92, 115, 137, 204, 300
FatI	CATG	1 cut(s)	202
FauI	CCCGC	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	374
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	374
GluI	GCNGC	1 cut(s)	374
GsaI	CCCAGC	1 cut(s)	397
HapII	CCGG	1 cut(s)	107
Hin1II	CATG	1 cut(s)	206
HinfI	GANTC	4 cut(s)	8, 26, 188, 426
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	2 cut(s)	283, 296
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	2 cut(s)	107, 179
HpyAV	CCTTC	3 cut(s)	213, 242, 428
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	202, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	4 cut(s)	15, 36, 309, 454
Hsp92II	CATG	1 cut(s)	206
Kpn2I	TCCGGA	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	67, 97, 169
Lsp1109I	GCAGC	1 cut(s)	360
LweI	GCATC	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	3 cut(s)	69, 99, 171
MboI	GATC	3 cut(s)	67, 97, 169
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	2 cut(s)	224, 409
MlyI	GAGTC	2 cut(s)	2, 35
MnlI	CCTC	5 cut(s)	124, 144, 160, 189, 260
MroI	TCCGGA	1 cut(s)	106
MseI	TTAA	3 cut(s)	123, 147, 387
MspA1I	CMGCKG	3 cut(s)	73, 231, 373
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	3 cut(s)	67, 97, 169
NlaIII	CATG	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	188, 426
PkrI	GCNGC	1 cut(s)	375
PleI	GAGTC	2 cut(s)	2, 34
PpsI	GAGTC	2 cut(s)	2, 34
Psp6I	CCWGG	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	376
PspPI	GGNCC	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	169
PvuII	CAGCTG	3 cut(s)	73, 231, 373
RsaI	GTAC	2 cut(s)	86, 305
RsaNI	GTAC	2 cut(s)	85, 304
SaqAI	TTAA	3 cut(s)	123, 147, 387
SatI	GCNGC	1 cut(s)	374
Sau3AI	GATC	3 cut(s)	67, 97, 169
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	2 cut(s)	2, 35
ScrFI	CCNGG	1 cut(s)	378
SetI	ASST	6 cut(s)	75, 200, 233, 286, 305, 375
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	224, 409
SsiI	CCGC	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	100
TasI	AATT	2 cut(s)	224, 409
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	188, 426
Tru1I	TTAA	3 cut(s)	123, 147, 387
Tru9I	TTAA	3 cut(s)	123, 147, 387
TscAI	CASTG	2 cut(s)	300, 424
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	373
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	3 cut(s)	79, 261, 461
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	2 cut(s)	300, 424
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.