Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Reverse (-)

27842136 .. 27845328

Gene Structure 3193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG254800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCATAACCCAAATTCCATCAATCTACTCTCGTCGCTGCCAGTTATGGATGACTCATCCCAGGCTACAGAGTCTAATCCTAAGAATGAGCAAAGCGGGATGGCAAATGATGATCAGATGTTTCTCTTGTACTTCATAATGGGTACCTACTTTGGCCCTGATGTTAAAGGAGACAGGCCCCCTAAGTCAGTGTTGCAGAGAATAGCTGAGGGACTTCCACCATATACTTTTGAGCAACTAGCTGGGTCCCAAATCAATACAGCGGAGGTGCAGCAGGTGTACTATTATGTTCTTAGGAAGGCTGATCAATCTGCCATTGTTAAATTACCTTTGTTGCACCAGTTCTTCCATGGTAATCTCCTCATCCAAGGACAAGATGACACAGCCAATTACCCTCAGTTTCCTGATCTCTTTCCTCCCCTACTTCACTACAATTCGCAGTCAAGAACCAGTTTTAACTTCTTTGAGAACATTGTACTTATCAGAAATCCGGAAATATATTACATTAAGCCAGAGGATATAGAAAGATTTAAGAGGCTAACTGGGCTTGAGGGTCTTGTTCTGGATAGAGATTCTGCGAGGTTGCATGCCATTACTGATGGAAGTACTTTATATGATATGACAGTCCATGAGCAGAAGTCTAATGGAGAATCACCTCCCATTAGATCATCTCGAAGCTCTACTGTAACAAAACATGTAGATGATCCTCTAGAATATAAGGATCCTCTGAATCAAGTGCATGTGGTGGCACCTACCAGTAGTGTGGAATATAATAGTACACCTGTTATGTACAGTTATATGGCTCCTTTGCCGACGGGAAATGGCTCTGATGTTACACAGAATGTTGATCCTGCTATGATTTTTCTTCCAACTGAAAAAGAGTGGTCAAATATTGTAGCTGCAACCAAAAATGGATTTGCATTGACTGGGAGTGCGGCAACAGGACATATAGGACCAACTATAGGACTCATTGACATTGGAGAGTCTGAGGACTCCTACCTGTTTCGTGTATCTCTTCCCGGAGTGAGAAGAGATGAAAGTAAGTTTCTCTATACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

353

Amino Acids

39.44

Weight (kDa)

4.98

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	265
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	2 cut(s)	143, 748
AccIII	TCCGGA	1 cut(s)	490
AciI	CCGC	3 cut(s)	96, 263, 935
AclWI	GGATC	4 cut(s)	698, 716, 729, 842
AcsI	RAATTY	1 cut(s)	13
AfaI	GTAC	7 cut(s)	131, 145, 281, 477, 607, 778, 791
AfiI	CCNNNNNNNGG	1 cut(s)	962
AflIII	ACRYGT	1 cut(s)	694
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	4 cut(s)	206, 242, 678, 899
AluI	AGCT	4 cut(s)	206, 242, 678, 899
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	4 cut(s)	698, 716, 729, 842
Aor13HI	TCCGGA	1 cut(s)	490
AoxI	GGCC	2 cut(s)	154, 176
ApeKI	GCWGC	3 cut(s)	37, 271, 899
ApoI	RAATTY	1 cut(s)	13
Asp718I	GGTACC	1 cut(s)	143
AspS9I	GGNCC	4 cut(s)	155, 177, 246, 953
AsuC2I	CCSGG	1 cut(s)	1020
AsuHPI	GGTGA	1 cut(s)	645
AvaII	GGWCC	2 cut(s)	246, 953
BamHI	GGATCC	1 cut(s)	721
BanI	GGYRCC	2 cut(s)	143, 748
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	24, 283, 886
BccI	CCATC	3 cut(s)	26, 94, 593
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	2 cut(s)	112, 304
BcnI	CCSGG	1 cut(s)	1020
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	239, 710
BfmI	CTRYAG	2 cut(s)	66, 960
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	4 cut(s)	38, 272, 900, 936
BlsI	GCNGC	4 cut(s)	39, 273, 901, 937
BmcAI	AGTACT	1 cut(s)	607
Bme1390I	CCNGG	2 cut(s)	62, 1020
Bme18I	GGWCC	2 cut(s)	246, 953
BmgT120I	GGNCC	4 cut(s)	155, 177, 246, 953
BmiI	GGNNCC	7 cut(s)	145, 179, 247, 248, 723, 750, 804
BmrFI	CCNGG	2 cut(s)	62, 1020
BmrI	ACTGGG	2 cut(s)	552, 936
BmuI	ACTGGG	2 cut(s)	552, 936
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	1020
BsaJI	CCNNGG	3 cut(s)	60, 349, 367
BsaWI	WCCGGW	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	1 cut(s)	962
Bse1I	ACTGG	6 cut(s)	41, 340, 450, 547, 756, 931
BseAI	TCCGGA	1 cut(s)	490
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	3 cut(s)	60, 349, 367
BseGI	GGATG	4 cut(s)	55, 56, 105, 363
BseLI	CCNNNNNNNGG	1 cut(s)	962
BseMII	CTCAG	3 cut(s)	198, 410, 978
BseNI	ACTGG	6 cut(s)	41, 340, 450, 547, 756, 931
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	3 cut(s)	24, 283, 886
BseYI	CCCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	290
BshFI	GGCC	2 cut(s)	156, 178
BshNI	GGYRCC	2 cut(s)	143, 748
BsiSI	CCGG	2 cut(s)	491, 1020
BslFI	GGGAC	2 cut(s)	225, 232
BslI	CCNNNNNNNGG	1 cut(s)	962
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	2 cut(s)	225, 232
BsnI	GGCC	2 cut(s)	156, 178
Bsp13I	TCCGGA	1 cut(s)	490
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	7 cut(s)	112, 304, 406, 665, 703, 721, 847
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	3 cut(s)	96, 263, 935
BspANI	GGCC	2 cut(s)	156, 178
BspCNI	CTCAG	3 cut(s)	199, 409, 979
BspEI	TCCGGA	1 cut(s)	490
BspLI	GGNNCC	7 cut(s)	145, 179, 247, 248, 723, 750, 804
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	4 cut(s)	698, 716, 729, 842
BspT107I	GGYRCC	2 cut(s)	143, 748
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	6 cut(s)	41, 340, 450, 547, 756, 931
BssECI	CCNNGG	3 cut(s)	60, 349, 367
BssMI	GATC	7 cut(s)	112, 304, 406, 665, 703, 721, 847
BssT1I	CCWWGG	2 cut(s)	349, 367
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	3 cut(s)	625, 685, 794
Bst6I	CTCTTC	2 cut(s)	1020, 1024
BstAUI	TGTACA	1 cut(s)	789
BstC8I	GCNNGC	1 cut(s)	588
BstDEI	CTNAG	6 cut(s)	81, 183, 207, 293, 396, 987
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	4 cut(s)	55, 56, 105, 363
BstKTI	GATC	7 cut(s)	115, 307, 409, 668, 706, 724, 850
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	7 cut(s)	112, 304, 406, 665, 703, 721, 847
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	3 cut(s)	590, 698, 743
BstSCI	CCNGG	2 cut(s)	60, 1018
BstSFI	CTRYAG	2 cut(s)	66, 960
BstV1I	GCAGC	3 cut(s)	24, 283, 886
BstX2I	RGATCY	1 cut(s)	721
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	721
BsuRI	GGCC	2 cut(s)	156, 178
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	4 cut(s)	55, 56, 105, 363
BtsIMutI	CAGTG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	588
Cfr13I	GGNCC	4 cut(s)	155, 177, 246, 953
Csp6I	GTAC	7 cut(s)	130, 144, 280, 476, 606, 777, 790
CviAII	CATG	5 cut(s)	350, 587, 629, 695, 740
CviQI	GTAC	7 cut(s)	130, 144, 280, 476, 606, 777, 790
DdeI	CTNAG	6 cut(s)	81, 183, 207, 293, 396, 987
DpnI	GATC	7 cut(s)	114, 306, 408, 667, 705, 723, 849
DpnII	GATC	7 cut(s)	112, 304, 406, 665, 703, 721, 847
Eam1104I	CTCTTC	2 cut(s)	1020, 1024
EarI	CTCTTC	2 cut(s)	1020, 1024
Eco130I	CCWWGG	2 cut(s)	349, 367
Eco47I	GGWCC	2 cut(s)	246, 953
EcoO109I	RGGNCCY	2 cut(s)	177, 246
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	2 cut(s)	349, 367
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	349, 367
FaeI	CATG	5 cut(s)	353, 590, 632, 698, 743
FaqI	GGGAC	2 cut(s)	225, 232
FatI	CATG	5 cut(s)	349, 586, 628, 694, 739
FauI	CCCGC	1 cut(s)	89
FbaI	TGATCA	2 cut(s)	112, 304
Fnu4HI	GCNGC	4 cut(s)	38, 272, 900, 936
FokI	GGATG	4 cut(s)	43, 62, 112, 350
Fsp4HI	GCNGC	4 cut(s)	38, 272, 900, 936
FspBI	CTAG	2 cut(s)	239, 710
GluI	GCNGC	4 cut(s)	38, 272, 900, 936
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	156, 178
HapII	CCGG	2 cut(s)	491, 1020
Hin1II	CATG	5 cut(s)	353, 590, 632, 698, 743
HinfI	GANTC	8 cut(s)	53, 71, 572, 650, 730, 966, 983, 992
HpaII	CCGG	2 cut(s)	491, 1020
HphI	GGTGA	1 cut(s)	645
Hpy166II	GTNNAC	2 cut(s)	280, 779
Hpy188I	TCNGA	5 cut(s)	117, 485, 729, 829, 988
Hpy188III	TCNNGA	6 cut(s)	404, 444, 491, 563, 672, 710
Hpy8I	GTNNAC	2 cut(s)	280, 779
Hpy99I	CGWCG	2 cut(s)	37, 817
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	3 cut(s)	625, 685, 794
HpyCH4V	TGCA	8 cut(s)	4, 196, 271, 337, 586, 739, 902, 920
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	6 cut(s)	81, 183, 207, 293, 396, 987
Hsp92II	CATG	5 cut(s)	353, 590, 632, 698, 743
KflI	GGGWCCC	1 cut(s)	246
Kpn2I	TCCGGA	1 cut(s)	490
KpnI	GGTACC	1 cut(s)	147
Ksp22I	TGATCA	2 cut(s)	112, 304
Kzo9I	GATC	7 cut(s)	112, 304, 406, 665, 703, 721, 847
LmnI	GCTCC	1 cut(s)	808
Lsp1109I	GCAGC	3 cut(s)	24, 283, 886
MaeI	CTAG	2 cut(s)	239, 710
MaeIII	GTNAC	2 cut(s)	685, 832
MalI	GATC	7 cut(s)	114, 306, 408, 667, 705, 723, 849
MboI	GATC	7 cut(s)	112, 304, 406, 665, 703, 721, 847
MboII	GAAGA	4 cut(s)	337, 857, 1007, 1041
MflI	RGATCY	1 cut(s)	721
MluCI	AATT	4 cut(s)	13, 323, 388, 433
MlyI	GAGTC	5 cut(s)	47, 80, 960, 986, 992
MmeI	TCCRAC	1 cut(s)	893
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	490
MseI	TTAA	6 cut(s)	165, 321, 456, 507, 531, 1060
MslI	CAYNNNNRTG	1 cut(s)	699
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	2 cut(s)	491, 1020
MspR9I	CCNGG	2 cut(s)	62, 1020
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	544
NciI	CCSGG	1 cut(s)	1020
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	7 cut(s)	112, 304, 406, 665, 703, 721, 847
NlaIII	CATG	5 cut(s)	353, 590, 632, 698, 743
NlaIV	GGNNCC	7 cut(s)	145, 179, 247, 248, 723, 750, 804
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	590, 698, 743
PaeI	GCATGC	1 cut(s)	590
PaqCI	CACCTGC	1 cut(s)	265
PciI	ACATGT	1 cut(s)	694
PfeI	GAWTC	3 cut(s)	572, 650, 730
PfoI	TCCNGGA	1 cut(s)	1018
PkrI	GCNGC	4 cut(s)	39, 273, 901, 937
PleI	GAGTC	5 cut(s)	47, 79, 960, 986, 991
PpsI	GAGTC	5 cut(s)	47, 79, 960, 986, 991
PpuMI	RGGWCCY	1 cut(s)	246
PscI	ACATGT	1 cut(s)	694
Psp5II	RGGWCCY	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	7 cut(s)	145, 179, 247, 248, 723, 750, 804
PspPI	GGNCC	4 cut(s)	155, 177, 246, 953
PspPPI	RGGWCCY	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	721
RsaI	GTAC	7 cut(s)	131, 145, 281, 477, 607, 778, 791
RsaNI	GTAC	7 cut(s)	130, 144, 280, 476, 606, 777, 790
RseI	CAYNNNNRTG	1 cut(s)	699
SaqAI	TTAA	6 cut(s)	165, 321, 456, 507, 531, 1060
SatI	GCNGC	4 cut(s)	38, 272, 900, 936
Sau3AI	GATC	7 cut(s)	112, 304, 406, 665, 703, 721, 847
Sau96I	GGNCC	4 cut(s)	155, 177, 246, 953
ScaI	AGTACT	1 cut(s)	607
SchI	GAGTC	5 cut(s)	47, 80, 960, 986, 992
ScrFI	CCNGG	2 cut(s)	62, 1020
SfcI	CTRYAG	2 cut(s)	66, 960
SinI	GGWCC	2 cut(s)	246, 953
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
SphI	GCATGC	1 cut(s)	590
Sse9I	AATT	4 cut(s)	13, 323, 388, 433
SsiI	CCGC	3 cut(s)	96, 263, 935
SspI	AATATT	1 cut(s)	892
SspMI	CTAG	2 cut(s)	239, 710
StyD4I	CCNGG	2 cut(s)	60, 1018
StyI	CCWWGG	2 cut(s)	349, 367
TaaI	ACNGT	3 cut(s)	625, 685, 794
TaqI	TCGA	1 cut(s)	673
TasI	AATT	4 cut(s)	13, 323, 388, 433
TatI	WGTACW	6 cut(s)	129, 279, 475, 605, 776, 789
TauI	GCSGC	1 cut(s)	938
TfiI	GAWTC	3 cut(s)	572, 650, 730
Tru1I	TTAA	6 cut(s)	165, 321, 456, 507, 531, 1060
Tru9I	TTAA	6 cut(s)	165, 321, 456, 507, 531, 1060
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	3 cut(s)	37, 271, 899
TspDTI	ATGAA	2 cut(s)	124, 1050
TspRI	CASTG	1 cut(s)	195
VpaK11BI	GGWCC	2 cut(s)	246, 953
XapI	RAATTY	1 cut(s)	13
XbaI	TCTAGA	1 cut(s)	709
XceI	RCATGY	3 cut(s)	590, 698, 743
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XspI	CTAG	2 cut(s)	239, 710
ZrmI	AGTACT	1 cut(s)	607
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.