Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Reverse (-)

7082264 .. 7083686

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGATGGCCCGTCTCAGGCGACAGGATCTAATCCTGCCTCAGGGTTAGATTTTAACAATTTTCAAAGTAGGATGGCAAATGATGATCAGCGCTTTCTCTTGTACTTCATTATCGGTACCTACTTTGGGCCTGATCTTAAAGGAGAGAGGCCATCAAAGTCAGTGTTGCAGAGAATAGCTGAGCGACTTCCACCATATACTATTGAGCAACTAGGTGGCTCCCGCCTGAAAATGGCAGAGGTAGAGCAGGTGTACTATTATGTTCTTCGGAAGGCTGACCAATCTGCCATTGCTAAATTACCTTTGTTAAGCCAGTTCTTCCATGGTAGCCTCCGTACCCATAGAGAAGATGCCACAGCCAATTACCCTCAGTTTACGGATCTCTTTCCTCGTCTCCTCCACCCCCATTCACAGTTCAATAACAAAGATGATATCTTTGAGAACATTGTATTTATTCATAACCCAGAAATATATTACATTAAGCCAAAGGATATCGAACGATTTAAGAGGCTTACTGGACTGGAGGATTTTCTTCTGGATAGAGATGCTGCAAAGCTGCATACTGTTCCTGATGGAAGTGTTTTATATAATGTGTTGGAGCAGGAGCCGAAGTCCAATGCTGCCACAAGAGATGGATTTGCATTGACTGGGAGTGCGGCAATGGCGAAGGTGGGACCAACGATAGGGCTCATTGACATTGGAGAATGTGATGACTCCTACCTGTTTCGTGTATCTCTTCCTGGAGTGAGAAGAGATGAAAGGGAATTCAGCTGTGAAGTTGAAAATGAGGGCCAAGTATTGATAAGAGGAGTGACGGTAACAGGCGAGAAGACAGTCCACAGGTACTCTCAGATGTTTGAAATGCAAACACAGAATCTTTGCCCTTCTGGGCAGTTTTCTATCTCGTTTCAGCTACCTGGTCCAGTTAATCCGCAGCAGTTTTCTGGTAATTTTGGGACGGATGGAATTCTGGAGGGAATTGTGATGAAACGAAAAGATGTCAGTAGTAAGTATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

340

Amino Acids

38.2

Weight (kDa)

5.72

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	238
Acc65I	GGTACC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	116
AciI	CCGC	3 cut(s)	223, 656, 932
AclWI	GGATC	2 cut(s)	34, 387
AcsI	RAATTY	2 cut(s)	764, 966
AfaI	GTAC	5 cut(s)	104, 118, 254, 337, 845
AfeI	AGCGCT	1 cut(s)	92
AfiI	CCNNNNNNNGG	5 cut(s)	16, 41, 126, 232, 683
AgsI	TTSAA	4 cut(s)	65, 418, 782, 860
AjnI	CCWGG	2 cut(s)	739, 916
AluBI	AGCT	4 cut(s)	179, 556, 771, 913
AluI	AGCT	4 cut(s)	179, 556, 771, 913
Alw26I	GTCTC	2 cut(s)	18, 398
AlwI	GGATC	2 cut(s)	34, 387
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	4 cut(s)	7, 128, 149, 790
ApeKI	GCWGC	4 cut(s)	548, 556, 620, 934
ApoI	RAATTY	2 cut(s)	764, 966
Asp718I	GGTACC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	5 cut(s)	8, 128, 674, 790, 920
AvaII	GGWCC	2 cut(s)	674, 920
AxyI	CCTNAGG	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	690
BbsI	GAAGAC	1 cut(s)	836
BbvI	GCAGC	4 cut(s)	535, 543, 607, 946
BccI	CCATC	5 cut(s)	67, 160, 566, 626, 956
BciT130I	CCWGG	2 cut(s)	741, 918
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	18, 398
BfaI	CTAG	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	238
BisI	GCNGC	5 cut(s)	549, 557, 621, 657, 935
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	5 cut(s)	550, 558, 622, 658, 936
Bme1390I	CCNGG	2 cut(s)	741, 918
Bme18I	GGWCC	2 cut(s)	674, 920
BmgT120I	GGNCC	5 cut(s)	8, 128, 674, 790, 920
BmiI	GGNNCC	4 cut(s)	118, 220, 606, 675
BmrFI	CCNGG	2 cut(s)	741, 918
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	2 cut(s)	340, 535
BmuI	ACTGGG	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	836
BpmI	CTGGAG	3 cut(s)	542, 762, 992
Bpu1102I	GCTNAGC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	322
BsaXI	ACNNNNNCTCC	4 cut(s)	596, 626, 801, 831
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 41, 126, 232, 683
Bse1I	ACTGG	5 cut(s)	313, 520, 525, 652, 923
Bse21I	CCTNAGG	1 cut(s)	40
Bse3DI	GCAATG	2 cut(s)	288, 666
BseBI	CCWGG	2 cut(s)	741, 918
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	3 cut(s)	10, 78, 967
BseLI	CCNNNNNNNGG	5 cut(s)	16, 41, 126, 232, 683
BseMI	GCAATG	2 cut(s)	288, 666
BseMII	CTCAG	5 cut(s)	29, 54, 171, 383, 863
BseNI	ACTGG	5 cut(s)	313, 520, 525, 652, 923
BseRI	GAGGAG	2 cut(s)	386, 822
BseXI	GCAGC	4 cut(s)	535, 543, 607, 946
BshFI	GGCC	4 cut(s)	9, 130, 151, 792
BshNI	GGYRCC	1 cut(s)	116
BslFI	GGGAC	2 cut(s)	687, 970
BslI	CCNNNNNNNGG	5 cut(s)	16, 41, 126, 232, 683
BsmAI	GTCTC	2 cut(s)	18, 398
BsmBI	CGTCTC	2 cut(s)	18, 398
BsmFI	GGGAC	2 cut(s)	687, 970
BsnI	GGCC	4 cut(s)	9, 130, 151, 792
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	4 cut(s)	26, 85, 133, 379
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	3 cut(s)	223, 656, 932
BspANI	GGCC	4 cut(s)	9, 130, 151, 792
BspCNI	CTCAG	5 cut(s)	28, 53, 172, 382, 862
BspLI	GGNNCC	4 cut(s)	118, 220, 606, 675
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	34, 387
BspT107I	GGYRCC	1 cut(s)	116
BsrDI	GCAATG	2 cut(s)	288, 666
BsrI	ACTGG	5 cut(s)	313, 520, 525, 652, 923
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	4 cut(s)	26, 85, 133, 379
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	2 cut(s)	741, 918
Bst4CI	ACNGT	4 cut(s)	414, 565, 817, 835
Bst6I	CTCTTC	2 cut(s)	741, 745
BstDEI	CTNAG	5 cut(s)	15, 40, 180, 369, 849
BstDSI	CCRYGG	1 cut(s)	322
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstF5I	GGATG	3 cut(s)	10, 78, 967
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	4 cut(s)	29, 88, 136, 382
BstMAI	GTCTC	2 cut(s)	18, 398
BstMBI	GATC	4 cut(s)	26, 85, 133, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	662
BstNI	CCWGG	2 cut(s)	741, 918
BstSCI	CCNGG	2 cut(s)	739, 916
BstV1I	GCAGC	4 cut(s)	535, 543, 607, 946
BstV2I	GAAGAC	1 cut(s)	836
BstX2I	RGATCY	2 cut(s)	26, 379
BstYI	RGATCY	2 cut(s)	26, 379
Bsu36I	CCTNAGG	1 cut(s)	40
BsuRI	GGCC	4 cut(s)	9, 130, 151, 792
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	3 cut(s)	10, 78, 967
BtsIMutI	CAGTG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	238
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	5 cut(s)	8, 128, 674, 790, 920
CsiI	ACCWGGT	1 cut(s)	916
Csp6I	GTAC	5 cut(s)	103, 117, 253, 336, 844
CviAII	CATG	1 cut(s)	323
CviQI	GTAC	5 cut(s)	103, 117, 253, 336, 844
DdeI	CTNAG	5 cut(s)	15, 40, 180, 369, 849
DpnI	GATC	4 cut(s)	28, 87, 135, 381
DpnII	GATC	4 cut(s)	26, 85, 133, 379
Eam1104I	CTCTTC	2 cut(s)	741, 745
EarI	CTCTTC	2 cut(s)	741, 745
Eco130I	CCWWGG	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	690
Eco32I	GATATC	2 cut(s)	433, 493
Eco47I	GGWCC	2 cut(s)	674, 920
Eco47III	AGCGCT	1 cut(s)	92
Eco81I	CCTNAGG	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoRI	GAATTC	2 cut(s)	764, 966
EcoRII	CCWGG	2 cut(s)	739, 916
EcoRV	GATATC	2 cut(s)	433, 493
EcoT14I	CCWWGG	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	322
Esp3I	CGTCTC	2 cut(s)	18, 398
FaeI	CATG	1 cut(s)	326
FaqI	GGGAC	2 cut(s)	687, 970
FatI	CATG	1 cut(s)	322
FauI	CCCGC	1 cut(s)	230
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	5 cut(s)	549, 557, 621, 657, 935
FokI	GGATG	3 cut(s)	17, 85, 974
FriOI	GRGCYC	1 cut(s)	690
Fsp4HI	GCNGC	5 cut(s)	549, 557, 621, 657, 935
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	5 cut(s)	549, 557, 621, 657, 935
GsuI	CTGGAG	3 cut(s)	542, 762, 992
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	4 cut(s)	9, 130, 151, 792
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	326
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	713, 874
Hpy166II	GTNNAC	3 cut(s)	253, 375, 838
Hpy188I	TCNGA	2 cut(s)	270, 852
Hpy188III	TCNNGA	3 cut(s)	536, 569, 971
Hpy8I	GTNNAC	3 cut(s)	253, 375, 838
HpyAV	CCTTC	3 cut(s)	265, 661, 894
HpyCH4III	ACNGT	4 cut(s)	414, 565, 817, 835
HpyCH4V	TGCA	5 cut(s)	169, 551, 559, 641, 865
HpyF10VI	GCNNNNNNNGC	1 cut(s)	662
HpyF3I	CTNAG	5 cut(s)	15, 40, 180, 369, 849
Hsp92II	CATG	1 cut(s)	326
HspAI	GCGC	1 cut(s)	91
KpnI	GGTACC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	26, 85, 133, 379
LmnI	GCTCC	3 cut(s)	224, 598, 604
Lsp1109I	GCAGC	4 cut(s)	535, 543, 607, 946
LweI	GCATC	2 cut(s)	340, 535
MabI	ACCWGGT	1 cut(s)	916
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	811, 817
MalI	GATC	4 cut(s)	28, 87, 135, 381
MboI	GATC	4 cut(s)	26, 85, 133, 379
MboII	GAAGA	7 cut(s)	257, 310, 359, 524, 728, 762, 841
MflI	RGATCY	2 cut(s)	26, 379
MhlI	GDGCHC	1 cut(s)	690
MluCI	AATT	7 cut(s)	58, 296, 361, 764, 949, 966, 978
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	576
MseI	TTAA	6 cut(s)	54, 138, 308, 480, 504, 927
MspA1I	CMGCKG	1 cut(s)	771
MspR9I	CCNGG	2 cut(s)	741, 918
MvaI	CCWGG	2 cut(s)	741, 918
MwoI	GCNNNNNNNGC	1 cut(s)	662
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	4 cut(s)	26, 85, 133, 379
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	4 cut(s)	118, 220, 606, 675
NmuCI	GTSAC	1 cut(s)	811
PaqCI	CACCTGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	874
PfoI	TCCNGGA	1 cut(s)	739
PkrI	GCNGC	5 cut(s)	550, 558, 622, 658, 936
PleI	GAGTC	1 cut(s)	707
PpsI	GAGTC	1 cut(s)	707
Psp6I	CCWGG	2 cut(s)	739, 916
PspGI	CCWGG	2 cut(s)	739, 916
PspN4I	GGNNCC	4 cut(s)	118, 220, 606, 675
PspPI	GGNCC	5 cut(s)	8, 128, 674, 790, 920
PsuI	RGATCY	2 cut(s)	26, 379
PvuII	CAGCTG	1 cut(s)	771
RsaI	GTAC	5 cut(s)	104, 118, 254, 337, 845
RsaNI	GTAC	5 cut(s)	103, 117, 253, 336, 844
SaqAI	TTAA	6 cut(s)	54, 138, 308, 480, 504, 927
SatI	GCNGC	5 cut(s)	549, 557, 621, 657, 935
Sau3AI	GATC	4 cut(s)	26, 85, 133, 379
Sau96I	GGNCC	5 cut(s)	8, 128, 674, 790, 920
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	2 cut(s)	741, 918
SduI	GDGCHC	1 cut(s)	690
SexAI	ACCWGGT	1 cut(s)	916
SfaNI	GCATC	2 cut(s)	340, 535
SinI	GGWCC	2 cut(s)	674, 920
Sse9I	AATT	7 cut(s)	58, 296, 361, 764, 949, 966, 978
SsiI	CCGC	3 cut(s)	223, 656, 932
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	739, 916
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	4 cut(s)	414, 565, 817, 835
TaqI	TCGA	1 cut(s)	495
TasI	AATT	7 cut(s)	58, 296, 361, 764, 949, 966, 978
TatI	WGTACW	2 cut(s)	102, 252
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	1 cut(s)	874
Tru1I	TTAA	6 cut(s)	54, 138, 308, 480, 504, 927
Tru9I	TTAA	6 cut(s)	54, 138, 308, 480, 504, 927
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	811
TseI	GCWGC	4 cut(s)	548, 556, 620, 934
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	4 cut(s)	97, 446, 771, 1001
TspGWI	ACGGA	3 cut(s)	323, 392, 974
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	674, 920
XagI	CCTNNNNNAGG	1 cut(s)	39
XapI	RAATTY	2 cut(s)	764, 966
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.