Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Reverse (-)

29275796 .. 29290787

Gene Structure 14992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG292100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGATGACTCATCTCAGGCTACAGAGTCTAATCCTAAGAATGAGCAAAGCGGGGTGGCAAATGATGATCAGCTGTTTCTCTTGTACTTCATAATGGGTACCTACTTTGGCCCTGATGTTAAAGGAGACAGGCCCCCTAAGTCAGTGTTGCAGAGAATAGCTGAGGGACTTCCACCATATACTTTTGAACAACTAGCTGGGTCCCAAATCAATACAGCGGAGGTGCAGCAGGTGTACTATTATGTTCTTAGGAAGGCTGATCAATCTGCCATTGTTAAATTACCTTTGTTGCACCAGTTCTTCCATGGTAATCTCCTCATCCAAGGACAAGATGACACAGCCAATTACCCTCAGTTTCCTGATCTCTTTCCTCCCCTACTTCACTACAATTCGCAGTCAAGAACCAGTTTTAACTTCTTTGAGAACATTGTACTTATCAGAAATCCGGAAATATATTACATTAAGCCAGAGGATATAGAAAGATTTAAGAGGCTAACTGGGCTTGAGGGTCTTGTTCTGGATAGAGATTCTGCGAGGTTGCATGCCATTACTGATGGAAGTACTTTATATGATATGACAGTCCATGAGCAGAAGTCTAATGGAGAATCACCTCCCATTAGATCATCTCAAAGCTCTACTGTAACAAAACATGTAGATGATCCTCTAGAATATAAGGATCCTCTGAATCAAGTGCATGTGGTGGCACCTACCAGTAGTGTGGAATATAATGGTACACCTGTCATGTACAGTTATATGGCTCCTTTGCCGACGGGAAATGGCTCTGATGTTACACAGAATGTTGATCCTGCTATGATTTTTCTTCCTTCTCCTCCAACTGAAAAAGAGTGGTCAAATATTGTAGCTGCAACCAAAAATGGATTTGCATTGACTGGGAGTGCGGCAACAGGACAGATAGGACCAACTATAGGACTCATTGACATTGGAGAGTCTGAGGACTCCTACCTGTTTCGTGTATCTCTTCCCGGAGTGAGAAGAGATGAAAGGGAATTCAGCTGTGAAGTTGAAAATGAAGGACAAGTATTGATAAGAGGGGTGACAATAACAGGTGAAAAGACAGTGTATAGTGCGAACTTGGCACGGGCTCAACAGGCACGGGCTCCGTCATTCGAGTTTAAAATGAGAGCTGCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

384

Amino Acids

42.7

Weight (kDa)

4.89

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	220
Acc36I	ACCTGC	1 cut(s)	220
Acc65I	GGTACC	1 cut(s)	98
AccB1I	GGYRCC	2 cut(s)	98, 703
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	3 cut(s)	51, 218, 899
AclWI	GGATC	4 cut(s)	653, 671, 684, 797
AcsI	RAATTY	1 cut(s)	1007
AfaI	GTAC	7 cut(s)	86, 100, 236, 432, 562, 733, 746
AfiI	CCNNNNNNNGG	1 cut(s)	926
AflIII	ACRYGT	1 cut(s)	649
AgsI	TTSAA	2 cut(s)	188, 1025
AluBI	AGCT	7 cut(s)	73, 161, 197, 633, 863, 1014, 1145
AluI	AGCT	7 cut(s)	73, 161, 197, 633, 863, 1014, 1145
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	4 cut(s)	653, 671, 684, 797
Aor13HI	TCCGGA	1 cut(s)	445
AoxI	GGCC	2 cut(s)	109, 131
ApeKI	GCWGC	3 cut(s)	226, 863, 1145
ApoI	RAATTY	1 cut(s)	1007
Asp718I	GGTACC	1 cut(s)	98
AspS9I	GGNCC	4 cut(s)	110, 132, 201, 917
AsuC2I	CCSGG	1 cut(s)	984
AsuHPI	GGTGA	3 cut(s)	600, 1066, 1079
AvaII	GGWCC	2 cut(s)	201, 917
BaeI	ACNNNNGTAYC	2 cut(s)	723, 756
BamHI	GGATCC	1 cut(s)	676
BanI	GGYRCC	2 cut(s)	98, 703
BanII	GRGCYC	2 cut(s)	1105, 1120
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	238, 850, 1132
BccI	CCATC	1 cut(s)	548
BclI	TGATCA	2 cut(s)	67, 259
BcnI	CCSGG	1 cut(s)	984
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	194, 665
BfmI	CTRYAG	2 cut(s)	21, 924
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	4 cut(s)	227, 864, 900, 1146
BlsI	GCNGC	4 cut(s)	228, 865, 901, 1147
BmcAI	AGTACT	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	984
Bme18I	GGWCC	2 cut(s)	201, 917
BmgT120I	GGNCC	4 cut(s)	110, 132, 201, 917
BmiI	GGNNCC	8 cut(s)	100, 134, 202, 203, 678, 705, 759, 1119
BmrFI	CCNGG	1 cut(s)	984
BmrI	ACTGGG	2 cut(s)	507, 900
BmuI	ACTGGG	2 cut(s)	507, 900
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	984
BsaJI	CCNNGG	2 cut(s)	304, 322
BsaWI	WCCGGW	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	926
Bse1I	ACTGG	5 cut(s)	295, 405, 502, 711, 895
BseAI	TCCGGA	1 cut(s)	445
BseDI	CCNNGG	2 cut(s)	304, 322
BseGI	GGATG	2 cut(s)	10, 318
BseLI	CCNNNNNNNGG	1 cut(s)	926
BseMII	CTCAG	4 cut(s)	29, 153, 365, 942
BseNI	ACTGG	5 cut(s)	295, 405, 502, 711, 895
BseRI	GAGGAG	2 cut(s)	305, 819
BseXI	GCAGC	3 cut(s)	238, 850, 1132
BseYI	CCCAGC	1 cut(s)	197
BsgI	GTGCAG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	111, 133
BshNI	GGYRCC	2 cut(s)	98, 703
BsiSI	CCGG	2 cut(s)	446, 984
BslFI	GGGAC	2 cut(s)	180, 187
BslI	CCNNNNNNNGG	1 cut(s)	926
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	2 cut(s)	180, 187
BsnI	GGCC	2 cut(s)	111, 133
Bsp1286I	GDGCHC	2 cut(s)	1105, 1120
Bsp13I	TCCGGA	1 cut(s)	445
Bsp1407I	TGTACA	1 cut(s)	744
Bsp143I	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	3 cut(s)	51, 218, 899
BspANI	GGCC	2 cut(s)	111, 133
BspCNI	CTCAG	4 cut(s)	28, 154, 364, 943
BspEI	TCCGGA	1 cut(s)	445
BspLI	GGNNCC	8 cut(s)	100, 134, 202, 203, 678, 705, 759, 1119
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	4 cut(s)	653, 671, 684, 797
BspT107I	GGYRCC	2 cut(s)	98, 703
BsrGI	TGTACA	1 cut(s)	744
BsrI	ACTGG	5 cut(s)	295, 405, 502, 711, 895
BssECI	CCNNGG	2 cut(s)	304, 322
BssMI	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
BssT1I	CCWWGG	2 cut(s)	304, 322
Bst4CI	ACNGT	4 cut(s)	580, 640, 749, 1078
Bst6I	CTCTTC	2 cut(s)	984, 988
BstAUI	TGTACA	1 cut(s)	744
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	7 cut(s)	15, 36, 138, 162, 248, 351, 951
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	10, 318
BstKTI	GATC	7 cut(s)	70, 262, 364, 623, 661, 679, 805
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	499, 1094, 1109
BstNSI	RCATGY	3 cut(s)	545, 653, 698
BstSCI	CCNGG	1 cut(s)	982
BstSFI	CTRYAG	2 cut(s)	21, 924
BstV1I	GCAGC	3 cut(s)	238, 850, 1132
BstX2I	RGATCY	1 cut(s)	676
BstXI	CCANNNNNNTGG	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	676
BsuRI	GGCC	2 cut(s)	111, 133
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	10, 318
BtsIMutI	CAGTG	2 cut(s)	150, 1083
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	543
Cfr13I	GGNCC	4 cut(s)	110, 132, 201, 917
Csp6I	GTAC	7 cut(s)	85, 99, 235, 431, 561, 732, 745
CviAII	CATG	6 cut(s)	305, 542, 584, 650, 695, 742
CviQI	GTAC	7 cut(s)	85, 99, 235, 431, 561, 732, 745
DdeI	CTNAG	7 cut(s)	15, 36, 138, 162, 248, 351, 951
DpnI	GATC	7 cut(s)	69, 261, 363, 622, 660, 678, 804
DpnII	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
DraI	TTTAAA	1 cut(s)	1135
Eam1104I	CTCTTC	2 cut(s)	984, 988
EarI	CTCTTC	2 cut(s)	984, 988
Eco130I	CCWWGG	2 cut(s)	304, 322
Eco24I	GRGCYC	2 cut(s)	1105, 1120
Eco47I	GGWCC	2 cut(s)	201, 917
EcoO109I	RGGNCCY	2 cut(s)	132, 201
EcoRI	GAATTC	1 cut(s)	1007
EcoT14I	CCWWGG	2 cut(s)	304, 322
EcoT38I	GRGCYC	2 cut(s)	1105, 1120
ErhI	CCWWGG	2 cut(s)	304, 322
FaeI	CATG	6 cut(s)	308, 545, 587, 653, 698, 745
FaqI	GGGAC	2 cut(s)	180, 187
FatI	CATG	6 cut(s)	304, 541, 583, 649, 694, 741
FauI	CCCGC	1 cut(s)	44
FbaI	TGATCA	2 cut(s)	67, 259
Fnu4HI	GCNGC	4 cut(s)	227, 864, 900, 1146
FokI	GGATG	2 cut(s)	17, 305
FriOI	GRGCYC	2 cut(s)	1105, 1120
Fsp4HI	GCNGC	4 cut(s)	227, 864, 900, 1146
FspBI	CTAG	2 cut(s)	194, 665
GluI	GCNGC	4 cut(s)	227, 864, 900, 1146
GsaI	CCCAGC	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	111, 133
HapII	CCGG	2 cut(s)	446, 984
Hin1II	CATG	6 cut(s)	308, 545, 587, 653, 698, 745
HinfI	GANTC	8 cut(s)	8, 26, 527, 605, 685, 930, 947, 956
HpaII	CCGG	2 cut(s)	446, 984
HphI	GGTGA	3 cut(s)	600, 1066, 1079
Hpy166II	GTNNAC	2 cut(s)	235, 734
Hpy188I	TCNGA	4 cut(s)	440, 684, 784, 952
Hpy188III	TCNNGA	5 cut(s)	359, 399, 446, 518, 665
Hpy8I	GTNNAC	2 cut(s)	235, 734
Hpy99I	CGWCG	1 cut(s)	772
HpyAV	CCTTC	3 cut(s)	247, 834, 1025
HpyCH4III	ACNGT	4 cut(s)	580, 640, 749, 1078
HpyCH4V	TGCA	8 cut(s)	151, 226, 292, 541, 694, 866, 884, 1148
HpyF10VI	GCNNNNNNNGC	3 cut(s)	499, 1094, 1109
HpyF3I	CTNAG	7 cut(s)	15, 36, 138, 162, 248, 351, 951
Hsp92II	CATG	6 cut(s)	308, 545, 587, 653, 698, 745
KflI	GGGWCCC	1 cut(s)	201
Kpn2I	TCCGGA	1 cut(s)	445
KpnI	GGTACC	1 cut(s)	102
Ksp22I	TGATCA	2 cut(s)	67, 259
Kzo9I	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
LmnI	GCTCC	2 cut(s)	763, 1123
Lsp1109I	GCAGC	3 cut(s)	238, 850, 1132
MaeI	CTAG	2 cut(s)	194, 665
MaeIII	GTNAC	3 cut(s)	640, 787, 1054
MalI	GATC	7 cut(s)	69, 261, 363, 622, 660, 678, 804
MboI	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
MboII	GAAGA	4 cut(s)	292, 812, 971, 1005
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	2 cut(s)	1105, 1120
MluCI	AATT	4 cut(s)	278, 343, 388, 1007
MlyI	GAGTC	5 cut(s)	2, 35, 924, 950, 956
MmeI	TCCRAC	1 cut(s)	857
MroI	TCCGGA	1 cut(s)	445
MseI	TTAA	6 cut(s)	120, 276, 411, 462, 486, 1134
MslI	CAYNNNNRTG	1 cut(s)	654
MspA1I	CMGCKG	3 cut(s)	73, 218, 1014
MspI	CCGG	2 cut(s)	446, 984
MspR9I	CCNGG	1 cut(s)	984
MwoI	GCNNNNNNNGC	3 cut(s)	499, 1094, 1109
NciI	CCSGG	1 cut(s)	984
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
NlaIII	CATG	6 cut(s)	308, 545, 587, 653, 698, 745
NlaIV	GGNNCC	8 cut(s)	100, 134, 202, 203, 678, 705, 759, 1119
NmuCI	GTSAC	1 cut(s)	1054
NspI	RCATGY	3 cut(s)	545, 653, 698
PaeI	GCATGC	1 cut(s)	545
PaqCI	CACCTGC	1 cut(s)	220
PciI	ACATGT	1 cut(s)	649
PfeI	GAWTC	3 cut(s)	527, 605, 685
PfoI	TCCNGGA	1 cut(s)	982
PkrI	GCNGC	4 cut(s)	228, 865, 901, 1147
PleI	GAGTC	5 cut(s)	2, 34, 924, 950, 955
PpsI	GAGTC	5 cut(s)	2, 34, 924, 950, 955
PpuMI	RGGWCCY	1 cut(s)	201
PscI	ACATGT	1 cut(s)	649
Psp5II	RGGWCCY	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	197
PspN4I	GGNNCC	8 cut(s)	100, 134, 202, 203, 678, 705, 759, 1119
PspPI	GGNCC	4 cut(s)	110, 132, 201, 917
PspPPI	RGGWCCY	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	676
PvuII	CAGCTG	2 cut(s)	73, 1014
RsaI	GTAC	7 cut(s)	86, 100, 236, 432, 562, 733, 746
RsaNI	GTAC	7 cut(s)	85, 99, 235, 431, 561, 732, 745
RseI	CAYNNNNRTG	1 cut(s)	654
SaqAI	TTAA	6 cut(s)	120, 276, 411, 462, 486, 1134
SatI	GCNGC	4 cut(s)	227, 864, 900, 1146
Sau3AI	GATC	7 cut(s)	67, 259, 361, 620, 658, 676, 802
Sau96I	GGNCC	4 cut(s)	110, 132, 201, 917
ScaI	AGTACT	1 cut(s)	562
SchI	GAGTC	5 cut(s)	2, 35, 924, 950, 956
ScrFI	CCNGG	1 cut(s)	984
SduI	GDGCHC	2 cut(s)	1105, 1120
SfcI	CTRYAG	2 cut(s)	21, 924
SinI	GGWCC	2 cut(s)	201, 917
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
SphI	GCATGC	1 cut(s)	545
Sse9I	AATT	4 cut(s)	278, 343, 388, 1007
SsiI	CCGC	3 cut(s)	51, 218, 899
SspI	AATATT	1 cut(s)	856
SspMI	CTAG	2 cut(s)	194, 665
StyD4I	CCNGG	1 cut(s)	982
StyI	CCWWGG	2 cut(s)	304, 322
TaaI	ACNGT	4 cut(s)	580, 640, 749, 1078
TaqI	TCGA	1 cut(s)	1128
TasI	AATT	4 cut(s)	278, 343, 388, 1007
TatI	WGTACW	5 cut(s)	84, 234, 430, 560, 744
TauI	GCSGC	1 cut(s)	902
TfiI	GAWTC	3 cut(s)	527, 605, 685
Tru1I	TTAA	6 cut(s)	120, 276, 411, 462, 486, 1134
Tru9I	TTAA	6 cut(s)	120, 276, 411, 462, 486, 1134
TscAI	CASTG	2 cut(s)	150, 1083
TseFI	GTSAC	1 cut(s)	1054
TseI	GCWGC	3 cut(s)	226, 863, 1145
Tsp45I	GTSAC	1 cut(s)	1054
TspDTI	ATGAA	3 cut(s)	79, 1014, 1044
TspGWI	ACGGA	1 cut(s)	1110
TspRI	CASTG	2 cut(s)	150, 1083
VpaK11BI	GGWCC	2 cut(s)	201, 917
XapI	RAATTY	1 cut(s)	1007
XbaI	TCTAGA	1 cut(s)	664
XceI	RCATGY	3 cut(s)	545, 653, 698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XspI	CTAG	2 cut(s)	194, 665
ZrmI	AGTACT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.