Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002492

Physical Location & Seq

Genomic Coordinates Forward (+)

18303608 .. 18304777

Gene Structure 1170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0206500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGAGTGAAGCAACCGCCATTGATGTTCCTGAGGCAAGCGGAGCAACCAGAGGAAAAGCACCTATTTTGACGGTTCCTAGGAAAGAGAAGGGAGGAATGAAAAGAGGGCTTGGAATTATCGACTTGGTTTTAAGGATAGGTGCAATGGTGGCTGCTCTAGCTGCTGCTGCCACCATGGGGACTAGTGATCAGAACCTTCCTTTCTTCACTCAGTTCTTCCAGTTTGAAGCTAGCTATGATGACATGCCCAGTTTCGAGTTTTTCTTGATAGCAATGTCACTTGTAGCTGGCTACCTGGTGCTATCTATCCCCTTCTCCATAGTAGCCATTATTCGCCCCCATGCTTCTGGACCAAGGCTCTTGCTCCTCATCATGGACACTGTGACGCTTACTCTAGCGACTGCTGCTGCTGCGGCTGCAACATCCATAGTCTACTTAGCACACAATGGCAATGCCAACTCGAATTGGCTCGCCATTTGCAACCAGTTTGGTGATTTCTGCCAGCAAATCAGTGCGGCTGTGGTGGCAGCCTTTATGACTGTTGTTACCTTCGTGTTCTTGATTCTGCTCTCTGCTTTGGCTCTCCGAAAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034641 GO:0035510 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043966 GO:0043971 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0051276 GO:0070988 GO:0071704 GO:0071840 GO:0080111 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

199

Amino Acids

21.13

Weight (kDa)

7.81

Isoelectric Point (pI)

22.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	36 - 183	2.9e-47	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54840 AT1G54840
fragaria_vesca	FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480 FvH4_6g24480
malus_domestica	MD12G1082200.v1.1
prunus_persica	Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1 Prupe.7G053900_v2.0.a1
pyrus_communis	pycom12g06800 pycom14g06590
rosa_chinensis	RchiOBHm_Chr3g0483521
rosa_laevigata	RLG00000023268 RLG00000023274
rosa_multiflora	Rmu_co8172902.1_g000001 Rmu_sc0038548.1_g000001 Rmu_sc0038549.1_g000001
rosa_roxburghii	Rroxscaffold_6G00398240
rosa_rugosa	Rorug03G0206400 Rorug03G0206500 Rorug03G0206600 Rorug03G0206700
rosa_samantha	Rh3AG254800 Rh3BG292100 Rh3CG289300 Rh3DG285200 Rh3DG285300 Rh3DG285400
rosa_wichuraiana	Rw3G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	4 cut(s)	18, 42, 416, 518
AfiI	CCNNNNNNNGG	2 cut(s)	180, 376
AgsI	TTSAA	1 cut(s)	230
AhlI	ACTAGT	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	4 cut(s)	164, 233, 237, 290
AluI	AGCT	4 cut(s)	164, 233, 237, 290
ApeKI	GCWGC	9 cut(s)	155, 164, 167, 170, 407, 410, 413, 419, 530
AspA2I	CCTAGG	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	506
AsuNHI	GCTAGC	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	353
AvrII	CCTAGG	1 cut(s)	80
AxyI	CCTNAGG	1 cut(s)	33
BbvI	GCAGC	9 cut(s)	142, 151, 154, 157, 394, 397, 400, 406, 542
BciT130I	CCWGG	1 cut(s)	299
BclI	TGATCA	1 cut(s)	190
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	5 cut(s)	81, 161, 186, 234, 398
BlnI	CCTAGG	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	299
BmrI	ACTGGG	1 cut(s)	246
BmtI	GCTAGC	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	246
BsaJI	CCNNGG	3 cut(s)	80, 177, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 376
Bse1I	ACTGG	3 cut(s)	223, 252, 487
Bse21I	CCTNAGG	1 cut(s)	33
Bse3DI	GCAATG	3 cut(s)	153, 282, 460
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	3 cut(s)	80, 177, 356
BseGI	GGATG	1 cut(s)	425
BseLI	CCNNNNNNNGG	2 cut(s)	180, 376
BseMI	GCAATG	3 cut(s)	153, 282, 460
BseMII	CTCAG	2 cut(s)	24, 227
BseNI	ACTGG	3 cut(s)	223, 252, 487
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	9 cut(s)	142, 151, 154, 157, 394, 397, 400, 406, 542
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	180, 376
BsmFI	GGGAC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	190
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	4 cut(s)	18, 42, 416, 518
BspCNI	CTCAG	2 cut(s)	25, 226
BspLI	GGNNCC	1 cut(s)	78
BspOI	GCTAGC	1 cut(s)	237
BsrDI	GCAATG	3 cut(s)	153, 282, 460
BsrI	ACTGG	3 cut(s)	223, 252, 487
BssECI	CCNNGG	3 cut(s)	80, 177, 356
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	3 cut(s)	80, 177, 356
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	3 cut(s)	76, 385, 544
BstC8I	GCNNGC	5 cut(s)	40, 235, 292, 474, 506
BstDEI	CTNAG	3 cut(s)	33, 213, 439
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	425
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	297
BstV1I	GCAGC	9 cut(s)	142, 151, 154, 157, 394, 397, 400, 406, 542
BstXI	CCANNNNNNTGG	1 cut(s)	350
Bsu36I	CCTNAGG	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	425
BtsIMutI	CAGTG	2 cut(s)	381, 520
Cac8I	GCNNGC	5 cut(s)	40, 235, 292, 474, 506
Cfr13I	GGNCC	1 cut(s)	353
CseI	GACGC	1 cut(s)	397
CsiI	ACCWGGT	1 cut(s)	297
CviAII	CATG	4 cut(s)	178, 247, 344, 376
DdeI	CTNAG	3 cut(s)	33, 213, 439
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eco130I	CCWWGG	3 cut(s)	80, 177, 356
Eco47I	GGWCC	1 cut(s)	353
Eco81I	CCTNAGG	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	3 cut(s)	80, 177, 356
ErhI	CCWWGG	3 cut(s)	80, 177, 356
FaeI	CATG	4 cut(s)	181, 250, 347, 379
FaiI	YATR	8 cut(s)	179, 240, 248, 323, 345, 377, 431, 539
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	4 cut(s)	177, 246, 343, 375
FbaI	TGATCA	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	435
FokI	GGATG	1 cut(s)	412
FspBI	CTAG	5 cut(s)	81, 161, 186, 234, 398
HgaI	GACGC	1 cut(s)	397
Hin1II	CATG	4 cut(s)	181, 250, 347, 379
HinfI	GANTC	1 cut(s)	565
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	2 cut(s)	195, 590
Hpy188III	TCNNGA	4 cut(s)	32, 268, 351, 562
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	4 cut(s)	85, 209, 325, 562
HpyCH4III	ACNGT	3 cut(s)	76, 385, 544
HpyCH4V	TGCA	3 cut(s)	146, 422, 483
HpyF3I	CTNAG	3 cut(s)	33, 213, 439
Hsp92II	CATG	4 cut(s)	181, 250, 347, 379
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	2 cut(s)	44, 372
Lsp1109I	GCAGC	9 cut(s)	142, 151, 154, 157, 394, 397, 400, 406, 542
MabI	ACCWGGT	1 cut(s)	297
MaeI	CTAG	5 cut(s)	81, 161, 186, 234, 398
MaeIII	GTNAC	3 cut(s)	279, 385, 547
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	3 cut(s)	16, 199, 211
MluCI	AATT	2 cut(s)	117, 466
MnlI	CCTC	5 cut(s)	28, 47, 89, 101, 380
MseI	TTAA	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	1 cut(s)	190
NheI	GCTAGC	1 cut(s)	233
NlaIII	CATG	4 cut(s)	181, 250, 347, 379
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	279, 385
NspI	RCATGY	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	134
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	299
SetI	ASST	9 cut(s)	67, 145, 166, 201, 235, 239, 292, 300, 554
SexAI	ACCWGGT	1 cut(s)	297
SinI	GGWCC	1 cut(s)	353
SpeI	ACTAGT	1 cut(s)	185
Sse9I	AATT	2 cut(s)	117, 466
SsiI	CCGC	4 cut(s)	18, 42, 416, 518
SspMI	CTAG	5 cut(s)	81, 161, 186, 234, 398
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	3 cut(s)	80, 177, 356
TaaI	ACNGT	3 cut(s)	76, 385, 544
TaqI	TCGA	3 cut(s)	123, 258, 464
TasI	AATT	2 cut(s)	117, 466
TauI	GCSGC	2 cut(s)	419, 521
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	2 cut(s)	388, 520
TseFI	GTSAC	2 cut(s)	279, 385
TseI	GCWGC	9 cut(s)	155, 164, 167, 170, 407, 410, 413, 419, 530
Tsp45I	GTSAC	2 cut(s)	279, 385
TspDTI	ATGAA	2 cut(s)	17, 116
TspRI	CASTG	2 cut(s)	388, 520
VpaK11BI	GGWCC	1 cut(s)	353
XceI	RCATGY	1 cut(s)	250
XmaJI	CCTAGG	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	5 cut(s)	81, 161, 186, 234, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.