RLG00000023268

Belongs to the small heat shock protein (HSP20) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
20926217 .. 20929307
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023268

Sequence Viewer

Length: 1296 bp
ATGCATAACCCAAATTCCATCAATCAACTCTCGTCGCTGCCCGTTATGGATGACTCATCTCAGGCTACAGAGTCTAATCCTACGAATGAGCAAAGCGGGGTGGCAAATGATGATCAGCTGTTTCTCTTGTACTTCATAATGGGTACCTACTTTGGCCCTGATGTTAAAGGAGACAGGCCCCCTAAGTCAGTGTTGCAGAGAATAGCTGAGGGACTTCCACCATATACTTTTGAACAACTAGCTGGGTCCCAAATCAATACAGCGGAGGTGCAGCAGGTGTACTATTATGTTCTTAGGAAGGCTGATCAATCTGCCATTGTTAAATTACCTTTGTTGCACCAGTTCTTCCATGGTAGTCTCCTCATCCAAGGACAAGATGACACAGCCAATTACCCTCAGTTTCCTGATCTCTTTCCTCCCCTACTTCACTACAATTCGCAGTCAAGAACCAGTTTTAAGTTCTTTGAGAACATTGTACTTATCAGAAATCCGGAAATATATTGCATTGAGCCAGAGGATATAGAAAGATTTAAGAGGCTAACTGGGCTTGAGGGTCTTGTTCTGGATAGAGATTCTGCGAGGTTGCATGCCATTACTGATGGAAGTACTTTTTATGATATGACAGTCCATGAGCAGAAGTCTAATGGAGAATCACCTCCCATTAGATCATCTCGAAGCGCTACTGTAACAAAACATGTAGATGATCCCCTAGAATATAAGGATCCTCTGAAACAAGTGCATGTGGTGGCACCTACCAGTAGTGTGGAATATAATGGTACACCTGTTATGTACAGTTATATGGCTCCTGTGCCGACGGGAAATGGCTCTGATGATGCACAGAATGTTGATCCTGCTATGATTTTTCTTCCTTCTCCTCCAACTGAAAAAGAGTGGTCAAATATTGTAGCTGCAACCAAAAATGGATTTGCATTGACTGGGAGTGCGGCAACAGGACAGATAGGACCAACTATAGGACTCATTGACATTGGAGAGTCTGAGGACTCCTACCTGTTTCATGTATCTCTTCCCGGAGTGAGAAGAGATGAAAGGGAATTCAGCTGTGAAGTTGAAAATGAAGGACAAGTATTGATAAGAGGGGTGACAATAACAGGTGAAAAGACAGTGTATAGGTACTCTCAGATGTTTGAGATGCAAACACAAAATCTTTGCCCTACTGGGCATTTTTCTATCTCATTCCAGCTGCCTGGTCCAGTTAATCCCCAGCAGTTTTCTGGTAATTTTGGCACTGACGGAATCCTTGAAGGAGTTGTGATGAAACGCTTAGATGTGAAATGA

Protein Analysis

432

Amino Acids

47.89

Weight (kDa)

4.83

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 265
Acc36I ACCTGC 1 cut(s) 265
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 2 cut(s) 143, 748
AccIII TCCGGA 1 cut(s) 490
AciI CCGC 3 cut(s) 96, 263, 944
AclWI GGATC 4 cut(s) 698, 716, 729, 842
AcsI RAATTY 2 cut(s) 13, 1052
AfaI GTAC 8 cut(s) 131, 145, 281, 477, 607, 778, 791, 1133
AfeI AGCGCT 1 cut(s) 679
AfiI CCNNNNNNNGG 1 cut(s) 971
AflIII ACRYGT 1 cut(s) 694
AgsI TTSAA 3 cut(s) 233, 1070, 1262
AjnI CCWGG 1 cut(s) 1204
AluBI AGCT 6 cut(s) 118, 206, 242, 908, 1059, 1201
AluI AGCT 6 cut(s) 118, 206, 242, 908, 1059, 1201
Alw26I GTCTC 2 cut(s) 165, 362
AlwI GGATC 4 cut(s) 698, 716, 729, 842
Aor13HI TCCGGA 1 cut(s) 490
Aor51HI AGCGCT 1 cut(s) 679
AoxI GGCC 2 cut(s) 154, 176
ApeKI GCWGC 4 cut(s) 37, 271, 908, 1201
ApoI RAATTY 2 cut(s) 13, 1052
Asp718I GGTACC 1 cut(s) 143
AspLEI GCGC 1 cut(s) 680
AspS9I GGNCC 5 cut(s) 155, 177, 246, 962, 1208
AsuC2I CCSGG 1 cut(s) 1029
AsuHPI GGTGA 3 cut(s) 645, 1111, 1124
AvaII GGWCC 3 cut(s) 246, 962, 1208
BaeI ACNNNNGTAYC 2 cut(s) 768, 801
BamHI GGATCC 1 cut(s) 721
BanI GGYRCC 2 cut(s) 143, 748
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 4 cut(s) 24, 283, 895, 1188
BccI CCATC 2 cut(s) 26, 593
BciT130I CCWGG 1 cut(s) 1206
BclI TGATCA 2 cut(s) 112, 304
BcnI CCSGG 1 cut(s) 1029
BcoDI GTCTC 2 cut(s) 165, 362
BfaI CTAG 2 cut(s) 239, 710
BfmI CTRYAG 2 cut(s) 66, 969
BfoI RGCGCY 1 cut(s) 681
BfuAI ACCTGC 1 cut(s) 265
BisI GCNGC 5 cut(s) 38, 272, 909, 945, 1202
BlsI GCNGC 5 cut(s) 39, 273, 910, 946, 1203
BmcAI AGTACT 1 cut(s) 607
Bme1390I CCNGG 2 cut(s) 1029, 1206
Bme18I GGWCC 3 cut(s) 246, 962, 1208
BmgT120I GGNCC 5 cut(s) 155, 177, 246, 962, 1208
BmiI GGNNCC 7 cut(s) 145, 179, 247, 248, 723, 750, 804
BmrFI CCNGG 2 cut(s) 1029, 1206
BmrI ACTGGG 3 cut(s) 552, 945, 1185
BmsI GCATC 2 cut(s) 823, 1140
BmuI ACTGGG 3 cut(s) 552, 945, 1185
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 1029
BsaJI CCNNGG 2 cut(s) 349, 367
BsaWI WCCGGW 1 cut(s) 490
Bsc4I CCNNNNNNNGG 1 cut(s) 971
Bse1I ACTGG 7 cut(s) 340, 450, 547, 756, 940, 1180, 1211
BseAI TCCGGA 1 cut(s) 490
BseBI CCWGG 1 cut(s) 1206
BseDI CCNNGG 2 cut(s) 349, 367
BseGI GGATG 2 cut(s) 55, 363
BseLI CCNNNNNNNGG 1 cut(s) 971
BseMII CTCAG 5 cut(s) 74, 198, 410, 987, 1151
BseNI ACTGG 7 cut(s) 340, 450, 547, 756, 940, 1180, 1211
BseRI GAGGAG 2 cut(s) 350, 864
BseXI GCAGC 4 cut(s) 24, 283, 895, 1188
BseYI CCCAGC 2 cut(s) 242, 1221
BsgI GTGCAG 1 cut(s) 290
BshFI GGCC 2 cut(s) 156, 178
BshNI GGYRCC 2 cut(s) 143, 748
BsiSI CCGG 2 cut(s) 491, 1029
BslFI GGGAC 2 cut(s) 225, 232
BslI CCNNNNNNNGG 1 cut(s) 971
BsmAI GTCTC 2 cut(s) 165, 362
BsmFI GGGAC 2 cut(s) 225, 232
BsnI GGCC 2 cut(s) 156, 178
Bsp13I TCCGGA 1 cut(s) 490
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 7 cut(s) 112, 304, 406, 665, 703, 721, 847
Bsp19I CCATGG 1 cut(s) 349
BspACI CCGC 3 cut(s) 96, 263, 944
BspANI GGCC 2 cut(s) 156, 178
BspCNI CTCAG 5 cut(s) 73, 199, 409, 988, 1150
BspEI TCCGGA 1 cut(s) 490
BspLI GGNNCC 7 cut(s) 145, 179, 247, 248, 723, 750, 804
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 4 cut(s) 698, 716, 729, 842
BspT107I GGYRCC 2 cut(s) 143, 748
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 7 cut(s) 340, 450, 547, 756, 940, 1180, 1211
BssECI CCNNGG 2 cut(s) 349, 367
BssMI GATC 7 cut(s) 112, 304, 406, 665, 703, 721, 847
BssT1I CCWWGG 2 cut(s) 349, 367
Bst2UI CCWGG 1 cut(s) 1206
Bst4CI ACNGT 4 cut(s) 625, 685, 794, 1123
Bst6I CTCTTC 2 cut(s) 1029, 1033
BstAUI TGTACA 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 588
BstDEI CTNAG 8 cut(s) 60, 183, 207, 293, 396, 996, 1137, 1282
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 2 cut(s) 55, 363
BstH2I RGCGCY 1 cut(s) 681
BstHHI GCGC 1 cut(s) 680
BstKTI GATC 7 cut(s) 115, 307, 409, 668, 706, 724, 850
BstMAI GTCTC 2 cut(s) 165, 362
BstMBI GATC 7 cut(s) 112, 304, 406, 665, 703, 721, 847
BstMWI GCNNNNNNNGC 1 cut(s) 544
BstNI CCWGG 1 cut(s) 1206
BstNSI RCATGY 3 cut(s) 590, 698, 743
BstSCI CCNGG 2 cut(s) 1027, 1204
BstSFI CTRYAG 2 cut(s) 66, 969
BstV1I GCAGC 4 cut(s) 24, 283, 895, 1188
BstX2I RGATCY 1 cut(s) 721
BstXI CCANNNNNNTGG 2 cut(s) 763, 1205
BstYI RGATCY 1 cut(s) 721
BsuRI GGCC 2 cut(s) 156, 178
BtgI CCRYGG 1 cut(s) 349
BtsCI GGATG 2 cut(s) 55, 363
BtsIMutI CAGTG 3 cut(s) 195, 1128, 1245
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 588
CfoI GCGC 1 cut(s) 680
Cfr13I GGNCC 5 cut(s) 155, 177, 246, 962, 1208
Csp6I GTAC 8 cut(s) 130, 144, 280, 476, 606, 777, 790, 1132
CviAII CATG 6 cut(s) 350, 587, 629, 695, 740, 1016
CviQI GTAC 8 cut(s) 130, 144, 280, 476, 606, 777, 790, 1132
DdeI CTNAG 8 cut(s) 60, 183, 207, 293, 396, 996, 1137, 1282
DpnI GATC 7 cut(s) 114, 306, 408, 667, 705, 723, 849
DpnII GATC 7 cut(s) 112, 304, 406, 665, 703, 721, 847
Eam1104I CTCTTC 2 cut(s) 1029, 1033
EarI CTCTTC 2 cut(s) 1029, 1033
Eco130I CCWWGG 2 cut(s) 349, 367
Eco47I GGWCC 3 cut(s) 246, 962, 1208
Eco47III AGCGCT 1 cut(s) 679
EcoO109I RGGNCCY 2 cut(s) 177, 246
EcoRI GAATTC 1 cut(s) 1052
EcoRII CCWGG 1 cut(s) 1204
EcoT14I CCWWGG 2 cut(s) 349, 367
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 349, 367
FaeI CATG 6 cut(s) 353, 590, 632, 698, 743, 1019
FaqI GGGAC 2 cut(s) 225, 232
FatI CATG 6 cut(s) 349, 586, 628, 694, 739, 1015
FauI CCCGC 1 cut(s) 89
FbaI TGATCA 2 cut(s) 112, 304
Fnu4HI GCNGC 5 cut(s) 38, 272, 909, 945, 1202
FokI GGATG 2 cut(s) 62, 350
Fsp4HI GCNGC 5 cut(s) 38, 272, 909, 945, 1202
FspBI CTAG 2 cut(s) 239, 710
GlaI GCGC 1 cut(s) 679
GluI GCNGC 5 cut(s) 38, 272, 909, 945, 1202
GsaI CCCAGC 2 cut(s) 246, 1225
HaeII RGCGCY 1 cut(s) 681
HaeIII GGCC 2 cut(s) 156, 178
HapII CCGG 2 cut(s) 491, 1029
HhaI GCGC 1 cut(s) 680
Hin1II CATG 6 cut(s) 353, 590, 632, 698, 743, 1019
Hin6I GCGC 1 cut(s) 678
HinP1I GCGC 1 cut(s) 678
HinfI GANTC 8 cut(s) 53, 71, 572, 650, 975, 992, 1001, 1254
HpaII CCGG 2 cut(s) 491, 1029
HphI GGTGA 3 cut(s) 645, 1111, 1124
Hpy166II GTNNAC 2 cut(s) 280, 779
Hpy188I TCNGA 5 cut(s) 485, 729, 829, 997, 1140
Hpy188III TCNNGA 5 cut(s) 404, 444, 491, 563, 672
Hpy8I GTNNAC 2 cut(s) 280, 779
Hpy99I CGWCG 2 cut(s) 37, 817
HpyAV CCTTC 4 cut(s) 292, 879, 1070, 1256
HpyCH4III ACNGT 4 cut(s) 625, 685, 794, 1123
HpyF10VI GCNNNNNNNGC 1 cut(s) 544
HpyF3I CTNAG 8 cut(s) 60, 183, 207, 293, 396, 996, 1137, 1282
Hsp92II CATG 6 cut(s) 353, 590, 632, 698, 743, 1019
HspAI GCGC 1 cut(s) 678
KflI GGGWCCC 1 cut(s) 246
Kpn2I TCCGGA 1 cut(s) 490
KpnI GGTACC 1 cut(s) 147
Ksp22I TGATCA 2 cut(s) 112, 304
Kzo9I GATC 7 cut(s) 112, 304, 406, 665, 703, 721, 847
LmnI GCTCC 1 cut(s) 808
Lsp1109I GCAGC 4 cut(s) 24, 283, 895, 1188
LweI GCATC 2 cut(s) 823, 1140
MaeI CTAG 2 cut(s) 239, 710
MaeIII GTNAC 2 cut(s) 685, 1099
MalI GATC 7 cut(s) 114, 306, 408, 667, 705, 723, 849
MboI GATC 7 cut(s) 112, 304, 406, 665, 703, 721, 847
MboII GAAGA 4 cut(s) 337, 857, 1016, 1050
MflI RGATCY 1 cut(s) 721
MluCI AATT 6 cut(s) 13, 323, 388, 433, 1052, 1237
MlyI GAGTC 5 cut(s) 47, 80, 969, 995, 1001
MmeI TCCRAC 1 cut(s) 902
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 490
MseI TTAA 5 cut(s) 165, 321, 456, 531, 1215
MslI CAYNNNNRTG 1 cut(s) 699
MspA1I CMGCKG 4 cut(s) 118, 263, 1059, 1201
MspI CCGG 2 cut(s) 491, 1029
MspR9I CCNGG 2 cut(s) 1029, 1206
MvaI CCWGG 1 cut(s) 1206
MwoI GCNNNNNNNGC 1 cut(s) 544
NciI CCSGG 1 cut(s) 1029
NcoI CCATGG 1 cut(s) 349
NdeII GATC 7 cut(s) 112, 304, 406, 665, 703, 721, 847
NlaIII CATG 6 cut(s) 353, 590, 632, 698, 743, 1019
NlaIV GGNNCC 7 cut(s) 145, 179, 247, 248, 723, 750, 804
NmuCI GTSAC 1 cut(s) 1099
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 590, 698, 743
PaeI GCATGC 1 cut(s) 590
PaqCI CACCTGC 1 cut(s) 265
PciI ACATGT 1 cut(s) 694
PfeI GAWTC 3 cut(s) 572, 650, 1254
PfoI TCCNGGA 1 cut(s) 1027
PkrI GCNGC 5 cut(s) 39, 273, 910, 946, 1203
PleI GAGTC 5 cut(s) 47, 79, 969, 995, 1000
PpsI GAGTC 5 cut(s) 47, 79, 969, 995, 1000
PpuMI RGGWCCY 1 cut(s) 246
PscI ACATGT 1 cut(s) 694
Psp5II RGGWCCY 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 1204
PspFI CCCAGC 2 cut(s) 242, 1221
PspGI CCWGG 1 cut(s) 1204
PspN4I GGNNCC 7 cut(s) 145, 179, 247, 248, 723, 750, 804
PspPI GGNCC 5 cut(s) 155, 177, 246, 962, 1208
PspPPI RGGWCCY 1 cut(s) 246
PsuI RGATCY 1 cut(s) 721
PvuII CAGCTG 3 cut(s) 118, 1059, 1201
RsaI GTAC 8 cut(s) 131, 145, 281, 477, 607, 778, 791, 1133
RsaNI GTAC 8 cut(s) 130, 144, 280, 476, 606, 777, 790, 1132
RseI CAYNNNNRTG 1 cut(s) 699
SaqAI TTAA 5 cut(s) 165, 321, 456, 531, 1215
SatI GCNGC 5 cut(s) 38, 272, 909, 945, 1202
Sau3AI GATC 7 cut(s) 112, 304, 406, 665, 703, 721, 847
Sau96I GGNCC 5 cut(s) 155, 177, 246, 962, 1208
ScaI AGTACT 1 cut(s) 607
SchI GAGTC 5 cut(s) 47, 80, 969, 995, 1001
ScrFI CCNGG 2 cut(s) 1029, 1206
SfaNI GCATC 2 cut(s) 823, 1140
SfcI CTRYAG 2 cut(s) 66, 969
SinI GGWCC 3 cut(s) 246, 962, 1208
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
SphI GCATGC 1 cut(s) 590
Sse9I AATT 6 cut(s) 13, 323, 388, 433, 1052, 1237
SsiI CCGC 3 cut(s) 96, 263, 944
SspI AATATT 1 cut(s) 901
SspMI CTAG 2 cut(s) 239, 710
StyD4I CCNGG 2 cut(s) 1027, 1204
StyI CCWWGG 2 cut(s) 349, 367
TaaI ACNGT 4 cut(s) 625, 685, 794, 1123
TaqI TCGA 1 cut(s) 673
TasI AATT 6 cut(s) 13, 323, 388, 433, 1052, 1237
TatI WGTACW 5 cut(s) 129, 279, 475, 605, 789
TauI GCSGC 1 cut(s) 947
TfiI GAWTC 3 cut(s) 572, 650, 1254
Tru1I TTAA 5 cut(s) 165, 321, 456, 531, 1215
Tru9I TTAA 5 cut(s) 165, 321, 456, 531, 1215
TscAI CASTG 3 cut(s) 195, 1128, 1252
TseFI GTSAC 1 cut(s) 1099
TseI GCWGC 4 cut(s) 37, 271, 908, 1201
Tsp45I GTSAC 1 cut(s) 1099
TspDTI ATGAA 5 cut(s) 124, 1004, 1059, 1089, 1289
TspGWI ACGGA 1 cut(s) 1266
TspRI CASTG 3 cut(s) 195, 1128, 1252
VpaK11BI GGWCC 3 cut(s) 246, 962, 1208
XapI RAATTY 2 cut(s) 13, 1052
XceI RCATGY 3 cut(s) 590, 698, 743
XcmI CCANNNNNNNNNTGG 2 cut(s) 347, 1229
XspI CTAG 2 cut(s) 239, 710
ZrmI AGTACT 1 cut(s) 607
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.