Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007163

Physical Location & Seq

Genomic Coordinates Forward (+)

20673768 .. 20676449

Gene Structure 2682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCTTTGGTTCATTACATGAATGTTTCACGTAGCACTTTTCCTTTGAGTAGATCTTCAAAGATTAATTTGAGCTCATCTTTTGCTTCTTTGCCACTTCAGTTTCATAAAAACATTAAGAGATTAGAATCCTCTGTTCCACCATCAGCTTCAGCTTCAGCTTCACCGGCGTTTCCTATTGATGTTGAGTATCTCCGGCGAGAGTTCTCCGGCCATGGAGCCACTTTCGAAGATATTGGTGAGACATGTATTGCTAGACTAAAACTGGACAATGGGAGTTCAGCGAATGTGATGTTGACACGTGGGATGATAACATCGTACAAAGTCCGAGTGTGGCACGGTGGCAAAGTGGAGCTTCTCCACACATGGGTCGAACAAGAGGAGGAAGAAGTAGTGATACGAGGAGGTGTTTCATCTGCATTTAGATCATCAGATTCTGATGAAATCAGTGACTGGAGACTCCAAGGGATCAGTGGTGATTCAAAGGATTGCGTTCAAATGGAGCTGAGAAGAAGTGACAAGAAGATCAAAGAGATTGAACTGAAACAGATTATTAGTCTGAGAGAAAACACACTGAGCATTGAGCTTTCTATGACAAACAAAGGCATTTCACCAATCAAGCTTGAAGGTTGTTCACTTGTAAGTTATTTGACAGTGAGTACACCAGAAGCTACATATGCAGTTGGACTGGAAGGTTCGGATTTTGTGGAAACGACTCCGTTTCTTCCTCGTTTCGGGGTGGTTCAAGGCGAGAAGGAAGAAGAAAAACCCGGGTTTGGTGGGGAAGAAGAGAGCAACTACAAACAGTTGAATAGAGAGATGAGTAGGATATACACATGTGCTCCAAAGAGCTTCACTGTCATTGATAGGGTAGTAATACTTACTAAACTTCAATTATATTTAAATTTTCTCTGTGGATTCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015979 GO:0016020 GO:0019222 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0055114 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

34.38

Weight (kDa)

5.87

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55370 AT1G55370
fragaria_vesca	FvH4_1g28070 FvH4_1g28070 FvH4_4g18560 FvH4_4g18560
malus_domestica	MD14G1002400.v1.1
prunus_persica	Prupe.7G003600_v2.0.a1
pyrus_communis	pycom49g00190
rosa_chinensis	RchiOBHm_Chr3g0497181
rosa_laevigata	RLG00000000831 RLG00000022473
rosa_multiflora	Rmu_sc0002276.1_g000005 Rmu_sc0002893.1_g000013 Rmu_sc0007568.1_g000002 Rmu_ssc0000474.1_g000020
rosa_roxburghii	Rroxscaffold_6G00388300
rosa_rugosa	Rorug03G0291600
rosa_samantha	Rh3AG334900 Rh3BG372600 Rh3CG369000 Rh3DG369900 Rh7CG503300 Rh7DG471700
rosa_wichuraiana	Rw3G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	476
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	904
AcuI	CTGAAG	3 cut(s)	83, 135, 141
AcvI	CACGTG	1 cut(s)	302
AfaI	GTAC	2 cut(s)	320, 661
AfiI	CCNNNNNNNGG	3 cut(s)	367, 734, 776
AflIII	ACRYGT	3 cut(s)	245, 299, 836
AgsI	TTSAA	8 cut(s)	60, 483, 497, 539, 626, 746, 811, 893
Alw21I	GWGCWC	2 cut(s)	77, 844
Alw26I	GTCTC	2 cut(s)	236, 451
AlwI	GGATC	1 cut(s)	476
AlwNI	CAGNNNCTG	2 cut(s)	437, 453
Ama87I	CYCGRG	1 cut(s)	770
AoxI	GGCC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	904
AseI	ATTAAT	1 cut(s)	66
AsuC2I	CCSGG	2 cut(s)	771, 772
AsuHPI	GGTGA	4 cut(s)	156, 251, 488, 603
AsuII	TTCGAA	1 cut(s)	228
AvaI	CYCGRG	1 cut(s)	770
BanII	GRGCYC	1 cut(s)	77
BarI	GAAGNNNNNNTAC	2 cut(s)	381, 413
BbrPI	CACGTG	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	77, 844
BccI	CCATC	1 cut(s)	151
BcnI	CCSGG	2 cut(s)	771, 772
BcoDI	GTCTC	2 cut(s)	236, 451
BfaI	CTAG	1 cut(s)	255
BglII	AGATCT	1 cut(s)	53
Bme1390I	CCNGG	2 cut(s)	771, 772
BmeT110I	CYCGRG	1 cut(s)	770
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	2 cut(s)	771, 772
BpmI	CTGGAG	1 cut(s)	475
Bpu14I	TTCGAA	1 cut(s)	228
BpuMI	CCSGG	2 cut(s)	771, 772
BsaAI	YACGTR	2 cut(s)	32, 302
BsaBI	GATNNNNATC	1 cut(s)	127
BsaJI	CCNNGG	3 cut(s)	214, 463, 770
BsaXI	ACNNNNNCTCC	2 cut(s)	826, 856
Bsc4I	CCNNNNNNNGG	3 cut(s)	367, 734, 776
Bse118I	RCCGGY	1 cut(s)	166
Bse1I	ACTGG	3 cut(s)	270, 458, 693
Bse8I	GATNNNNATC	1 cut(s)	127
BseDI	CCNNGG	3 cut(s)	214, 463, 770
BseGI	GGATG	1 cut(s)	312
BseJI	GATNNNNATC	1 cut(s)	127
BseLI	CCNNNNNNNGG	3 cut(s)	367, 734, 776
BseMII	CTCAG	3 cut(s)	497, 551, 566
BseNI	ACTGG	3 cut(s)	270, 458, 693
BseRI	GAGGAG	2 cut(s)	395, 417
BshFI	GGCC	1 cut(s)	213
BsiHKAI	GWGCWC	2 cut(s)	77, 844
BsiHKCI	CYCGRG	1 cut(s)	770
BsiSI	CCGG	4 cut(s)	167, 196, 210, 771
BslI	CCNNNNNNNGG	3 cut(s)	367, 734, 776
BsmAI	GTCTC	2 cut(s)	236, 451
BsnI	GGCC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	770
Bsp119I	TTCGAA	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	77, 844
Bsp143I	GATC	4 cut(s)	53, 425, 468, 525
Bsp19I	CCATGG	1 cut(s)	214
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	3 cut(s)	498, 552, 567
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	476
BspT104I	TTCGAA	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	166
BsrI	ACTGG	3 cut(s)	270, 458, 693
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	214, 463, 770
BssMI	GATC	4 cut(s)	53, 425, 468, 525
BssT1I	CCWWGG	2 cut(s)	214, 463
Bst4CI	ACNGT	4 cut(s)	341, 655, 807, 859
Bst6I	CTCTTC	1 cut(s)	783
BstBAI	YACGTR	2 cut(s)	32, 302
BstBI	TTCGAA	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	506, 560, 575
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	312
BstKTI	GATC	4 cut(s)	56, 428, 471, 528
BstMAI	GTCTC	2 cut(s)	236, 451
BstMBI	GATC	4 cut(s)	53, 425, 468, 525
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 677
BstNSI	RCATGY	2 cut(s)	249, 840
BstSCI	CCNGG	2 cut(s)	769, 770
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	312
BtsIMutI	CAGTG	5 cut(s)	454, 478, 572, 660, 855
CaiI	CAGNNNCTG	2 cut(s)	437, 453
Cfr10I	RCCGGY	1 cut(s)	166
Cfr9I	CCCGGG	1 cut(s)	770
Csp6I	GTAC	2 cut(s)	319, 660
CviAII	CATG	5 cut(s)	19, 215, 246, 366, 837
CviQI	GTAC	2 cut(s)	319, 660
DdeI	CTNAG	3 cut(s)	506, 560, 575
DpnI	GATC	4 cut(s)	55, 427, 470, 527
DpnII	GATC	4 cut(s)	53, 425, 468, 525
DraI	TTTAAA	1 cut(s)	903
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	783
EarI	CTCTTC	1 cut(s)	783
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	2 cut(s)	214, 463
Eco24I	GRGCYC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	3 cut(s)	83, 135, 141
Eco72I	CACGTG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	770
EcoICRI	GAGCTC	1 cut(s)	75
EcoT14I	CCWWGG	2 cut(s)	214, 463
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	2 cut(s)	214, 463
FaeI	CATG	5 cut(s)	22, 218, 249, 369, 840
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FatI	CATG	5 cut(s)	18, 214, 245, 365, 836
FauNDI	CATATG	2 cut(s)	676, 923
FokI	GGATG	1 cut(s)	319
FriOI	GRGCYC	1 cut(s)	77
FspBI	CTAG	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	475
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	4 cut(s)	167, 196, 210, 771
Hin1II	CATG	5 cut(s)	22, 218, 249, 369, 840
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	6 cut(s)	128, 434, 459, 479, 715, 918
HpaII	CCGG	4 cut(s)	167, 196, 210, 771
HphI	GGTGA	4 cut(s)	156, 251, 488, 603
Hpy166II	GTNNAC	3 cut(s)	297, 635, 662
Hpy188I	TCNGA	5 cut(s)	329, 433, 439, 561, 700
Hpy8I	GTNNAC	3 cut(s)	297, 635, 662
HpyAV	CCTTC	3 cut(s)	620, 686, 748
HpyCH4III	ACNGT	4 cut(s)	341, 655, 807, 859
HpyCH4IV	ACGT	2 cut(s)	31, 301
HpyCH4V	TGCA	2 cut(s)	419, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 677
HpyF3I	CTNAG	3 cut(s)	506, 560, 575
HpySE526I	ACGT	2 cut(s)	31, 301
Hsp92II	CATG	5 cut(s)	22, 218, 249, 369, 840
Kzo9I	GATC	4 cut(s)	53, 425, 468, 525
LmnI	GCTCC	4 cut(s)	218, 352, 502, 847
LpnPI	CCDG	8 cut(s)	180, 209, 223, 251, 439, 674, 678, 784
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	2 cut(s)	31, 301
MaeIII	GTNAC	2 cut(s)	449, 515
MalI	GATC	4 cut(s)	55, 427, 470, 527
MboI	GATC	4 cut(s)	53, 425, 468, 525
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	2 cut(s)	77, 844
MluCI	AATT	3 cut(s)	67, 893, 904
MlyI	GAGTC	2 cut(s)	453, 709
MmeI	TCCRAC	1 cut(s)	664
MnlI	CCTC	6 cut(s)	142, 373, 376, 395, 398, 738
MseI	TTAA	3 cut(s)	66, 117, 902
MspI	CCGG	4 cut(s)	167, 196, 210, 771
MspR9I	CCNGG	2 cut(s)	771, 772
MwoI	GCNNNNNNNGC	2 cut(s)	167, 677
NciI	CCSGG	2 cut(s)	771, 772
NcoI	CCATGG	1 cut(s)	214
NdeI	CATATG	2 cut(s)	676, 923
NdeII	GATC	4 cut(s)	53, 425, 468, 525
NlaIII	CATG	5 cut(s)	22, 218, 249, 369, 840
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	449, 515
NspI	RCATGY	2 cut(s)	249, 840
NspV	TTCGAA	1 cut(s)	228
PciI	ACATGT	2 cut(s)	245, 836
PfeI	GAWTC	4 cut(s)	128, 434, 479, 918
PleI	GAGTC	2 cut(s)	453, 709
PmaCI	CACGTG	1 cut(s)	302
PmlI	CACGTG	1 cut(s)	302
PpsI	GAGTC	2 cut(s)	453, 709
Ppu21I	YACGTR	2 cut(s)	32, 302
PscI	ACATGT	2 cut(s)	245, 836
PshBI	ATTAAT	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	77
PspCI	CACGTG	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	220
PstNI	CAGNNNCTG	2 cut(s)	437, 453
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	2 cut(s)	320, 661
RsaNI	GTAC	2 cut(s)	319, 660
SacI	GAGCTC	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	66, 117, 902
Sau3AI	GATC	4 cut(s)	53, 425, 468, 525
SchI	GAGTC	2 cut(s)	453, 709
ScrFI	CCNGG	2 cut(s)	771, 772
SduI	GDGCHC	2 cut(s)	77, 844
SfuI	TTCGAA	1 cut(s)	228
SgrAI	CRCCGGYG	1 cut(s)	166
SmaI	CCCGGG	1 cut(s)	772
SmiI	ATTTAAAT	1 cut(s)	903
Sse9I	AATT	3 cut(s)	67, 893, 904
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	769, 770
StyI	CCWWGG	2 cut(s)	214, 463
SwaI	ATTTAAAT	1 cut(s)	903
TaaI	ACNGT	4 cut(s)	341, 655, 807, 859
TaiI	ACGT	2 cut(s)	34, 304
TaqI	TCGA	2 cut(s)	228, 372
TasI	AATT	3 cut(s)	67, 893, 904
TatI	WGTACW	1 cut(s)	659
TfiI	GAWTC	4 cut(s)	128, 434, 479, 918
Tru1I	TTAA	3 cut(s)	66, 117, 902
Tru9I	TTAA	3 cut(s)	66, 117, 902
TscAI	CASTG	5 cut(s)	454, 478, 579, 660, 862
TseFI	GTSAC	2 cut(s)	449, 515
Tsp45I	GTSAC	2 cut(s)	449, 515
TspDTI	ATGAA	5 cut(s)	35, 95, 402, 456, 910
TspGWI	ACGGA	1 cut(s)	708
TspMI	CCCGGG	1 cut(s)	770
TspRI	CASTG	5 cut(s)	454, 478, 579, 660, 862
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	1 cut(s)	904
XceI	RCATGY	2 cut(s)	249, 840
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XmaI	CCCGGG	1 cut(s)	770
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.