Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_49

Orthogroup ID

OG0007163

Physical Location & Seq

Genomic Coordinates Reverse (-)

212801 .. 214555

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom49g00190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAGTAGCATGGCGGCTTTCAGTCCATTTTTGTCACCCAACAGTTTCACTCCTCTCTCTGGTACTGCTAAACACACAGACTACCATTCATCTTCTTCTTGTTTGAGTAGGTTGCTGCAGCAGCACTTGTACAAAACTACTACCACTAGTACTAGTAACAACAGCAAGAAGAGAGAATTCCCAGTTGCATCAGTGGCCGCTTCAAGTTCAATTTCATTCCCCTACCAACCACCTGTCAACGTGGACTACTTGGAGCAAGAGTTCAGCGGCCATGGAGTAGTATTCAAGGCCATTGGCGACAGCTGTGTGGCTAAGATGGAACTGGACAATGGAAGTAAAGCCATCATGATGCTCCCAAGTGGCCTTATCACCTCCTACAAGGCTTCCATGTGGCATGGCGGCACTGTCGAGCTGCTGCAGTCTTCAGTCTCCGAGTCGGAGGATAATGGTGCCGGCGGTGCCGCTGCCGCCATAGCCATTCAAGGAGGGGTGTCTTTAGCCTTTGACTGTTCGCGTGAGGTGGGTCAGCAAGTTCCTTGGTCGCCGACGAACTGGGCTCTTCATCAAATTACAGGAAATCCTCAGGATCACATTCAGGTAGAACTGATTAGCACAGATTCAGAGGACATGGTTGAAATCAAATACATTATAACTCTCAAACAAGATGTCTTAATCTCAGAGATTGTACTCTCTAACTCTACATCTTCGTCTCTCCAACTAACCGGCTCTATTTTAAGTCATCTGACAGTAAGCTCACCGGATGCAACTTATGCTATTGGTTTGGAAAGATCAGATTTCTTTACCAGGTTGCCAATTTTGTCAAGTTTTGGTATCATTCCTCCCGACTTTGGCATGAAAAATGAAGCTCAGATCAGCAAACTATGGCAGCAAATGGCTGGCTGGAGCCCAAATAATCAAAATGATGGCAAACAAGCAGATACAAATCAGAGAGGAAATAATGAAGAAGAAATGGAGGGTGAAGAAGATGACAACTATAAGCATTTAAGAGAGCAAATGAGCCGAATATACACCAGTGCCCCTACCGACTTCACAATCATTGACAGGGGTAGAAGAAACTCAGTGGTAGTAGGAAGAGATGGGTTTGATGAACTATACATGTTCAGTCCTGGCTCGAGCCATGAAGACTATGGCAAGTATGCTTATATATGTGTTGGCCAATCTGCCGTGCTAAAACCAATAATTGTGCGTCCTAATGAATCGTGGAGGGGCGGACAGCGCTTATACAACCCCAATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015979 GO:0016020 GO:0019222 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0055114 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

420

Amino Acids

45.9

Weight (kDa)

5.1

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55370 AT1G55370
fragaria_vesca	FvH4_1g28070 FvH4_1g28070 FvH4_4g18560 FvH4_4g18560
malus_domestica	MD14G1002400.v1.1
prunus_persica	Prupe.7G003600_v2.0.a1
pyrus_communis	pycom49g00190
rosa_chinensis	RchiOBHm_Chr3g0497181
rosa_laevigata	RLG00000000831 RLG00000022473
rosa_multiflora	Rmu_sc0002276.1_g000005 Rmu_sc0002893.1_g000013 Rmu_sc0007568.1_g000002 Rmu_ssc0000474.1_g000020
rosa_roxburghii	Rroxscaffold_6G00388300
rosa_rugosa	Rorug03G0291600
rosa_samantha	Rh3AG334900 Rh3BG372600 Rh3CG369000 Rh3DG369900 Rh7CG503300 Rh7DG471700
rosa_wichuraiana	Rw3G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
AccB1I	GGYRCC	2 cut(s)	449, 458
AccII	CGCG	1 cut(s)	514
AciI	CCGC	8 cut(s)	14, 198, 267, 399, 456, 462, 468, 1230
AclWI	GGATC	1 cut(s)	594
AcoI	YGGCCR	3 cut(s)	195, 268, 1174
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	4 cut(s)	64, 131, 151, 687
AfeI	AGCGCT	1 cut(s)	1238
AfiI	CCNNNNNNNGG	2 cut(s)	59, 848
AflIII	ACRYGT	1 cut(s)	1116
AgsI	TTSAA	5 cut(s)	204, 210, 286, 482, 635
AhlI	ACTAGT	2 cut(s)	146, 152
AjnI	CCWGG	2 cut(s)	803, 1126
AloI	GAACNNNNNNTCC	2 cut(s)	245, 277
AluBI	AGCT	4 cut(s)	303, 412, 753, 866
AluI	AGCT	4 cut(s)	303, 412, 753, 866
Alw26I	GTCTC	2 cut(s)	433, 714
AlwI	GGATC	1 cut(s)	594
Ama87I	CYCGRG	1 cut(s)	1132
Aor51HI	AGCGCT	1 cut(s)	1238
AoxI	GGCC	5 cut(s)	195, 268, 288, 361, 1174
ApeKI	GCWGC	7 cut(s)	115, 118, 121, 412, 415, 464, 886
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	651, 683
AspLEI	GCGC	1 cut(s)	1239
AsuHPI	GGTGA	4 cut(s)	27, 361, 747, 989
AvaI	CYCGRG	1 cut(s)	1132
AxyI	CCTNAGG	1 cut(s)	582
BaeGI	GKGCMC	1 cut(s)	1039
BalI	TGGCCA	1 cut(s)	1176
BanI	GGYRCC	2 cut(s)	449, 458
BanII	GRGCYC	2 cut(s)	559, 908
BbsI	GAAGAC	2 cut(s)	414, 1149
BbvI	GCAGC	7 cut(s)	102, 130, 133, 399, 402, 451, 898
BccI	CCATC	4 cut(s)	310, 350, 917, 1091
BceAI	ACGGC	1 cut(s)	1169
BciT130I	CCWGG	2 cut(s)	805, 1128
BcoDI	GTCTC	2 cut(s)	433, 714
BcuI	ACTAGT	2 cut(s)	146, 152
BfaI	CTAG	2 cut(s)	147, 153
BfmI	CTRYAG	2 cut(s)	116, 416
BfoI	RGCGCY	1 cut(s)	1240
BmcAI	AGTACT	1 cut(s)	151
Bme1390I	CCNGG	2 cut(s)	805, 1128
BmeT110I	CYCGRG	1 cut(s)	1132
BmiI	GGNNCC	3 cut(s)	451, 460, 905
BmrFI	CCNGG	2 cut(s)	805, 1128
BmrI	ACTGGG	2 cut(s)	176, 562
BmsI	GCATC	3 cut(s)	197, 339, 751
BmuI	ACTGGG	2 cut(s)	176, 562
BpiI	GAAGAC	2 cut(s)	414, 1149
BpmI	CTGGAG	1 cut(s)	922
BsaBI	GATNNNNATC	1 cut(s)	942
BsaJI	CCNNGG	2 cut(s)	271, 536
BsaWI	WCCGGW	1 cut(s)	757
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 848
Bse118I	RCCGGY	2 cut(s)	452, 722
Bse1I	ACTGG	4 cut(s)	182, 327, 557, 1032
Bse21I	CCTNAGG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	942
BseBI	CCWGG	2 cut(s)	805, 1128
BseDI	CCNNGG	2 cut(s)	271, 536
BseGI	GGATG	1 cut(s)	766
BseJI	GATNNNNATC	1 cut(s)	942
BseLI	CCNNNNNNNGG	2 cut(s)	59, 848
BseMII	CTCAG	4 cut(s)	596, 690, 881, 1092
BseNI	ACTGG	4 cut(s)	182, 327, 557, 1032
BseRI	GAGGAG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	1039
BseXI	GCAGC	7 cut(s)	102, 130, 133, 399, 402, 451, 898
Bsh1236I	CGCG	1 cut(s)	514
BshFI	GGCC	5 cut(s)	197, 270, 290, 363, 1176
BshNI	GGYRCC	2 cut(s)	449, 458
BsiHKCI	CYCGRG	1 cut(s)	1132
BsiSI	CCGG	3 cut(s)	453, 723, 758
BslI	CCNNNNNNNGG	2 cut(s)	59, 848
BsmAI	GTCTC	2 cut(s)	433, 714
BsmBI	CGTCTC	1 cut(s)	714
BsnI	GGCC	5 cut(s)	197, 270, 290, 363, 1176
BsoBI	CYCGRG	1 cut(s)	1132
Bsp1286I	GDGCHC	3 cut(s)	559, 908, 1039
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	586, 788, 870
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	8 cut(s)	14, 198, 267, 399, 456, 462, 468, 1230
BspANI	GGCC	5 cut(s)	197, 270, 290, 363, 1176
BspCNI	CTCAG	4 cut(s)	595, 689, 880, 1091
BspFNI	CGCG	1 cut(s)	514
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	451, 460, 905
BspMAI	CTGCAG	2 cut(s)	120, 420
BspPI	GGATC	1 cut(s)	594
BspQI	GCTCTTC	1 cut(s)	564
BspT107I	GGYRCC	2 cut(s)	449, 458
BsrFI	RCCGGY	2 cut(s)	452, 722
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	4 cut(s)	182, 327, 557, 1032
BssAI	RCCGGY	2 cut(s)	452, 722
BssECI	CCNNGG	2 cut(s)	271, 536
BssMI	GATC	3 cut(s)	586, 788, 870
BssT1I	CCWWGG	2 cut(s)	271, 536
Bst2UI	CCWGG	2 cut(s)	805, 1128
Bst4CI	ACNGT	4 cut(s)	44, 406, 509, 748
Bst6I	CTCTTC	3 cut(s)	164, 564, 1087
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	454, 898
BstDEI	CTNAG	5 cut(s)	312, 582, 676, 867, 1078
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	766
BstFNI	CGCG	1 cut(s)	514
BstH2I	RGCGCY	1 cut(s)	1240
BstHHI	GCGC	1 cut(s)	1239
BstKTI	GATC	3 cut(s)	589, 791, 873
BstMAI	GTCTC	2 cut(s)	433, 714
BstMBI	GATC	3 cut(s)	586, 788, 870
BstMWI	GCNNNNNNNGC	7 cut(s)	121, 194, 458, 467, 473, 770, 1236
BstNI	CCWGG	2 cut(s)	805, 1128
BstNSI	RCATGY	1 cut(s)	1120
BstSCI	CCNGG	2 cut(s)	803, 1126
BstSFI	CTRYAG	2 cut(s)	116, 416
BstSLI	GKGCMC	1 cut(s)	1039
BstUI	CGCG	1 cut(s)	514
BstV1I	GCAGC	7 cut(s)	102, 130, 133, 399, 402, 451, 898
BstV2I	GAAGAC	2 cut(s)	414, 1149
Bsu36I	CCTNAGG	1 cut(s)	582
BsuRI	GGCC	5 cut(s)	197, 270, 290, 363, 1176
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	766
BtsIMutI	CAGTG	4 cut(s)	198, 402, 1039, 1086
Cac8I	GCNNGC	2 cut(s)	454, 898
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	1 cut(s)	1239
Cfr10I	RCCGGY	2 cut(s)	452, 722
CseI	GACGC	1 cut(s)	1196
CsiI	ACCWGGT	1 cut(s)	803
Csp6I	GTAC	4 cut(s)	63, 130, 150, 686
CviAII	CATG	9 cut(s)	10, 272, 346, 388, 395, 628, 853, 1117, 1139
CviQI	GTAC	4 cut(s)	63, 130, 150, 686
DdeI	CTNAG	5 cut(s)	312, 582, 676, 867, 1078
DpnI	GATC	3 cut(s)	588, 790, 872
DpnII	GATC	3 cut(s)	586, 788, 870
EaeI	YGGCCR	3 cut(s)	195, 268, 1174
Eam1104I	CTCTTC	3 cut(s)	164, 564, 1087
EarI	CTCTTC	3 cut(s)	164, 564, 1087
EciI	GGCGGA	1 cut(s)	1245
Eco130I	CCWWGG	2 cut(s)	271, 536
Eco24I	GRGCYC	2 cut(s)	559, 908
Eco47III	AGCGCT	1 cut(s)	1238
Eco57I	CTGAAG	1 cut(s)	408
Eco81I	CCTNAGG	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	1132
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	2 cut(s)	803, 1126
EcoT14I	CCWWGG	2 cut(s)	271, 536
EcoT38I	GRGCYC	2 cut(s)	559, 908
ErhI	CCWWGG	2 cut(s)	271, 536
Esp3I	CGTCTC	1 cut(s)	714
FaeI	CATG	9 cut(s)	13, 275, 349, 391, 398, 631, 856, 1120, 1142
FatI	CATG	9 cut(s)	9, 271, 345, 387, 394, 627, 852, 1116, 1138
FokI	GGATG	1 cut(s)	773
FriOI	GRGCYC	2 cut(s)	559, 908
FspBI	CTAG	2 cut(s)	147, 153
GlaI	GCGC	1 cut(s)	1238
GsuI	CTGGAG	1 cut(s)	922
HaeII	RGCGCY	1 cut(s)	1240
HaeIII	GGCC	5 cut(s)	197, 270, 290, 363, 1176
HapII	CCGG	3 cut(s)	453, 723, 758
HgaI	GACGC	1 cut(s)	1196
HhaI	GCGC	1 cut(s)	1239
Hin1II	CATG	9 cut(s)	13, 275, 349, 391, 398, 631, 856, 1120, 1142
Hin6I	GCGC	1 cut(s)	1237
HinP1I	GCGC	1 cut(s)	1237
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	3 cut(s)	434, 617, 1217
HpaII	CCGG	3 cut(s)	453, 723, 758
HphI	GGTGA	4 cut(s)	27, 361, 747, 989
Hpy166II	GTNNAC	2 cut(s)	238, 244
Hpy188I	TCNGA	8 cut(s)	433, 439, 622, 679, 744, 793, 870, 948
Hpy188III	TCNNGA	3 cut(s)	346, 584, 842
Hpy8I	GTNNAC	2 cut(s)	238, 244
Hpy99I	CGWCG	1 cut(s)	550
HpyCH4III	ACNGT	4 cut(s)	44, 406, 509, 748
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	4 cut(s)	118, 188, 418, 764
HpyF10VI	GCNNNNNNNGC	7 cut(s)	121, 194, 458, 467, 473, 770, 1236
HpyF3I	CTNAG	5 cut(s)	312, 582, 676, 867, 1078
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	9 cut(s)	13, 275, 349, 391, 398, 631, 856, 1120, 1142
HspAI	GCGC	1 cut(s)	1237
KroI	GCCGGC	1 cut(s)	452
KroNI	GCCGGC	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	586, 788, 870
LguI	GCTCTTC	1 cut(s)	564
LmnI	GCTCC	3 cut(s)	253, 357, 903
Lsp1109I	GCAGC	7 cut(s)	102, 130, 133, 399, 402, 451, 898
LweI	GCATC	3 cut(s)	197, 339, 751
MabI	ACCWGGT	1 cut(s)	803
MaeI	CTAG	2 cut(s)	147, 153
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	33, 155
MalI	GATC	3 cut(s)	588, 790, 872
MboI	GATC	3 cut(s)	586, 788, 870
MhlI	GDGCHC	3 cut(s)	559, 908, 1039
MlsI	TGGCCA	1 cut(s)	1176
MluCI	AATT	5 cut(s)	176, 210, 567, 813, 1200
MluNI	TGGCCA	1 cut(s)	1176
MlyI	GAGTC	1 cut(s)	443
MmeI	TCCRAC	2 cut(s)	417, 739
Mox20I	TGGCCA	1 cut(s)	1176
MroNI	GCCGGC	1 cut(s)	452
MscI	TGGCCA	1 cut(s)	1176
MseI	TTAA	3 cut(s)	671, 734, 1004
MslI	CAYNNNNRTG	1 cut(s)	347
Msp20I	TGGCCA	1 cut(s)	1176
MspA1I	CMGCKG	3 cut(s)	267, 303, 464
MspI	CCGG	3 cut(s)	453, 723, 758
MspR9I	CCNGG	2 cut(s)	805, 1128
MvaI	CCWGG	2 cut(s)	805, 1128
MvnI	CGCG	1 cut(s)	514
MwoI	GCNNNNNNNGC	7 cut(s)	121, 194, 458, 467, 473, 770, 1236
NaeI	GCCGGC	1 cut(s)	454
NcoI	CCATGG	1 cut(s)	271
NdeII	GATC	3 cut(s)	586, 788, 870
NgoMIV	GCCGGC	1 cut(s)	452
NlaIII	CATG	9 cut(s)	13, 275, 349, 391, 398, 631, 856, 1120, 1142
NlaIV	GGNNCC	3 cut(s)	451, 460, 905
NmuCI	GTSAC	1 cut(s)	33
NspI	RCATGY	1 cut(s)	1120
PaeR7I	CTCGAG	1 cut(s)	1132
PagI	TCATGA	1 cut(s)	345
PciI	ACATGT	1 cut(s)	1116
PciSI	GCTCTTC	1 cut(s)	564
PdiI	GCCGGC	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	617, 1217
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PscI	ACATGT	1 cut(s)	1116
PsiI	TTATAA	1 cut(s)	650
Psp6I	CCWGG	2 cut(s)	803, 1126
PspGI	CCWGG	2 cut(s)	803, 1126
PspN4I	GGNNCC	3 cut(s)	451, 460, 905
PspXI	VCTCGAGB	1 cut(s)	1132
PstI	CTGCAG	2 cut(s)	120, 420
PvuII	CAGCTG	1 cut(s)	303
RsaI	GTAC	4 cut(s)	64, 131, 151, 687
RsaNI	GTAC	4 cut(s)	63, 130, 150, 686
RseI	CAYNNNNRTG	1 cut(s)	347
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	3 cut(s)	671, 734, 1004
Sau3AI	GATC	3 cut(s)	586, 788, 870
ScaI	AGTACT	1 cut(s)	151
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	2 cut(s)	805, 1128
SduI	GDGCHC	3 cut(s)	559, 908, 1039
SexAI	ACCWGGT	1 cut(s)	803
SfaNI	GCATC	3 cut(s)	197, 339, 751
SfcI	CTRYAG	2 cut(s)	116, 416
Sfr274I	CTCGAG	1 cut(s)	1132
SlaI	CTCGAG	1 cut(s)	1132
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	1132
SmoI	CTYRAG	1 cut(s)	1132
SpeI	ACTAGT	2 cut(s)	146, 152
Sse9I	AATT	5 cut(s)	176, 210, 567, 813, 1200
SsiI	CCGC	8 cut(s)	14, 198, 267, 399, 456, 462, 468, 1230
SspMI	CTAG	2 cut(s)	147, 153
StyD4I	CCNGG	2 cut(s)	803, 1126
StyI	CCWWGG	2 cut(s)	271, 536
TaaI	ACNGT	4 cut(s)	44, 406, 509, 748
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	408, 1133
TasI	AATT	5 cut(s)	176, 210, 567, 813, 1200
TatI	WGTACW	3 cut(s)	129, 149, 685
TauI	GCSGC	6 cut(s)	17, 200, 270, 402, 464, 470
TfiI	GAWTC	2 cut(s)	617, 1217
Tru1I	TTAA	3 cut(s)	671, 734, 1004
Tru9I	TTAA	3 cut(s)	671, 734, 1004
TscAI	CASTG	4 cut(s)	198, 409, 1039, 1086
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	7 cut(s)	115, 118, 121, 412, 415, 464, 886
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	9 cut(s)	78, 204, 551, 869, 876, 975, 1122, 1155, 1230
TspRI	CASTG	4 cut(s)	198, 409, 1039, 1086
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	1120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1145
XhoI	CTCGAG	1 cut(s)	1132
XspI	CTAG	2 cut(s)	147, 153
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.