Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007163

Physical Location & Seq

Genomic Coordinates Reverse (-)

1184069 .. 1185512

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCAATGACCACCGTGGCTTCCAGTCCATTTTTGTTATCCAAATCCCGTCCTTGCTCTTGTACTAATTACAACAAGAGGGGATTCCCACTTAGAGTTGCAGCTGTTGCTTCAATCCCATTTCAACAACCCATCAACGTGGACTACCTGGAACAAGAGTTCAGTGGCCGTGGAGTCATATTCAAAGGCATTGGTGACGATTGCGTTGCCAAGATGAGTCTTGATAATGGCAGCAAAGCCATCTTGATGCTACCAAGTGGCCTAATCGCGTCCTACAAAGCCTCCATGTGGCATGGTGGCACTGTTGAGTTGCTCCAATCTTCAGTCTCCCAAGAAGAAGAAGCCAATAGCATCCGAGGAGGGGTGTCTGTGGCTTTGGAATGTCTCGGTCAAGAACAAGTTTCATGGTCTCCAAGTAATTGGGCTCTTCATGACATCAGAGGAAATCCTCAGGACTCTATTCAGGTAGAACTGATCAGCACTGATTCCCATGACATGGTTCAAGTCAAGTACATTGTGACTCTCCAAGACGACGTCCTAATCTCACAGCTTATGGTCTCTAATAACTCTGATTCTTCGTCACTCCAACTAAGTGGGTGTATTTTAAGCCATCTGACAGTAAGCTCACCAGACGCTACTTACGCTGTTGGTTTGGAAAGATCAGATTTCTTTGGCAGGTTACCCATTTTGACAGGTTCAGCTATAATTCCTCCAGATTGTGGCCAGAAAAGTGAATCTCAATTCAGCCAACTATGGAAACAAATGACATCCAATGGTTGGGGTCCTAAGAATGGCCACCAAACAGAAACTGAACAAAAAGAAGAAATGGAGGAAGGGGAAGAAGATGACAATTATAAGAACTTAAGGGAGCAAATGTGTCGAATATACACCAGTGCGCCTCGAGACTTCACAATCATTGACAGGGGTAGACGAAACTCAGTGGTGGTTGGAAGAGATGGGTTTGAAGAGCTATACATGTTCAGCCCTGGCTCAAGTCATGAATACTACGGCGAATATGCTTATATCTGCATTGGCCAGTCGGCAGTGCTCACTCCAATAATCTTGGGGCCTAAGGAATCATGGACAGGTGGACAGCGCTTACACAATCCAAATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015979 GO:0016020 GO:0019222 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0055114 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

372

Amino Acids

40.97

Weight (kDa)

4.92

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55370 AT1G55370
fragaria_vesca	FvH4_1g28070 FvH4_1g28070 FvH4_4g18560 FvH4_4g18560
malus_domestica	MD14G1002400.v1.1
prunus_persica	Prupe.7G003600_v2.0.a1
pyrus_communis	pycom49g00190
rosa_chinensis	RchiOBHm_Chr3g0497181
rosa_laevigata	RLG00000000831 RLG00000022473
rosa_multiflora	Rmu_sc0002276.1_g000005 Rmu_sc0002893.1_g000013 Rmu_sc0007568.1_g000002 Rmu_ssc0000474.1_g000020
rosa_roxburghii	Rroxscaffold_6G00388300
rosa_rugosa	Rorug03G0291600
rosa_samantha	Rh3AG334900 Rh3BG372600 Rh3CG369000 Rh3DG369900 Rh7CG503300 Rh7DG471700
rosa_wichuraiana	Rw3G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	855
AatII	GACGTC	1 cut(s)	537
Acc36I	ACCTGC	1 cut(s)	666
AccB7I	CCANNNNNTGG	3 cut(s)	496, 719, 777
AccI	GTMKAC	1 cut(s)	928
AccII	CGCG	1 cut(s)	269
AcoI	YGGCCR	4 cut(s)	166, 721, 793, 1033
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	534
AfaI	GTAC	2 cut(s)	64, 512
AfeI	AGCGCT	1 cut(s)	1097
AfiI	CCNNNNNNNGG	6 cut(s)	288, 361, 496, 719, 777, 791
AflII	CTTAAG	1 cut(s)	862
AflIII	ACRYGT	1 cut(s)	975
AgsI	TTSAA	5 cut(s)	114, 125, 184, 503, 965
AjnI	CCWGG	2 cut(s)	147, 985
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	5 cut(s)	104, 550, 624, 701, 970
AluI	AGCT	5 cut(s)	104, 550, 624, 701, 970
Alw21I	GWGCWC	1 cut(s)	1050
Alw26I	GTCTC	5 cut(s)	331, 389, 414, 562, 897
AlwNI	CAGNNNCTG	1 cut(s)	809
Ama87I	CYCGRG	1 cut(s)	900
Aor51HI	AGCGCT	1 cut(s)	1097
AoxI	GGCC	6 cut(s)	166, 259, 721, 793, 1033, 1067
ApeKI	GCWGC	2 cut(s)	101, 231
AspLEI	GCGC	2 cut(s)	898, 1098
AspS9I	GGNCC	2 cut(s)	782, 1067
AsuHPI	GGTGA	2 cut(s)	206, 618
AvaI	CYCGRG	1 cut(s)	900
AvaII	GGWCC	1 cut(s)	782
AxyI	CCTNAGG	2 cut(s)	450, 1071
BalI	TGGCCA	3 cut(s)	723, 795, 1035
BanII	GRGCYC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	1050
BbvI	GCAGC	2 cut(s)	113, 243
BccI	CCATC	4 cut(s)	140, 248, 618, 950
BceAI	ACGGC	2 cut(s)	153, 1024
BcgI	CGANNNNNNTGC	4 cut(s)	188, 222, 860, 894
BciT130I	CCWGG	2 cut(s)	149, 987
BclI	TGATCA	1 cut(s)	474
BcoDI	GTCTC	5 cut(s)	331, 389, 414, 562, 897
BfoI	RGCGCY	1 cut(s)	1099
BfrI	CTTAAG	1 cut(s)	862
BfuAI	ACCTGC	1 cut(s)	666
BisI	GCNGC	2 cut(s)	102, 232
BlsI	GCNGC	2 cut(s)	103, 233
Bme1390I	CCNGG	2 cut(s)	149, 987
Bme18I	GGWCC	1 cut(s)	782
BmeT110I	CYCGRG	1 cut(s)	900
BmgT120I	GGNCC	2 cut(s)	782, 1067
BmiI	GGNNCC	2 cut(s)	783, 1068
BmrFI	CCNGG	2 cut(s)	149, 987
BmsI	GCATC	2 cut(s)	237, 360
BpmI	CTGGAG	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	976
BsaHI	GRCGYC	1 cut(s)	534
BsaI	GGTCTC	2 cut(s)	414, 562
BsaJI	CCNNGG	4 cut(s)	15, 169, 355, 985
BsaXI	ACNNNNNCTCC	4 cut(s)	266, 296, 860, 890
Bsc4I	CCNNNNNNNGG	6 cut(s)	288, 361, 496, 719, 777, 791
Bse1I	ACTGG	3 cut(s)	24, 891, 1036
Bse21I	CCTNAGG	2 cut(s)	450, 1071
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	149, 987
BseDI	CCNNGG	4 cut(s)	15, 169, 355, 985
BseGI	GGATG	2 cut(s)	351, 767
BseLI	CCNNNNNNNGG	6 cut(s)	288, 361, 496, 719, 777, 791
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	464, 951
BseNI	ACTGG	3 cut(s)	24, 891, 1036
BseRI	GAGGAG	1 cut(s)	372
BseXI	GCAGC	2 cut(s)	113, 243
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	6 cut(s)	168, 261, 723, 795, 1035, 1069
BsiHKAI	GWGCWC	1 cut(s)	1050
BsiHKCI	CYCGRG	1 cut(s)	900
BslI	CCNNNNNNNGG	6 cut(s)	288, 361, 496, 719, 777, 791
BsmAI	GTCTC	5 cut(s)	331, 389, 414, 562, 897
BsnI	GGCC	6 cut(s)	168, 261, 723, 795, 1035, 1069
Bso31I	GGTCTC	2 cut(s)	414, 562
BsoBI	CYCGRG	1 cut(s)	900
Bsp1286I	GDGCHC	2 cut(s)	427, 1050
Bsp143I	GATC	2 cut(s)	474, 659
BspANI	GGCC	6 cut(s)	168, 261, 723, 795, 1035, 1069
BspCNI	CTCAG	2 cut(s)	463, 950
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	2 cut(s)	430, 997
BspLI	GGNNCC	2 cut(s)	783, 1068
BspMI	ACCTGC	1 cut(s)	666
BspQI	GCTCTTC	2 cut(s)	432, 960
BspTI	CTTAAG	1 cut(s)	862
BspTNI	GGTCTC	2 cut(s)	414, 562
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	24, 891, 1036
BssECI	CCNNGG	4 cut(s)	15, 169, 355, 985
BssMI	GATC	2 cut(s)	474, 659
BssNI	GRCGYC	1 cut(s)	534
Bst2UI	CCWGG	2 cut(s)	149, 987
Bst4CI	ACNGT	3 cut(s)	16, 304, 619
Bst6I	CTCTTC	3 cut(s)	432, 946, 960
BstACI	GRCGYC	1 cut(s)	534
BstAFI	CTTAAG	1 cut(s)	862
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstDEI	CTNAG	6 cut(s)	92, 450, 590, 786, 937, 1071
BstDSI	CCRYGG	2 cut(s)	15, 169
BstEII	GGTNACC	1 cut(s)	678
BstF5I	GGATG	2 cut(s)	351, 767
BstFNI	CGCG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	1099
BstHHI	GCGC	2 cut(s)	898, 1098
BstKTI	GATC	2 cut(s)	477, 662
BstMAI	GTCTC	5 cut(s)	331, 389, 414, 562, 897
BstMBI	GATC	2 cut(s)	474, 659
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 641
BstNI	CCWGG	2 cut(s)	149, 987
BstNSI	RCATGY	1 cut(s)	979
BstPI	GGTNACC	1 cut(s)	678
BstSCI	CCNGG	2 cut(s)	147, 985
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	113, 243
BstXI	CCANNNNNNTGG	3 cut(s)	139, 420, 593
Bsu36I	CCTNAGG	2 cut(s)	450, 1071
BsuRI	GGCC	6 cut(s)	168, 261, 723, 795, 1035, 1069
BtgI	CCRYGG	2 cut(s)	15, 169
BtsCI	GGATG	2 cut(s)	351, 767
BtsI	GCAGTG	1 cut(s)	1050
BtsIMutI	CAGTG	6 cut(s)	169, 300, 480, 898, 945, 1050
BveI	ACCTGC	1 cut(s)	666
CaiI	CAGNNNCTG	1 cut(s)	809
CciI	TCATGA	2 cut(s)	430, 997
CfoI	GCGC	2 cut(s)	898, 1098
Cfr13I	GGNCC	2 cut(s)	782, 1067
CseI	GACGC	2 cut(s)	258, 641
Csp6I	GTAC	2 cut(s)	63, 511
CviAII	CATG	9 cut(s)	286, 293, 405, 431, 491, 496, 976, 998, 1080
CviQI	GTAC	2 cut(s)	63, 511
DdeI	CTNAG	6 cut(s)	92, 450, 590, 786, 937, 1071
DpnI	GATC	2 cut(s)	476, 661
DpnII	GATC	2 cut(s)	474, 659
EaeI	YGGCCR	4 cut(s)	166, 721, 793, 1033
Eam1104I	CTCTTC	3 cut(s)	432, 946, 960
EarI	CTCTTC	3 cut(s)	432, 946, 960
Eco24I	GRGCYC	1 cut(s)	427
Eco31I	GGTCTC	2 cut(s)	414, 562
Eco47I	GGWCC	1 cut(s)	782
Eco47III	AGCGCT	1 cut(s)	1097
Eco57I	CTGAAG	1 cut(s)	306
Eco81I	CCTNAGG	2 cut(s)	450, 1071
Eco88I	CYCGRG	1 cut(s)	900
Eco91I	GGTNACC	1 cut(s)	678
EcoO109I	RGGNCCY	2 cut(s)	782, 1067
EcoO65I	GGTNACC	1 cut(s)	678
EcoRII	CCWGG	2 cut(s)	147, 985
EcoT38I	GRGCYC	1 cut(s)	427
FaeI	CATG	9 cut(s)	289, 296, 408, 434, 494, 499, 979, 1001, 1083
FatI	CATG	9 cut(s)	285, 292, 404, 430, 490, 495, 975, 997, 1079
FbaI	TGATCA	1 cut(s)	474
FblI	GTMKAC	1 cut(s)	928
Fnu4HI	GCNGC	2 cut(s)	102, 232
FokI	GGATG	2 cut(s)	338, 754
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	2 cut(s)	102, 232
GlaI	GCGC	2 cut(s)	897, 1097
GluI	GCNGC	2 cut(s)	102, 232
GsuI	CTGGAG	1 cut(s)	696
HaeII	RGCGCY	1 cut(s)	1099
HaeIII	GGCC	6 cut(s)	168, 261, 723, 795, 1035, 1069
HgaI	GACGC	2 cut(s)	258, 641
HhaI	GCGC	2 cut(s)	898, 1098
Hin1I	GRCGYC	1 cut(s)	534
Hin1II	CATG	9 cut(s)	289, 296, 408, 434, 494, 499, 979, 1001, 1083
Hin6I	GCGC	2 cut(s)	896, 1096
HinP1I	GCGC	2 cut(s)	896, 1096
HinfI	GANTC	9 cut(s)	84, 174, 217, 455, 485, 520, 572, 734, 1076
HphI	GGTGA	2 cut(s)	206, 618
Hpy166II	GTNNAC	3 cut(s)	142, 929, 1091
Hpy188I	TCNGA	5 cut(s)	356, 440, 571, 615, 664
Hpy188III	TCNNGA	8 cut(s)	221, 244, 392, 431, 452, 713, 902, 998
Hpy8I	GTNNAC	3 cut(s)	142, 929, 1091
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	1 cut(s)	827
HpyCH4III	ACNGT	3 cut(s)	16, 304, 619
HpyCH4IV	ACGT	2 cut(s)	138, 534
HpyCH4V	TGCA	2 cut(s)	101, 1029
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 641
HpyF3I	CTNAG	6 cut(s)	92, 450, 590, 786, 937, 1071
HpySE526I	ACGT	2 cut(s)	138, 534
Hsp92I	GRCGYC	1 cut(s)	534
Hsp92II	CATG	9 cut(s)	289, 296, 408, 434, 494, 499, 979, 1001, 1083
HspAI	GCGC	2 cut(s)	896, 1096
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	2 cut(s)	474, 659
LguI	GCTCTTC	2 cut(s)	432, 960
LmnI	GCTCC	2 cut(s)	318, 868
Lsp1109I	GCAGC	2 cut(s)	113, 243
LweI	GCATC	2 cut(s)	237, 360
MaeII	ACGT	2 cut(s)	138, 534
MaeIII	GTNAC	4 cut(s)	194, 517, 579, 678
MalI	GATC	2 cut(s)	476, 661
MboI	GATC	2 cut(s)	474, 659
MhlI	GDGCHC	2 cut(s)	427, 1050
MlsI	TGGCCA	3 cut(s)	723, 795, 1035
MluCI	AATT	5 cut(s)	67, 418, 705, 740, 850
MluNI	TGGCCA	3 cut(s)	723, 795, 1035
MlyI	GAGTC	4 cut(s)	183, 226, 449, 514
MmeI	TCCRAC	2 cut(s)	610, 928
MnlI	CCTC	9 cut(s)	72, 292, 350, 353, 434, 459, 720, 823, 909
Mox20I	TGGCCA	3 cut(s)	723, 795, 1035
MscI	TGGCCA	3 cut(s)	723, 795, 1035
MseI	TTAA	2 cut(s)	605, 863
MslI	CAYNNNNRTG	2 cut(s)	137, 245
Msp20I	TGGCCA	3 cut(s)	723, 795, 1035
MspA1I	CMGCKG	1 cut(s)	104
MspCI	CTTAAG	1 cut(s)	862
MspR9I	CCNGG	2 cut(s)	149, 987
MvaI	CCWGG	2 cut(s)	149, 987
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	2 cut(s)	107, 641
NdeII	GATC	2 cut(s)	474, 659
NlaIII	CATG	9 cut(s)	289, 296, 408, 434, 494, 499, 979, 1001, 1083
NlaIV	GGNNCC	2 cut(s)	783, 1068
NmuCI	GTSAC	3 cut(s)	194, 517, 579
NspI	RCATGY	1 cut(s)	979
PaeR7I	CTCGAG	1 cut(s)	900
PagI	TCATGA	2 cut(s)	430, 997
PciI	ACATGT	1 cut(s)	975
PciSI	GCTCTTC	2 cut(s)	432, 960
PfeI	GAWTC	5 cut(s)	84, 485, 572, 734, 1076
PflFI	GACNNNGTC	1 cut(s)	533
PflMI	CCANNNNNTGG	3 cut(s)	496, 719, 777
PkrI	GCNGC	2 cut(s)	103, 233
PleI	GAGTC	4 cut(s)	182, 225, 449, 514
PpsI	GAGTC	4 cut(s)	182, 225, 449, 514
PpuMI	RGGWCCY	1 cut(s)	782
PscI	ACATGT	1 cut(s)	975
PsiI	TTATAA	1 cut(s)	855
Psp5II	RGGWCCY	1 cut(s)	782
Psp6I	CCWGG	2 cut(s)	147, 985
PspEI	GGTNACC	1 cut(s)	678
PspGI	CCWGG	2 cut(s)	147, 985
PspN4I	GGNNCC	2 cut(s)	783, 1068
PspPI	GGNCC	2 cut(s)	782, 1067
PspPPI	RGGWCCY	1 cut(s)	782
PstNI	CAGNNNCTG	1 cut(s)	809
PsyI	GACNNNGTC	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	64, 512
RsaNI	GTAC	2 cut(s)	63, 511
RseI	CAYNNNNRTG	2 cut(s)	137, 245
SapI	GCTCTTC	2 cut(s)	432, 960
SaqAI	TTAA	2 cut(s)	605, 863
SatI	GCNGC	2 cut(s)	102, 232
Sau3AI	GATC	2 cut(s)	474, 659
Sau96I	GGNCC	2 cut(s)	782, 1067
SchI	GAGTC	4 cut(s)	183, 226, 449, 514
ScrFI	CCNGG	2 cut(s)	149, 987
SduI	GDGCHC	2 cut(s)	427, 1050
SfaNI	GCATC	2 cut(s)	237, 360
Sfr274I	CTCGAG	1 cut(s)	900
SinI	GGWCC	1 cut(s)	782
SlaI	CTCGAG	1 cut(s)	900
SmiMI	CAYNNNNRTG	2 cut(s)	137, 245
SmlI	CTYRAG	3 cut(s)	862, 900, 991
SmoI	CTYRAG	3 cut(s)	862, 900, 991
Sse9I	AATT	5 cut(s)	67, 418, 705, 740, 850
StyD4I	CCNGG	2 cut(s)	147, 985
TaaI	ACNGT	3 cut(s)	16, 304, 619
TaiI	ACGT	2 cut(s)	141, 537
TaqI	TCGA	2 cut(s)	880, 901
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	5 cut(s)	67, 418, 705, 740, 850
TatI	WGTACW	2 cut(s)	62, 510
TfiI	GAWTC	5 cut(s)	84, 485, 572, 734, 1076
Tru1I	TTAA	2 cut(s)	605, 863
Tru9I	TTAA	2 cut(s)	605, 863
TscAI	CASTG	6 cut(s)	169, 307, 487, 898, 945, 1050
TseFI	GTSAC	3 cut(s)	194, 517, 579
TseI	GCWGC	2 cut(s)	101, 231
Tsp45I	GTSAC	3 cut(s)	194, 517, 579
TspDTI	ATGAA	3 cut(s)	393, 419, 1014
TspRI	CASTG	6 cut(s)	169, 307, 487, 898, 945, 1050
Tth111I	GACNNNGTC	1 cut(s)	533
Van91I	CCANNNNNTGG	3 cut(s)	496, 719, 777
Vha464I	CTTAAG	1 cut(s)	862
VpaK11BI	GGWCC	1 cut(s)	782
XceI	RCATGY	1 cut(s)	979
XhoI	CTCGAG	1 cut(s)	900
XmiI	GTMKAC	1 cut(s)	928
ZraI	GACGTC	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.