Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007163

Physical Location & Seq

Genomic Coordinates Reverse (-)

22430476 .. 22431479

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCAATGGCCACCATGGCTTCCAGTCGTCCATTCTTGTTCTCCAAATTCAGGCATTGCTCTCGTACTAGTTACAAGAAGAGGGTAGTCCCACTTAGAGTTGCAGCTGCGGCTTCAATCCCATTTCAGCAACCCATCAACGTGGACTACCTGGAGCAAGAATTCAGTGGCCATGGAGTCATATTCAAAGGCATTGGTGACGATTGCGTTGCCAAGATGAGCCTTGACAATGGCAGCAAAGCCATCTTGATGCTTCCAAGTGGCCTAATCACATCTTACAAAGCCACCTTGTGGCATGGTGGCACTGCTGAGTTACTCCAGTCTTCAGTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015979 GO:0016020 GO:0019222 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0055114 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.07

Weight (kDa)

9.51

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55370 AT1G55370
fragaria_vesca	FvH4_1g28070 FvH4_1g28070 FvH4_4g18560 FvH4_4g18560
malus_domestica	MD14G1002400.v1.1
prunus_persica	Prupe.7G003600_v2.0.a1
pyrus_communis	pycom49g00190
rosa_chinensis	RchiOBHm_Chr3g0497181
rosa_laevigata	RLG00000000831 RLG00000022473
rosa_multiflora	Rmu_sc0002276.1_g000005 Rmu_sc0002893.1_g000013 Rmu_sc0007568.1_g000002 Rmu_ssc0000474.1_g000020
rosa_roxburghii	Rroxscaffold_6G00388300
rosa_rugosa	Rorug03G0291600
rosa_samantha	Rh3AG334900 Rh3BG372600 Rh3CG369000 Rh3DG369900 Rh7CG503300 Rh7DG471700
rosa_wichuraiana	Rw3G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	291
AciI	CCGC	1 cut(s)	110
AcoI	YGGCCR	2 cut(s)	9, 169
AcsI	RAATTY	2 cut(s)	47, 161
AcuI	CTGAAG	1 cut(s)	309
AdeI	CACNNNGTG	1 cut(s)	291
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	51, 291
AgsI	TTSAA	2 cut(s)	117, 187
AhlI	ACTAGT	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
AoxI	GGCC	3 cut(s)	9, 169, 262
ApeKI	GCWGC	3 cut(s)	104, 107, 234
ApoI	RAATTY	2 cut(s)	47, 161
AsuHPI	GGTGA	1 cut(s)	209
BalI	TGGCCA	2 cut(s)	11, 171
BbsI	GAAGAC	1 cut(s)	315
BbvI	GCAGC	3 cut(s)	94, 116, 246
BccI	CCATC	2 cut(s)	143, 251
BcgI	CGANNNNNNTGC	4 cut(s)	44, 78, 191, 225
BciT130I	CCWGG	1 cut(s)	152
BcuI	ACTAGT	1 cut(s)	68
BfaI	CTAG	1 cut(s)	69
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	4 cut(s)	105, 108, 111, 235
BlsI	GCNGC	4 cut(s)	106, 109, 112, 236
Bme1390I	CCNGG	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	315
BpmI	CTGGAG	2 cut(s)	173, 302
BsaJI	CCNNGG	2 cut(s)	15, 172
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 291
Bse1I	ACTGG	2 cut(s)	24, 319
Bse3DI	GCAATG	2 cut(s)	12, 55
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	15, 172
BseLI	CCNNNNNNNGG	2 cut(s)	51, 291
BseMI	GCAATG	2 cut(s)	12, 55
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	24, 319
BseXI	GCAGC	3 cut(s)	94, 116, 246
BshFI	GGCC	3 cut(s)	11, 171, 264
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	51, 291
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	3 cut(s)	11, 171, 264
Bsp19I	CCATGG	2 cut(s)	15, 172
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	3 cut(s)	11, 171, 264
BspCNI	CTCAG	1 cut(s)	301
BsrDI	GCAATG	2 cut(s)	12, 55
BsrI	ACTGG	2 cut(s)	24, 319
BssECI	CCNNGG	2 cut(s)	15, 172
BssT1I	CCWWGG	2 cut(s)	15, 172
Bst2UI	CCWGG	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	95, 309
BstDSI	CCRYGG	2 cut(s)	15, 172
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 110
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstV1I	GCAGC	3 cut(s)	94, 116, 246
BstV2I	GAAGAC	1 cut(s)	315
BstXI	CCANNNNNNTGG	1 cut(s)	142
BsuRI	GGCC	3 cut(s)	11, 171, 264
BtgI	CCRYGG	2 cut(s)	15, 172
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	172, 303
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	3 cut(s)	16, 173, 296
CviJI	RGCY	9 cut(s)	11, 20, 107, 113, 171, 222, 242, 264, 284
CviKI_1	RGCY	9 cut(s)	11, 20, 107, 113, 171, 222, 242, 264, 284
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	2 cut(s)	95, 309
DraIII	CACNNNGTG	1 cut(s)	291
EaeI	YGGCCR	2 cut(s)	9, 169
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco130I	CCWWGG	2 cut(s)	15, 172
Eco57I	CTGAAG	1 cut(s)	309
EcoRI	GAATTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	2 cut(s)	15, 172
ErhI	CCWWGG	2 cut(s)	15, 172
FaeI	CATG	3 cut(s)	19, 176, 299
FaiI	YATR	4 cut(s)	17, 174, 182, 297
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	3 cut(s)	15, 172, 295
Fnu4HI	GCNGC	4 cut(s)	105, 108, 111, 235
Fsp4HI	GCNGC	4 cut(s)	105, 108, 111, 235
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	4 cut(s)	105, 108, 111, 235
GsuI	CTGGAG	2 cut(s)	173, 302
HaeIII	GGCC	3 cut(s)	11, 171, 264
Hin1II	CATG	3 cut(s)	19, 176, 299
HinfI	GANTC	1 cut(s)	177
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	247
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 110
HpyF3I	CTNAG	2 cut(s)	95, 309
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	3 cut(s)	19, 176, 299
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	5 cut(s)	37, 37, 137, 164, 332
Lsp1109I	GCAGC	3 cut(s)	94, 116, 246
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	3 cut(s)	71, 197, 312
MboII	GAAGA	2 cut(s)	91, 315
MlsI	TGGCCA	2 cut(s)	11, 171
MluCI	AATT	2 cut(s)	47, 161
MluNI	TGGCCA	2 cut(s)	11, 171
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	1 cut(s)	75
Mox20I	TGGCCA	2 cut(s)	11, 171
MscI	TGGCCA	2 cut(s)	11, 171
MslI	CAYNNNNRTG	2 cut(s)	140, 248
Msp20I	TGGCCA	2 cut(s)	11, 171
MspA1I	CMGCKG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	17, 110
NcoI	CCATGG	2 cut(s)	15, 172
NlaIII	CATG	3 cut(s)	19, 176, 299
NmuCI	GTSAC	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	291
PkrI	GCNGC	4 cut(s)	106, 109, 112, 236
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
RseI	CAYNNNNRTG	2 cut(s)	140, 248
SatI	GCNGC	4 cut(s)	105, 108, 111, 235
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	4 cut(s)	109, 144, 153, 290
SfaNI	GCATC	1 cut(s)	240
SmiMI	CAYNNNNRTG	2 cut(s)	140, 248
SpeI	ACTAGT	1 cut(s)	68
Sse9I	AATT	2 cut(s)	47, 161
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	2 cut(s)	15, 172
TaiI	ACGT	1 cut(s)	144
TasI	AATT	2 cut(s)	47, 161
TauI	GCSGC	1 cut(s)	113
TscAI	CASTG	2 cut(s)	172, 310
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	3 cut(s)	104, 107, 234
Tsp45I	GTSAC	1 cut(s)	197
TspRI	CASTG	2 cut(s)	172, 310
Van91I	CCANNNNNTGG	1 cut(s)	291
XapI	RAATTY	2 cut(s)	47, 161
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.