Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002276.1

Orthogroup ID

OG0007163

Physical Location & Seq

Genomic Coordinates Forward (+)

20226 .. 20576

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002276.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggcaatgacctccatggcttccagtccctttttgttatccaaatctcgccttgctcttgtactaattacaataagaagggattcccacttagacttgcagctgttatttcaatcccatttcaacaacccatcaacggggagtggggactacctggaacaagagttcagtggccatggagttatattcaaaggcattggtgccgattgcgttgccaagatgagtattgataacggcagcaaagccatcttgatgttgccaagtggcctaatcacatcctacaaagcctccatgtcgcatggtgtcactgttgagttgctccaatcttcagtctcccaagaagaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015979 GO:0016020 GO:0019222 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0055114 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.51

Weight (kDa)

5.73

Isoelectric Point (pI)

60.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55370 AT1G55370
fragaria_vesca	FvH4_1g28070 FvH4_1g28070 FvH4_4g18560 FvH4_4g18560
malus_domestica	MD14G1002400.v1.1
prunus_persica	Prupe.7G003600_v2.0.a1
pyrus_communis	pycom49g00190
rosa_chinensis	RchiOBHm_Chr3g0497181
rosa_laevigata	RLG00000000831 RLG00000022473
rosa_multiflora	Rmu_sc0002276.1_g000005 Rmu_sc0002893.1_g000013 Rmu_sc0007568.1_g000002 Rmu_ssc0000474.1_g000020
rosa_roxburghii	Rroxscaffold_6G00388300
rosa_rugosa	Rorug03G0291600
rosa_samantha	Rh3AG334900 Rh3BG372600 Rh3CG369000 Rh3DG369900 Rh7CG503300 Rh7DG471700
rosa_wichuraiana	Rw3G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	2 cut(s)	136, 137
AgsI	TTSAA	3 cut(s)	113, 124, 190
AjnI	CCWGG	1 cut(s)	153
AloI	GAACNNNNNNTCC	2 cut(s)	149, 181
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	337
AoxI	GGCC	2 cut(s)	172, 265
ApeKI	GCWGC	2 cut(s)	100, 237
Asp700I	GAANNNNTTC	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	112, 249
BccI	CCATC	2 cut(s)	139, 254
BceAI	ACGGC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	337
BisI	GCNGC	2 cut(s)	101, 238
BlsI	GCNGC	2 cut(s)	102, 239
Bme1390I	CCNGG	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	15, 175
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 137
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	15, 175
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	2 cut(s)	136, 137
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	112, 249
BshFI	GGCC	2 cut(s)	174, 267
BshNI	GGYRCC	1 cut(s)	200
BslFI	GGGAC	2 cut(s)	12, 161
BslI	CCNNNNNNNGG	2 cut(s)	136, 137
BsmAI	GTCTC	1 cut(s)	337
BsmFI	GGGAC	2 cut(s)	12, 161
BsnI	GGCC	2 cut(s)	174, 267
Bsp19I	CCATGG	2 cut(s)	15, 175
BspANI	GGCC	2 cut(s)	174, 267
BspLI	GGNNCC	1 cut(s)	202
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	15, 175
BssT1I	CCWWGG	2 cut(s)	15, 175
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	310
BstDEI	CTNAG	1 cut(s)	91
BstDSI	CCRYGG	2 cut(s)	15, 175
BstF5I	GGATG	1 cut(s)	275
BstMAI	GTCTC	1 cut(s)	337
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	112, 249
BsuRI	GGCC	2 cut(s)	174, 267
BtgI	CCRYGG	2 cut(s)	15, 175
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	2 cut(s)	175, 306
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	4 cut(s)	16, 176, 292, 299
CviJI	RGCY	6 cut(s)	20, 103, 174, 245, 267, 287
CviKI_1	RGCY	6 cut(s)	20, 103, 174, 245, 267, 287
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	15, 175
Eco57I	CTGAAG	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	2 cut(s)	15, 175
ErhI	CCWWGG	2 cut(s)	15, 175
FaeI	CATG	4 cut(s)	19, 179, 295, 302
FaiI	YATR	5 cut(s)	17, 177, 185, 293, 300
FaqI	GGGAC	2 cut(s)	12, 161
FatI	CATG	4 cut(s)	15, 175, 291, 298
Fnu4HI	GCNGC	2 cut(s)	101, 238
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	2 cut(s)	101, 238
GluI	GCNGC	2 cut(s)	101, 238
HaeIII	GGCC	2 cut(s)	174, 267
Hin1II	CATG	4 cut(s)	19, 179, 295, 302
HinfI	GANTC	1 cut(s)	83
Hpy188III	TCNNGA	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	1 cut(s)	100
HpyF3I	CTNAG	1 cut(s)	91
Hsp92II	CATG	4 cut(s)	19, 179, 295, 302
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	3 cut(s)	37, 140, 167
Lsp1109I	GCAGC	2 cut(s)	112, 249
MaeIII	GTNAC	1 cut(s)	304
MboII	GAAGA	1 cut(s)	318
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	1 cut(s)	66
MluNI	TGGCCA	1 cut(s)	174
MnlI	CCTC	2 cut(s)	22, 298
Mox20I	TGGCCA	1 cut(s)	174
MroXI	GAANNNNTTC	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	251
Msp20I	TGGCCA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
NcoI	CCATGG	2 cut(s)	15, 175
NlaIII	CATG	4 cut(s)	19, 179, 295, 302
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	102, 239
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	103
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	251
SatI	GCNGC	2 cut(s)	101, 238
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	3 cut(s)	14, 105, 156
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	2 cut(s)	15, 175
TaaI	ACNGT	1 cut(s)	310
TasI	AATT	1 cut(s)	66
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	83
TscAI	CASTG	2 cut(s)	175, 313
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	100, 237
Tsp45I	GTSAC	1 cut(s)	304
TspRI	CASTG	2 cut(s)	175, 313
XmnI	GAANNNNTTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.