Rorug03G0291600

photosynthetic electron transport in photosystem I

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0007163
Physical Location & Seq
Forward (+)
29772062 .. 29775301
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0291600.1

Sequence Viewer

Length: 1182 bp
ATGGTGGCCGAACCCGAAGCTAAGATCATGTGTCCGCAGAACGTTGAAGTGTTTGCTAAAGGGATGAGCGTTGGTGAGGTTGAAGATGTAGTTGCATCGATTTCGCCAAAGAGTTTTGACCGAAGTCGCCCTCTGGAATTTGTCTCCCCTGCTGCTGCTTTAATATCGACCTCCCAACCTGATGTTAAACCAGCGGATAAAGTTTCAGACTTGGCTCCTGAACCAGCGGACCTGGAATTCTTTCCCAGGCTCCGTTCTGGTAGCTTCGCTGACATTGGACCGCGTAGATACATGGAAGATGAACATATACTGATAGACGATCTATCTTCACACCTGGGATCGCTCTTTAGTTTTCCCACCCCAAGTGCTTTTTATGGGGTATTTGACGGACATGGAGGACCTGAAGCAGCAGCTTATGTTCGAAAAAATGTGATGAGACTCTTGTTTGATGATGTCAATTTTCCCCAAGCTAGTGAAGTTAATAAAATTTTCTCAGAGGAGCTCGAGAATACTCTCCGTAAAGCATTTCATCAGGTAGACCTTGCTTTGGCAGATGACTGCAGTGTAAGCAGTTCTTCTGGGACGACAGCATTAACTGCCATGATCTTTGGAAGGCTTTTGATGGTAGCCAATACTGGTGATTGTCGAGCTGTTCTCTGCAGGAAGGGAGAGGCAATTGATATGTCCCAAGACCATAGGCCAATATATCCCTCGGAACGGAAGAGGGTTGAAGAATTGGGGGGATATGTTGATGATGGGTATCTGAATGGTGTCTTATCAGTCTCCCGAGCCTTAGGTGACTGGGACATGAAGTTTCCTTGTGGTTCTGCTTCACCCCTTATCGCCGAACCAGAGTTCCGTAGGATGGATTTAACAGAGGAAGATGAGTTTCTCATTATAGGGTGTGATGGGATCTGGGATGTGATGTCAAGTCAGCATGCGGTTAGCCTTGTTCGCCGTGGCCTGCGGCGGCATGATGACCCAGAGCAGTGTGCCAAGGATCTTGTCATGGAGGCCCTTCGCCTCAACACGTTTGATAATCTTACTGTAATTGTTGTATGCTTCTCTTCTCTTGATCAGCGGGAACCATTATCACCACCTCGGGAACGGAGATTTAGGTGTTGCAGCCTCTCTGCTGAGGCTCTCTGTAGCCTAAGGAGCTTGTTGGATACAAGTGGTTGA

Protein Analysis

393

Amino Acids

43.39

Weight (kDa)

4.78

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 95 - 347 1.5e-64 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 537
AccII CGCG 1 cut(s) 283
AciI CCGC 8 cut(s) 35, 194, 227, 281, 941, 967, 970, 1081
AclI AACGTT 1 cut(s) 42
AclWI GGATC 3 cut(s) 346, 920, 1008
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 3 cut(s) 137, 236, 486
AcuI CTGAAG 1 cut(s) 423
AfiI CCNNNNNNNGG 3 cut(s) 547, 717, 865
AflIII ACRYGT 1 cut(s) 1029
AgsI TTSAA 3 cut(s) 47, 83, 731
AjnI CCWGG 3 cut(s) 231, 245, 333
AloI GAACNNNNNNTCC 2 cut(s) 840, 872
AluBI AGCT 7 cut(s) 20, 264, 413, 470, 502, 650, 1161
AluI AGCT 7 cut(s) 20, 264, 413, 470, 502, 650, 1161
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 3 cut(s) 148, 430, 787
AlwI GGATC 3 cut(s) 346, 920, 1008
Ama87I CYCGRG 3 cut(s) 503, 786, 1101
AoxI GGCC 4 cut(s) 6, 698, 961, 1014
ApeKI GCWGC 5 cut(s) 152, 155, 407, 410, 1125
ApoI RAATTY 3 cut(s) 137, 236, 486
Asp700I GAANNNNTTC 1 cut(s) 240
AspS9I GGNCC 4 cut(s) 229, 278, 398, 1015
AsuHPI GGTGA 5 cut(s) 86, 650, 809, 825, 1086
AsuII TTCGAA 1 cut(s) 421
AvaI CYCGRG 3 cut(s) 503, 786, 1101
AvaII GGWCC 3 cut(s) 229, 278, 398
AxyI CCTNAGG 2 cut(s) 793, 1154
BanII GRGCYC 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 504
BbvCI CCTCAGC 1 cut(s) 1137
BbvI GCAGC 5 cut(s) 139, 142, 419, 422, 1137
BccI CCATC 4 cut(s) 616, 749, 859, 902
BceAI ACGGC 1 cut(s) 942
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 3 cut(s) 233, 247, 335
BciVI GTATCC 1 cut(s) 1162
BclI TGATCA 1 cut(s) 1075
BcoDI GTCTC 3 cut(s) 148, 430, 787
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 3 cut(s) 559, 658, 1147
BfuI GTATCC 1 cut(s) 1162
BisI GCNGC 7 cut(s) 153, 156, 408, 411, 968, 971, 1126
BlsI GCNGC 7 cut(s) 154, 157, 409, 412, 969, 972, 1127
Bme1390I CCNGG 3 cut(s) 233, 247, 335
Bme18I GGWCC 3 cut(s) 229, 278, 398
BmeT110I CYCGRG 3 cut(s) 503, 786, 1101
BmgT120I GGNCC 4 cut(s) 229, 278, 398, 1015
BmiI GGNNCC 3 cut(s) 216, 251, 1086
BmrFI CCNGG 3 cut(s) 233, 247, 335
BmrI ACTGGG 1 cut(s) 811
BmsI GCATC 1 cut(s) 104
BmuI ACTGGG 1 cut(s) 811
BoxI GACNNNNGTC 1 cut(s) 123
BplI GAGNNNNNCTC 2 cut(s) 639, 671
Bpu10I CCTNAGC 1 cut(s) 1137
Bpu14I TTCGAA 1 cut(s) 421
Bsa29I ATCGAT 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 759
BsaJI CCNNGG 6 cut(s) 245, 334, 711, 958, 996, 1100
Bsc4I CCNNNNNNNGG 3 cut(s) 547, 717, 865
Bse1I ACTGG 2 cut(s) 640, 806
Bse21I CCTNAGG 2 cut(s) 793, 1154
Bse8I GATNNNNATC 1 cut(s) 759
BseBI CCWGG 3 cut(s) 233, 247, 335
BseCI ATCGAT 1 cut(s) 98
BseDI CCNNGG 6 cut(s) 245, 334, 711, 958, 996, 1100
BseGI GGATG 3 cut(s) 69, 870, 925
BseJI GATNNNNATC 1 cut(s) 759
BseLI CCNNNNNNNGG 3 cut(s) 547, 717, 865
BseMII CTCAG 2 cut(s) 507, 1128
BseNI ACTGG 2 cut(s) 640, 806
BseRI GAGGAG 1 cut(s) 512
BseXI GCAGC 5 cut(s) 139, 142, 419, 422, 1137
Bsh1236I CGCG 1 cut(s) 283
BshFI GGCC 4 cut(s) 8, 700, 963, 1016
BshVI ATCGAT 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 504
BsiHKCI CYCGRG 3 cut(s) 503, 786, 1101
BslFI GGGAC 3 cut(s) 595, 670, 818
BslI CCNNNNNNNGG 3 cut(s) 547, 717, 865
BsmAI GTCTC 3 cut(s) 148, 430, 787
BsmFI GGGAC 3 cut(s) 595, 670, 818
BsnI GGCC 4 cut(s) 8, 700, 963, 1016
BsoBI CYCGRG 3 cut(s) 503, 786, 1101
Bsp119I TTCGAA 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 7 cut(s) 24, 319, 338, 603, 912, 1000, 1075
BspACI CCGC 8 cut(s) 35, 194, 227, 281, 941, 967, 970, 1081
BspANI GGCC 4 cut(s) 8, 700, 963, 1016
BspCNI CTCAG 2 cut(s) 506, 1129
BspDI ATCGAT 1 cut(s) 98
BspFNI CGCG 1 cut(s) 283
BspLI GGNNCC 3 cut(s) 216, 251, 1086
BspMAI CTGCAG 2 cut(s) 563, 662
BspPI GGATC 3 cut(s) 346, 920, 1008
BspT104I TTCGAA 1 cut(s) 421
BsrI ACTGG 2 cut(s) 640, 806
BssECI CCNNGG 6 cut(s) 245, 334, 711, 958, 996, 1100
BssMI GATC 7 cut(s) 24, 319, 338, 603, 912, 1000, 1075
BssT1I CCWWGG 1 cut(s) 996
Bst2UI CCWGG 3 cut(s) 233, 247, 335
Bst4CI ACNGT 1 cut(s) 1048
Bst6I CTCTTC 2 cut(s) 716, 1072
BstAPI GCANNNNNTGC 1 cut(s) 596
BstBI TTCGAA 1 cut(s) 421
BstC8I GCNNGC 2 cut(s) 939, 965
BstDEI CTNAG 5 cut(s) 21, 493, 793, 1137, 1154
BstDSI CCRYGG 1 cut(s) 958
BstF5I GGATG 3 cut(s) 69, 870, 925
BstFNI CGCG 1 cut(s) 283
BstKTI GATC 7 cut(s) 27, 322, 341, 606, 915, 1003, 1078
BstMAI GTCTC 3 cut(s) 148, 430, 787
BstMBI GATC 7 cut(s) 24, 319, 338, 603, 912, 1000, 1075
BstMWI GCNNNNNNNGC 4 cut(s) 567, 596, 954, 1158
BstNI CCWGG 3 cut(s) 233, 247, 335
BstNSI RCATGY 1 cut(s) 941
BstPAI GACNNNNGTC 1 cut(s) 123
BstSCI CCNGG 3 cut(s) 231, 245, 333
BstSFI CTRYAG 3 cut(s) 559, 658, 1147
BstUI CGCG 1 cut(s) 283
BstV1I GCAGC 5 cut(s) 139, 142, 419, 422, 1137
BstX2I RGATCY 2 cut(s) 912, 1000
BstYI RGATCY 2 cut(s) 912, 1000
Bsu15I ATCGAT 1 cut(s) 98
Bsu36I CCTNAGG 2 cut(s) 793, 1154
BsuI GTATCC 1 cut(s) 1162
BsuRI GGCC 4 cut(s) 8, 700, 963, 1016
BsuTUI ATCGAT 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 958
BtsCI GGATG 3 cut(s) 69, 870, 925
BtsI GCAGTG 2 cut(s) 568, 995
BtsIMutI CAGTG 2 cut(s) 568, 995
Cac8I GCNNGC 2 cut(s) 939, 965
Cfr13I GGNCC 4 cut(s) 229, 278, 398, 1015
ClaI ATCGAT 1 cut(s) 98
CviAII CATG 8 cut(s) 28, 292, 392, 601, 808, 938, 974, 1009
DdeI CTNAG 5 cut(s) 21, 493, 793, 1137, 1154
DpnI GATC 7 cut(s) 26, 321, 340, 605, 914, 1002, 1077
DpnII GATC 7 cut(s) 24, 319, 338, 603, 912, 1000, 1075
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 716, 1072
EarI CTCTTC 2 cut(s) 716, 1072
Ecl136II GAGCTC 1 cut(s) 502
Eco130I CCWWGG 1 cut(s) 996
Eco24I GRGCYC 1 cut(s) 504
Eco47I GGWCC 3 cut(s) 229, 278, 398
Eco53kI GAGCTC 1 cut(s) 502
Eco57I CTGAAG 1 cut(s) 423
Eco81I CCTNAGG 2 cut(s) 793, 1154
Eco88I CYCGRG 3 cut(s) 503, 786, 1101
EcoICRI GAGCTC 1 cut(s) 502
EcoO109I RGGNCCY 2 cut(s) 398, 1015
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 3 cut(s) 231, 245, 333
EcoT14I CCWWGG 1 cut(s) 996
EcoT38I GRGCYC 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 996
FaeI CATG 8 cut(s) 31, 295, 395, 604, 811, 941, 977, 1012
FalI AAGNNNNNCTT 2 cut(s) 559, 591
FaqI GGGAC 3 cut(s) 595, 670, 818
FatI CATG 8 cut(s) 27, 291, 391, 600, 807, 937, 973, 1008
FauI CCCGC 1 cut(s) 1074
FbaI TGATCA 1 cut(s) 1075
FblI GTMKAC 1 cut(s) 537
Fnu4HI GCNGC 7 cut(s) 153, 156, 408, 411, 968, 971, 1126
FokI GGATG 3 cut(s) 76, 877, 932
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 7 cut(s) 153, 156, 408, 411, 968, 971, 1126
FspBI CTAG 1 cut(s) 471
GluI GCNGC 7 cut(s) 153, 156, 408, 411, 968, 971, 1126
HaeIII GGCC 4 cut(s) 8, 700, 963, 1016
Hin1II CATG 8 cut(s) 31, 295, 395, 604, 811, 941, 977, 1012
HinfI GANTC 1 cut(s) 438
HphI GGTGA 5 cut(s) 86, 650, 809, 825, 1086
Hpy166II GTNNAC 1 cut(s) 538
Hpy188I TCNGA 4 cut(s) 208, 496, 715, 765
Hpy188III TCNNGA 6 cut(s) 134, 218, 505, 786, 1073, 1103
Hpy8I GTNNAC 1 cut(s) 538
HpyAV CCTTC 3 cut(s) 606, 658, 1028
HpyCH4III ACNGT 1 cut(s) 1048
HpyCH4IV ACGT 2 cut(s) 42, 1031
HpyCH4V TGCA 4 cut(s) 95, 561, 660, 1125
HpyF10VI GCNNNNNNNGC 4 cut(s) 567, 596, 954, 1158
HpyF3I CTNAG 5 cut(s) 21, 493, 793, 1137, 1154
HpySE526I ACGT 2 cut(s) 42, 1031
Hsp92II CATG 8 cut(s) 31, 295, 395, 604, 811, 941, 977, 1012
Ksp22I TGATCA 1 cut(s) 1075
Kzo9I GATC 7 cut(s) 24, 319, 338, 603, 912, 1000, 1075
LmnI GCTCC 4 cut(s) 220, 255, 499, 1158
Lsp1109I GCAGC 5 cut(s) 139, 142, 419, 422, 1137
LweI GCATC 1 cut(s) 104
MaeI CTAG 1 cut(s) 471
MaeII ACGT 2 cut(s) 42, 1031
MaeIII GTNAC 1 cut(s) 797
MalI GATC 7 cut(s) 26, 321, 340, 605, 914, 1002, 1077
MboI GATC 7 cut(s) 24, 319, 338, 603, 912, 1000, 1075
MboII GAAGA 8 cut(s) 95, 308, 318, 567, 733, 743, 893, 1059
MfeI CAATTG 1 cut(s) 675
MflI RGATCY 2 cut(s) 912, 1000
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 7 cut(s) 137, 236, 457, 486, 675, 734, 1050
MlyI GAGTC 1 cut(s) 432
MmeI TCCRAC 1 cut(s) 1146
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 5 cut(s) 161, 186, 480, 593, 872
MspA1I CMGCKG 3 cut(s) 194, 227, 1081
MspR9I CCNGG 3 cut(s) 233, 247, 335
MunI CAATTG 1 cut(s) 675
MvaI CCWGG 3 cut(s) 233, 247, 335
MvnI CGCG 1 cut(s) 283
MwoI GCNNNNNNNGC 4 cut(s) 567, 596, 954, 1158
NdeII GATC 7 cut(s) 24, 319, 338, 603, 912, 1000, 1075
NlaIII CATG 8 cut(s) 31, 295, 395, 604, 811, 941, 977, 1012
NlaIV GGNNCC 3 cut(s) 216, 251, 1086
NmuCI GTSAC 1 cut(s) 797
NspI RCATGY 1 cut(s) 941
NspV TTCGAA 1 cut(s) 421
PaeI GCATGC 1 cut(s) 941
PaeR7I CTCGAG 1 cut(s) 503
PdmI GAANNNNTTC 1 cut(s) 240
PkrI GCNGC 7 cut(s) 154, 157, 409, 412, 969, 972, 1127
PleI GAGTC 1 cut(s) 432
PpsI GAGTC 1 cut(s) 432
PpuMI RGGWCCY 1 cut(s) 398
PshAI GACNNNNGTC 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 504
Psp1406I AACGTT 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 3 cut(s) 231, 245, 333
PspGI CCWGG 3 cut(s) 231, 245, 333
PspN4I GGNNCC 3 cut(s) 216, 251, 1086
PspPI GGNCC 4 cut(s) 229, 278, 398, 1015
PspPPI RGGWCCY 1 cut(s) 398
PstI CTGCAG 2 cut(s) 563, 662
PsuI RGATCY 2 cut(s) 912, 1000
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 5 cut(s) 161, 186, 480, 593, 872
SatI GCNGC 7 cut(s) 153, 156, 408, 411, 968, 971, 1126
Sau3AI GATC 7 cut(s) 24, 319, 338, 603, 912, 1000, 1075
Sau96I GGNCC 4 cut(s) 229, 278, 398, 1015
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 3 cut(s) 233, 247, 335
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 1 cut(s) 104
SfcI CTRYAG 3 cut(s) 559, 658, 1147
Sfr274I CTCGAG 1 cut(s) 503
SfuI TTCGAA 1 cut(s) 421
SinI GGWCC 3 cut(s) 229, 278, 398
SlaI CTCGAG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SphI GCATGC 1 cut(s) 941
Sse9I AATT 7 cut(s) 137, 236, 457, 486, 675, 734, 1050
SsiI CCGC 8 cut(s) 35, 194, 227, 281, 941, 967, 970, 1081
SspMI CTAG 1 cut(s) 471
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 3 cut(s) 231, 245, 333
StyI CCWWGG 1 cut(s) 996
TaaI ACNGT 1 cut(s) 1048
TaiI ACGT 2 cut(s) 45, 1034
TaqI TCGA 5 cut(s) 98, 167, 421, 504, 646
TaqII GACCGA 1 cut(s) 135
TasI AATT 7 cut(s) 137, 236, 457, 486, 675, 734, 1050
TauI GCSGC 2 cut(s) 970, 973
Tru1I TTAA 5 cut(s) 161, 186, 480, 593, 872
Tru9I TTAA 5 cut(s) 161, 186, 480, 593, 872
TscAI CASTG 2 cut(s) 568, 995
TseFI GTSAC 1 cut(s) 797
TseI GCWGC 5 cut(s) 152, 155, 407, 410, 1125
Tsp45I GTSAC 1 cut(s) 797
TspDTI ATGAA 3 cut(s) 315, 518, 824
TspGWI ACGGA 6 cut(s) 242, 402, 506, 733, 848, 1123
TspRI CASTG 2 cut(s) 568, 995
VpaK11BI GGWCC 3 cut(s) 229, 278, 398
XapI RAATTY 3 cut(s) 137, 236, 486
XceI RCATGY 1 cut(s) 941
XhoI CTCGAG 1 cut(s) 503
XmiI GTMKAC 1 cut(s) 537
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.