Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0007163

Physical Location & Seq

Genomic Coordinates Forward (+)

48525772 .. 48527127

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG334900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCAATGACCACCGTGGCTTCCAGTCCATTTTTGTTATCCAAATCCCGTCCTTGCTCTTGTACTAATTACAAGAGGGGATTCCCACTTAGAGTTGCAGCTGTTGCTTCAATCCCATTTCAACAACCCATCAACGTGGACTACCTGGAACAAGAGTTCAGTGGCCGTGGAGTGGTATTCAAAGGCATTGGTGACGATTGCGTTGCCAAGATGAGTCTTGATAATGGCAGCAAAGCCATCTTGATGCTGCCAACTGGCCTAATCGCGTCCTACAAAGCCTCCATGTGGCATGGTGGCACTGTTGAGTTGCTCCAATCTTCAGTCTCCCAAGAAGAAGAAGAAGAAGCCAATAGCATCCGAGGAGGGGTGTCTGTGGCTTTGGAATGTCTCAGTCTCAGTCTCGATCAAGAACAAGTTTCATGGTCTCCAAGTAATTGGGCTCTTCATGACATCACAGGAAATCCTCATGACTCTATTCAGGTAGAACTGATCAGCACTGATTCCCATGACATGGTTCAAGTCAAGTACATTGTGACTCTCCAAGACGACGTCCTAATCTCACAGCTTATGGTCTGTAATAACTCTGATTCTTCGTCACTCCAACTAAGTGGGTGTATTTTAAGCCATCTGACAGTAAGCTCACCAGACGCTACTTACGCTGTTGGTTTGGAAAGATCAGATTTCTTTGGCAGGTTACCCATTTTGACAGGTTCAGCTATAATTCCTCCAGATTGTGGCCAGAAAAGTGAATCTCAATTCAGCCAACTATGGAAACAAATGACATCCAATGGTTGGGGTCCTAAGAATGGCCACCAAACAGAAACTGAACAAGAAGAAGAAATGGAGGAAGGGGAAGAAGATGACAATTATAAGAACTTAAGGGAGCAAATGTGTCGAATATACACCAGTGCACCTCGAGACTTCACAATCATTGACAGGGGTAGACGAAACTCAGTGGTGGTTGGAAGAGATGGGTTTGAAGAGCTATACATGTTCAGCCCTGGCTCAAGTCATGAATTCTACGGCGAATATGCTTATATCTGCATTGGCCAGTCGGCAGTGCTCAATCCAATAATCTTGGGGCCTAAGGAATCATGGACAGGTGGACAGCGCTTACACAATCCAAATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015979 GO:0016020 GO:0019222 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0055114 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

377

Amino Acids

41.55

Weight (kDa)

4.72

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55370 AT1G55370
fragaria_vesca	FvH4_1g28070 FvH4_1g28070 FvH4_4g18560 FvH4_4g18560
malus_domestica	MD14G1002400.v1.1
prunus_persica	Prupe.7G003600_v2.0.a1
pyrus_communis	pycom49g00190
rosa_chinensis	RchiOBHm_Chr3g0497181
rosa_laevigata	RLG00000000831 RLG00000022473
rosa_multiflora	Rmu_sc0002276.1_g000005 Rmu_sc0002893.1_g000013 Rmu_sc0007568.1_g000002 Rmu_ssc0000474.1_g000020
rosa_roxburghii	Rroxscaffold_6G00388300
rosa_rugosa	Rorug03G0291600
rosa_samantha	Rh3AG334900 Rh3BG372600 Rh3CG369000 Rh3DG369900 Rh7CG503300 Rh7DG471700
rosa_wichuraiana	Rw3G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	870
AatII	GACGTC	1 cut(s)	552
Acc36I	ACCTGC	1 cut(s)	681
AccB7I	CCANNNNNTGG	3 cut(s)	511, 734, 792
AccI	GTMKAC	1 cut(s)	943
AccII	CGCG	1 cut(s)	266
AcoI	YGGCCR	4 cut(s)	163, 736, 808, 1048
AcsI	RAATTY	1 cut(s)	1016
AcuI	CTGAAG	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	549
AfaI	GTAC	2 cut(s)	64, 527
AfeI	AGCGCT	1 cut(s)	1112
AfiI	CCNNNNNNNGG	7 cut(s)	172, 285, 364, 511, 734, 792, 806
AflII	CTTAAG	1 cut(s)	877
AflIII	ACRYGT	1 cut(s)	990
AgsI	TTSAA	5 cut(s)	111, 122, 181, 518, 980
AjnI	CCWGG	2 cut(s)	144, 1000
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
AluBI	AGCT	5 cut(s)	101, 565, 639, 716, 985
AluI	AGCT	5 cut(s)	101, 565, 639, 716, 985
Alw21I	GWGCWC	2 cut(s)	913, 1065
Alw26I	GTCTC	6 cut(s)	328, 392, 398, 404, 429, 912
Alw44I	GTGCAC	1 cut(s)	909
AlwNI	CAGNNNCTG	1 cut(s)	824
Ama87I	CYCGRG	1 cut(s)	915
Aor51HI	AGCGCT	1 cut(s)	1112
AoxI	GGCC	6 cut(s)	163, 256, 736, 808, 1048, 1082
ApaLI	GTGCAC	1 cut(s)	909
ApeKI	GCWGC	3 cut(s)	98, 228, 247
ApoI	RAATTY	1 cut(s)	1016
AspLEI	GCGC	1 cut(s)	1113
AspS9I	GGNCC	2 cut(s)	797, 1082
AsuHPI	GGTGA	2 cut(s)	203, 633
AvaI	CYCGRG	1 cut(s)	915
AvaII	GGWCC	1 cut(s)	797
AxyI	CCTNAGG	1 cut(s)	1086
BaeGI	GKGCMC	1 cut(s)	913
BalI	TGGCCA	3 cut(s)	738, 810, 1050
BanII	GRGCYC	1 cut(s)	442
Bbv12I	GWGCWC	2 cut(s)	913, 1065
BbvI	GCAGC	3 cut(s)	110, 234, 240
BccI	CCATC	4 cut(s)	137, 245, 633, 965
BceAI	ACGGC	2 cut(s)	150, 1039
BcgI	CGANNNNNNTGC	4 cut(s)	185, 219, 875, 909
BciT130I	CCWGG	2 cut(s)	146, 1002
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	6 cut(s)	328, 392, 398, 404, 429, 912
BfoI	RGCGCY	1 cut(s)	1114
BfrI	CTTAAG	1 cut(s)	877
BfuAI	ACCTGC	1 cut(s)	681
BisI	GCNGC	3 cut(s)	99, 229, 248
BlsI	GCNGC	3 cut(s)	100, 230, 249
Bme1390I	CCNGG	2 cut(s)	146, 1002
Bme18I	GGWCC	1 cut(s)	797
BmeT110I	CYCGRG	1 cut(s)	915
BmgT120I	GGNCC	2 cut(s)	797, 1082
BmiI	GGNNCC	2 cut(s)	798, 1083
BmrFI	CCNGG	2 cut(s)	146, 1002
BmsI	GCATC	2 cut(s)	234, 363
BpmI	CTGGAG	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	991
BsaHI	GRCGYC	1 cut(s)	549
BsaI	GGTCTC	1 cut(s)	429
BsaJI	CCNNGG	4 cut(s)	15, 166, 358, 1000
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 293, 875, 905
Bsc4I	CCNNNNNNNGG	7 cut(s)	172, 285, 364, 511, 734, 792, 806
Bse1I	ACTGG	4 cut(s)	24, 259, 906, 1051
Bse21I	CCTNAGG	1 cut(s)	1086
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	146, 1002
BseDI	CCNNGG	4 cut(s)	15, 166, 358, 1000
BseGI	GGATG	2 cut(s)	354, 782
BseLI	CCNNNNNNNGG	7 cut(s)	172, 285, 364, 511, 734, 792, 806
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	3 cut(s)	403, 409, 966
BseNI	ACTGG	4 cut(s)	24, 259, 906, 1051
BseRI	GAGGAG	1 cut(s)	375
BseSI	GKGCMC	1 cut(s)	913
BseXI	GCAGC	3 cut(s)	110, 234, 240
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	6 cut(s)	165, 258, 738, 810, 1050, 1084
BsiHKAI	GWGCWC	2 cut(s)	913, 1065
BsiHKCI	CYCGRG	1 cut(s)	915
BslI	CCNNNNNNNGG	7 cut(s)	172, 285, 364, 511, 734, 792, 806
BsmAI	GTCTC	6 cut(s)	328, 392, 398, 404, 429, 912
BsnI	GGCC	6 cut(s)	165, 258, 738, 810, 1050, 1084
Bso31I	GGTCTC	1 cut(s)	429
BsoBI	CYCGRG	1 cut(s)	915
Bsp1286I	GDGCHC	3 cut(s)	442, 913, 1065
Bsp143I	GATC	3 cut(s)	403, 489, 674
BspANI	GGCC	6 cut(s)	165, 258, 738, 810, 1050, 1084
BspCNI	CTCAG	3 cut(s)	402, 408, 965
BspFNI	CGCG	1 cut(s)	266
BspHI	TCATGA	3 cut(s)	445, 466, 1012
BspLI	GGNNCC	2 cut(s)	798, 1083
BspMI	ACCTGC	1 cut(s)	681
BspQI	GCTCTTC	2 cut(s)	447, 975
BspTI	CTTAAG	1 cut(s)	877
BspTNI	GGTCTC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	4 cut(s)	24, 259, 906, 1051
BssECI	CCNNGG	4 cut(s)	15, 166, 358, 1000
BssMI	GATC	3 cut(s)	403, 489, 674
BssNI	GRCGYC	1 cut(s)	549
Bst2UI	CCWGG	2 cut(s)	146, 1002
Bst4CI	ACNGT	3 cut(s)	16, 301, 634
Bst6I	CTCTTC	3 cut(s)	447, 961, 975
BstACI	GRCGYC	1 cut(s)	549
BstAFI	CTTAAG	1 cut(s)	877
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstDEI	CTNAG	7 cut(s)	89, 389, 395, 605, 801, 952, 1086
BstDSI	CCRYGG	2 cut(s)	15, 166
BstEII	GGTNACC	1 cut(s)	693
BstF5I	GGATG	2 cut(s)	354, 782
BstFNI	CGCG	1 cut(s)	266
BstH2I	RGCGCY	1 cut(s)	1114
BstHHI	GCGC	1 cut(s)	1113
BstKTI	GATC	3 cut(s)	406, 492, 677
BstMAI	GTCTC	6 cut(s)	328, 392, 398, 404, 429, 912
BstMBI	GATC	3 cut(s)	403, 489, 674
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 656
BstNI	CCWGG	2 cut(s)	146, 1002
BstNSI	RCATGY	1 cut(s)	994
BstPI	GGTNACC	1 cut(s)	693
BstSCI	CCNGG	2 cut(s)	144, 1000
BstSLI	GKGCMC	1 cut(s)	913
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	3 cut(s)	110, 234, 240
BstXI	CCANNNNNNTGG	3 cut(s)	136, 435, 608
Bsu36I	CCTNAGG	1 cut(s)	1086
BsuRI	GGCC	6 cut(s)	165, 258, 738, 810, 1050, 1084
BtgI	CCRYGG	2 cut(s)	15, 166
BtsCI	GGATG	2 cut(s)	354, 782
BtsI	GCAGTG	1 cut(s)	1065
BtsIMutI	CAGTG	6 cut(s)	166, 297, 495, 913, 960, 1065
BveI	ACCTGC	1 cut(s)	681
CaiI	CAGNNNCTG	1 cut(s)	824
CciI	TCATGA	3 cut(s)	445, 466, 1012
CfoI	GCGC	1 cut(s)	1113
Cfr13I	GGNCC	2 cut(s)	797, 1082
CseI	GACGC	2 cut(s)	255, 656
Csp6I	GTAC	2 cut(s)	63, 526
CviQI	GTAC	2 cut(s)	63, 526
DdeI	CTNAG	7 cut(s)	89, 389, 395, 605, 801, 952, 1086
DpnI	GATC	3 cut(s)	405, 491, 676
DpnII	GATC	3 cut(s)	403, 489, 674
EaeI	YGGCCR	4 cut(s)	163, 736, 808, 1048
Eam1104I	CTCTTC	3 cut(s)	447, 961, 975
EarI	CTCTTC	3 cut(s)	447, 961, 975
Eco24I	GRGCYC	1 cut(s)	442
Eco31I	GGTCTC	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	797
Eco47III	AGCGCT	1 cut(s)	1112
Eco57I	CTGAAG	1 cut(s)	303
Eco81I	CCTNAGG	1 cut(s)	1086
Eco88I	CYCGRG	1 cut(s)	915
Eco91I	GGTNACC	1 cut(s)	693
EcoO109I	RGGNCCY	2 cut(s)	797, 1082
EcoO65I	GGTNACC	1 cut(s)	693
EcoRI	GAATTC	1 cut(s)	1016
EcoRII	CCWGG	2 cut(s)	144, 1000
EcoT38I	GRGCYC	1 cut(s)	442
FbaI	TGATCA	1 cut(s)	489
FblI	GTMKAC	1 cut(s)	943
Fnu4HI	GCNGC	3 cut(s)	99, 229, 248
FokI	GGATG	2 cut(s)	341, 769
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	3 cut(s)	99, 229, 248
GlaI	GCGC	1 cut(s)	1112
GluI	GCNGC	3 cut(s)	99, 229, 248
GsuI	CTGGAG	1 cut(s)	711
HaeII	RGCGCY	1 cut(s)	1114
HaeIII	GGCC	6 cut(s)	165, 258, 738, 810, 1050, 1084
HgaI	GACGC	2 cut(s)	255, 656
HhaI	GCGC	1 cut(s)	1113
Hin1I	GRCGYC	1 cut(s)	549
Hin6I	GCGC	1 cut(s)	1111
HinP1I	GCGC	1 cut(s)	1111
HinfI	GANTC	8 cut(s)	81, 214, 470, 500, 535, 587, 749, 1091
HphI	GGTGA	2 cut(s)	203, 633
Hpy166II	GTNNAC	4 cut(s)	139, 911, 944, 1106
Hpy188I	TCNGA	4 cut(s)	359, 586, 630, 679
Hpy188III	TCNNGA	9 cut(s)	218, 241, 401, 407, 446, 467, 728, 917, 1013
Hpy8I	GTNNAC	4 cut(s)	139, 911, 944, 1106
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	1 cut(s)	842
HpyCH4III	ACNGT	3 cut(s)	16, 301, 634
HpyCH4IV	ACGT	2 cut(s)	135, 549
HpyCH4V	TGCA	3 cut(s)	98, 911, 1044
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 656
HpyF3I	CTNAG	7 cut(s)	89, 389, 395, 605, 801, 952, 1086
HpySE526I	ACGT	2 cut(s)	135, 549
Hsp92I	GRCGYC	1 cut(s)	549
HspAI	GCGC	1 cut(s)	1111
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	3 cut(s)	403, 489, 674
LguI	GCTCTTC	2 cut(s)	447, 975
LmnI	GCTCC	2 cut(s)	315, 883
Lsp1109I	GCAGC	3 cut(s)	110, 234, 240
LweI	GCATC	2 cut(s)	234, 363
MaeII	ACGT	2 cut(s)	135, 549
MaeIII	GTNAC	4 cut(s)	191, 532, 594, 693
MalI	GATC	3 cut(s)	405, 491, 676
MboI	GATC	3 cut(s)	403, 489, 674
MhlI	GDGCHC	3 cut(s)	442, 913, 1065
MlsI	TGGCCA	3 cut(s)	738, 810, 1050
MluCI	AATT	6 cut(s)	67, 433, 720, 755, 865, 1016
MluNI	TGGCCA	3 cut(s)	738, 810, 1050
MlyI	GAGTC	3 cut(s)	223, 464, 529
MmeI	TCCRAC	2 cut(s)	625, 943
MnlI	CCTC	8 cut(s)	69, 289, 353, 356, 474, 735, 838, 924
Mox20I	TGGCCA	3 cut(s)	738, 810, 1050
MscI	TGGCCA	3 cut(s)	738, 810, 1050
MseI	TTAA	2 cut(s)	620, 878
MslI	CAYNNNNRTG	2 cut(s)	134, 242
Msp20I	TGGCCA	3 cut(s)	738, 810, 1050
MspA1I	CMGCKG	1 cut(s)	101
MspCI	CTTAAG	1 cut(s)	877
MspR9I	CCNGG	2 cut(s)	146, 1002
MvaI	CCWGG	2 cut(s)	146, 1002
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	104, 656
NdeII	GATC	3 cut(s)	403, 489, 674
NlaIV	GGNNCC	2 cut(s)	798, 1083
NmuCI	GTSAC	3 cut(s)	191, 532, 594
NspI	RCATGY	1 cut(s)	994
PaeR7I	CTCGAG	1 cut(s)	915
PagI	TCATGA	3 cut(s)	445, 466, 1012
PciI	ACATGT	1 cut(s)	990
PciSI	GCTCTTC	2 cut(s)	447, 975
PfeI	GAWTC	5 cut(s)	81, 500, 587, 749, 1091
PflFI	GACNNNGTC	1 cut(s)	548
PflMI	CCANNNNNTGG	3 cut(s)	511, 734, 792
PkrI	GCNGC	3 cut(s)	100, 230, 249
PleI	GAGTC	3 cut(s)	222, 464, 529
PpsI	GAGTC	3 cut(s)	222, 464, 529
PpuMI	RGGWCCY	1 cut(s)	797
PscI	ACATGT	1 cut(s)	990
PsiI	TTATAA	1 cut(s)	870
Psp5II	RGGWCCY	1 cut(s)	797
Psp6I	CCWGG	2 cut(s)	144, 1000
PspEI	GGTNACC	1 cut(s)	693
PspGI	CCWGG	2 cut(s)	144, 1000
PspN4I	GGNNCC	2 cut(s)	798, 1083
PspPI	GGNCC	2 cut(s)	797, 1082
PspPPI	RGGWCCY	1 cut(s)	797
PstNI	CAGNNNCTG	1 cut(s)	824
PsyI	GACNNNGTC	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	2 cut(s)	64, 527
RsaNI	GTAC	2 cut(s)	63, 526
RseI	CAYNNNNRTG	2 cut(s)	134, 242
SapI	GCTCTTC	2 cut(s)	447, 975
SaqAI	TTAA	2 cut(s)	620, 878
SatI	GCNGC	3 cut(s)	99, 229, 248
Sau3AI	GATC	3 cut(s)	403, 489, 674
Sau96I	GGNCC	2 cut(s)	797, 1082
SchI	GAGTC	3 cut(s)	223, 464, 529
ScrFI	CCNGG	2 cut(s)	146, 1002
SduI	GDGCHC	3 cut(s)	442, 913, 1065
SfaNI	GCATC	2 cut(s)	234, 363
Sfr274I	CTCGAG	1 cut(s)	915
SinI	GGWCC	1 cut(s)	797
SlaI	CTCGAG	1 cut(s)	915
SmiMI	CAYNNNNRTG	2 cut(s)	134, 242
SmlI	CTYRAG	3 cut(s)	877, 915, 1006
SmoI	CTYRAG	3 cut(s)	877, 915, 1006
Sse9I	AATT	6 cut(s)	67, 433, 720, 755, 865, 1016
StyD4I	CCNGG	2 cut(s)	144, 1000
TaaI	ACNGT	3 cut(s)	16, 301, 634
TaiI	ACGT	2 cut(s)	138, 552
TaqI	TCGA	3 cut(s)	402, 895, 916
TasI	AATT	6 cut(s)	67, 433, 720, 755, 865, 1016
TatI	WGTACW	2 cut(s)	62, 525
TfiI	GAWTC	5 cut(s)	81, 500, 587, 749, 1091
Tru1I	TTAA	2 cut(s)	620, 878
Tru9I	TTAA	2 cut(s)	620, 878
TscAI	CASTG	6 cut(s)	166, 304, 502, 913, 960, 1065
TseFI	GTSAC	3 cut(s)	191, 532, 594
TseI	GCWGC	3 cut(s)	98, 228, 247
Tsp45I	GTSAC	3 cut(s)	191, 532, 594
TspDTI	ATGAA	3 cut(s)	408, 434, 1029
TspRI	CASTG	6 cut(s)	166, 304, 502, 913, 960, 1065
Tth111I	GACNNNGTC	1 cut(s)	548
Van91I	CCANNNNNTGG	3 cut(s)	511, 734, 792
Vha464I	CTTAAG	1 cut(s)	877
VneI	GTGCAC	1 cut(s)	909
VpaK11BI	GGWCC	1 cut(s)	797
XapI	RAATTY	1 cut(s)	1016
XceI	RCATGY	1 cut(s)	994
XhoI	CTCGAG	1 cut(s)	915
XmiI	GTMKAC	1 cut(s)	943
ZraI	GACGTC	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.