Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007163

Physical Location & Seq

Genomic Coordinates Reverse (-)

68119250 .. 68119765

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG503300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGACATCAACAATATTGGTGGAGGAAACATGCCATCAACAACCGCCTCCGACTTGGAAATCTCGTCGGACCCAACTTCGACACTCGGCCAGTTGCATCTTTATATCATTGCTTGGTTTTCAATCAAGTAGAAGAGGGGATTTGTTTGGTCCATCTTTGAATCGGAAAGCACATGGCAATGACCTCCATGGCTTCCAGTCCCTTTTTGTTATCCAAATCTCGCCTTGCTCTTGTACTAATTACAATAAGAAGGGATTCCCACTTAGACTTGCCGTTGTTATTTCAATCCCATTTCAACAACCCATCAACGGGGACTACCTGGAACAAGAGTTCAGTGGCCATGGAGTCATATTCAAAGGCATTGGTGCCGATTGCGTTGCCAAGATGAGTCTTGATAACGGTAGCAAAGCCATCTTGATGCTGCCAAGTGGCCTAATCACATCCTACAAAGCCTCCATGTCGCATGGTGGCACTGTTGAGTTGCTCCAATCTTCAGTCTCCCAAGAAGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015979 GO:0016020 GO:0019222 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0055114 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.73

Weight (kDa)

8.31

Isoelectric Point (pI)

65.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55370 AT1G55370
fragaria_vesca	FvH4_1g28070 FvH4_1g28070 FvH4_4g18560 FvH4_4g18560
malus_domestica	MD14G1002400.v1.1
prunus_persica	Prupe.7G003600_v2.0.a1
pyrus_communis	pycom49g00190
rosa_chinensis	RchiOBHm_Chr3g0497181
rosa_laevigata	RLG00000000831 RLG00000022473
rosa_multiflora	Rmu_sc0002276.1_g000005 Rmu_sc0002893.1_g000013 Rmu_sc0007568.1_g000002 Rmu_ssc0000474.1_g000020
rosa_roxburghii	Rroxscaffold_6G00388300
rosa_rugosa	Rorug03G0291600
rosa_samantha	Rh3AG334900 Rh3BG372600 Rh3CG369000 Rh3DG369900 Rh7CG503300 Rh7DG471700
rosa_wichuraiana	Rw3G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	365
AciI	CCGC	1 cut(s)	44
AcoI	YGGCCR	2 cut(s)	87, 337
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	308, 309
AgsI	TTSAA	5 cut(s)	122, 160, 285, 296, 355
AjnI	CCWGG	1 cut(s)	318
AloI	GAACNNNNNNTCC	2 cut(s)	314, 346
Alw26I	GTCTC	1 cut(s)	502
AoxI	GGCC	3 cut(s)	87, 337, 430
ApeKI	GCWGC	1 cut(s)	421
Asp700I	GAANNNNTTC	1 cut(s)	254
AspS9I	GGNCC	2 cut(s)	69, 149
AvaII	GGWCC	2 cut(s)	69, 149
BalI	TGGCCA	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	4 cut(s)	42, 160, 311, 419
BceAI	ACGGC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	502
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	2 cut(s)	69, 149
BmgT120I	GGNCC	2 cut(s)	69, 149
BmiI	GGNNCC	2 cut(s)	71, 367
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	2 cut(s)	105, 408
BsaJI	CCNNGG	2 cut(s)	187, 340
BsaXI	ACNNNNNCTCC	2 cut(s)	437, 467
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 309
Bse1I	ACTGG	2 cut(s)	90, 196
Bse3DI	GCAATG	2 cut(s)	107, 184
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	187, 340
BseGI	GGATG	1 cut(s)	440
BseLI	CCNNNNNNNGG	2 cut(s)	308, 309
BseMI	GCAATG	2 cut(s)	107, 184
BseNI	ACTGG	2 cut(s)	90, 196
BseXI	GCAGC	1 cut(s)	408
BshFI	GGCC	3 cut(s)	89, 339, 432
BshNI	GGYRCC	1 cut(s)	365
BslFI	GGGAC	2 cut(s)	184, 326
BslI	CCNNNNNNNGG	2 cut(s)	308, 309
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	2 cut(s)	184, 326
BsnI	GGCC	3 cut(s)	89, 339, 432
Bsp19I	CCATGG	2 cut(s)	187, 340
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	3 cut(s)	89, 339, 432
BspLI	GGNNCC	2 cut(s)	71, 367
BspT107I	GGYRCC	1 cut(s)	365
BsrDI	GCAATG	2 cut(s)	107, 184
BsrI	ACTGG	2 cut(s)	90, 196
BssECI	CCNNGG	2 cut(s)	187, 340
BssT1I	CCWWGG	2 cut(s)	187, 340
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	2 cut(s)	401, 475
Bst6I	CTCTTC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	263
BstDSI	CCRYGG	2 cut(s)	187, 340
BstF5I	GGATG	1 cut(s)	440
BstMAI	GTCTC	1 cut(s)	502
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	89, 339, 432
BtgI	CCRYGG	2 cut(s)	187, 340
BtsCI	GGATG	1 cut(s)	440
BtsIMutI	CAGTG	2 cut(s)	340, 471
Cfr13I	GGNCC	2 cut(s)	69, 149
Csp6I	GTAC	1 cut(s)	234
CspCI	CAANNNNNGTGG	1 cut(s)	35
CviAII	CATG	6 cut(s)	30, 173, 188, 341, 457, 464
CviJI	RGCY	6 cut(s)	89, 192, 339, 410, 432, 452
CviKI_1	RGCY	6 cut(s)	89, 192, 339, 410, 432, 452
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	1 cut(s)	263
EaeI	YGGCCR	2 cut(s)	87, 337
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	187, 340
Eco47I	GGWCC	2 cut(s)	69, 149
Eco57I	CTGAAG	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	2 cut(s)	187, 340
ErhI	CCWWGG	2 cut(s)	187, 340
FaeI	CATG	6 cut(s)	33, 176, 191, 344, 460, 467
FaiI	YATR	8 cut(s)	31, 104, 174, 189, 342, 350, 458, 465
FaqI	GGGAC	2 cut(s)	184, 326
FatI	CATG	6 cut(s)	29, 172, 187, 340, 456, 463
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	1 cut(s)	427
Fsp4HI	GCNGC	1 cut(s)	422
GluI	GCNGC	1 cut(s)	422
HaeIII	GGCC	3 cut(s)	89, 339, 432
Hin1II	CATG	6 cut(s)	33, 176, 191, 344, 460, 467
HinfI	GANTC	4 cut(s)	160, 255, 345, 388
Hpy188I	TCNGA	3 cut(s)	51, 69, 165
Hpy188III	TCNNGA	2 cut(s)	392, 415
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	2 cut(s)	401, 475
HpyCH4V	TGCA	1 cut(s)	96
HpyF3I	CTNAG	1 cut(s)	263
Hsp92II	CATG	6 cut(s)	33, 176, 191, 344, 460, 467
LmnI	GCTCC	1 cut(s)	489
LpnPI	CCDG	4 cut(s)	103, 209, 305, 332
Lsp1109I	GCAGC	1 cut(s)	408
LweI	GCATC	2 cut(s)	105, 408
MboII	GAAGA	2 cut(s)	144, 483
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	1 cut(s)	238
MluNI	TGGCCA	1 cut(s)	339
MlyI	GAGTC	2 cut(s)	354, 397
MmeI	TCCRAC	2 cut(s)	47, 74
MnlI	CCTC	5 cut(s)	16, 57, 128, 194, 463
Mox20I	TGGCCA	1 cut(s)	339
MroXI	GAANNNNTTC	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	339
MslI	CAYNNNNRTG	2 cut(s)	177, 416
Msp20I	TGGCCA	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
NcoI	CCATGG	2 cut(s)	187, 340
NlaIII	CATG	6 cut(s)	33, 176, 191, 344, 460, 467
NlaIV	GGNNCC	2 cut(s)	71, 367
NmeAIII	GCCGAG	1 cut(s)	65
NspI	RCATGY	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	160, 255
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	2 cut(s)	353, 396
PpsI	GAGTC	2 cut(s)	353, 396
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	71, 367
PspPI	GGNCC	2 cut(s)	69, 149
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	2 cut(s)	177, 416
SatI	GCNGC	1 cut(s)	422
Sau96I	GGNCC	2 cut(s)	69, 149
SchI	GAGTC	2 cut(s)	354, 397
ScrFI	CCNGG	1 cut(s)	320
SetI	ASST	2 cut(s)	186, 321
SfaNI	GCATC	2 cut(s)	105, 408
SinI	GGWCC	2 cut(s)	69, 149
SmiMI	CAYNNNNRTG	2 cut(s)	177, 416
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	44
SspI	AATATT	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	2 cut(s)	187, 340
TaaI	ACNGT	2 cut(s)	401, 475
TaqI	TCGA	1 cut(s)	79
TasI	AATT	1 cut(s)	238
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	160, 255
TscAI	CASTG	2 cut(s)	340, 478
TseI	GCWGC	1 cut(s)	421
TspRI	CASTG	2 cut(s)	340, 478
VpaK11BI	GGWCC	2 cut(s)	69, 149
XceI	RCATGY	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.