Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007163

Physical Location & Seq

Genomic Coordinates Forward (+)

6152877 .. 6153936

Gene Structure 1060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000831

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCCATCAACAATATTGAAAGCACATGGCAATGACCTCCATGGCTTCCAGTCCATTTTTGTTATCCAAATCCCGCCTTGCTCTTGTACTAATTACAACAAGAGGGGATTCCCACTTAGACTTGCAGCTATTGCTTCAATCCCATTTCAACAACCCATCAATGGGGACTACCTGGAACAAGAGTTCAATGGCCACGGAGATGAATTCGCAGGCATTAGTGCTGATTGCGTAATCAAGATGAGTCTTGATAACTGCAACGAAGCCATCTTGATGCTGCCAGTAACATTTAGAGAGCTAAGTACTTTCAGGACTCCCAAAGAGAATTTCACCATCCAAGAGTTTGAATTGGGCAAGATCTATGGCGTTGATTCATATTCAAAGGTTGTGAGAGCAAGGAAGAAGGATTTAGGAATTGTCTACACATTAAAGATGGAAGTGAAAGAAGAGGAAGGGGTCTACGACACTAAGCTTCATGGGGCAGAGGAAGAAGAGGAAGGGGTCTACGACATTGAGCTTCTTGGGGCAGAGGAAGAAGAGGAAGTGGTCTACGACGGTACGACACTGACTGGGGGCGCCGGAAGCAGAGCAAGTCTGGCATTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015979 GO:0016020 GO:0019222 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0055114 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.36

Weight (kDa)

4.64

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55370 AT1G55370
fragaria_vesca	FvH4_1g28070 FvH4_1g28070 FvH4_4g18560 FvH4_4g18560
malus_domestica	MD14G1002400.v1.1
prunus_persica	Prupe.7G003600_v2.0.a1
pyrus_communis	pycom49g00190
rosa_chinensis	RchiOBHm_Chr3g0497181
rosa_laevigata	RLG00000000831 RLG00000022473
rosa_multiflora	Rmu_sc0002276.1_g000005 Rmu_sc0002893.1_g000013 Rmu_sc0007568.1_g000002 Rmu_ssc0000474.1_g000020
rosa_roxburghii	Rroxscaffold_6G00388300
rosa_rugosa	Rorug03G0291600
rosa_samantha	Rh3AG334900 Rh3BG372600 Rh3CG369000 Rh3DG369900 Rh7CG503300 Rh7DG471700
rosa_wichuraiana	Rw3G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	572
AccI	GTMKAC	4 cut(s)	417, 456, 501, 546
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	2 cut(s)	203, 322
AcyI	GRCGYC	1 cut(s)	573
AfaI	GTAC	3 cut(s)	88, 301, 556
AfiI	CCNNNNNNNGG	2 cut(s)	161, 162
AgsI	TTSAA	6 cut(s)	19, 138, 149, 187, 344, 378
AjnI	CCWGG	1 cut(s)	171
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AloI	GAACNNNNNNTCC	2 cut(s)	167, 199
AluBI	AGCT	4 cut(s)	128, 295, 469, 514
AluI	AGCT	4 cut(s)	128, 295, 469, 514
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	125, 274
ApoI	RAATTY	2 cut(s)	203, 322
AspLEI	GCGC	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	319
BalI	TGGCCA	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	572
BbvI	GCAGC	2 cut(s)	137, 261
BccI	CCATC	5 cut(s)	13, 164, 272, 338, 424
BciT130I	CCWGG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	576
BglII	AGATCT	1 cut(s)	354
BisI	GCNGC	2 cut(s)	126, 275
BlsI	GCNGC	2 cut(s)	127, 276
BmcAI	AGTACT	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	574
BmrFI	CCNGG	1 cut(s)	173
BmrI	ACTGGG	1 cut(s)	576
BmsI	GCATC	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	40, 193
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 162
Bse1I	ACTGG	3 cut(s)	49, 278, 571
Bse3DI	GCAATG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	40, 193
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	161, 162
BseMI	GCAATG	1 cut(s)	37
BseNI	ACTGG	3 cut(s)	49, 278, 571
BseXI	GCAGC	2 cut(s)	137, 261
BshFI	GGCC	1 cut(s)	192
BshNI	GGYRCC	1 cut(s)	572
BsiSI	CCGG	1 cut(s)	576
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	161, 162
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	354
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	574
BspT107I	GGYRCC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	49, 278, 571
BssECI	CCNNGG	2 cut(s)	40, 193
BssMI	GATC	1 cut(s)	354
BssNI	GRCGYC	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	554
Bst6I	CTCTTC	3 cut(s)	438, 483, 528
BstACI	GRCGYC	1 cut(s)	573
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	3 cut(s)	116, 296, 465
BstDSI	CCRYGG	2 cut(s)	40, 193
BstF5I	GGATG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	576
BstHHI	GCGC	1 cut(s)	575
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 579, 593
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	137, 261
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	192
BtgI	CCRYGG	2 cut(s)	40, 193
BtsCI	GGATG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	560
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	575
Csp6I	GTAC	3 cut(s)	87, 300, 555
CviAII	CATG	3 cut(s)	26, 41, 473
CviJI	RGCY	7 cut(s)	45, 128, 192, 263, 295, 469, 514
CviKI_1	RGCY	7 cut(s)	45, 128, 192, 263, 295, 469, 514
CviQI	GTAC	3 cut(s)	87, 300, 555
DdeI	CTNAG	3 cut(s)	116, 296, 465
DinI	GGCGCC	1 cut(s)	574
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	3 cut(s)	438, 483, 528
EarI	CTCTTC	3 cut(s)	438, 483, 528
Eco130I	CCWWGG	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	40
EgeI	GGCGCC	1 cut(s)	574
EheI	GGCGCC	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	3 cut(s)	29, 44, 476
FaiI	YATR	5 cut(s)	27, 42, 360, 373, 474
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	3 cut(s)	25, 40, 472
FauI	CCCGC	1 cut(s)	81
FblI	GTMKAC	4 cut(s)	417, 456, 501, 546
Fnu4HI	GCNGC	2 cut(s)	126, 275
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	2 cut(s)	126, 275
GlaI	GCGC	1 cut(s)	574
GluI	GCNGC	2 cut(s)	126, 275
HaeII	RGCGCY	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	576
HhaI	GCGC	1 cut(s)	575
Hin1I	GRCGYC	1 cut(s)	573
Hin1II	CATG	3 cut(s)	29, 44, 476
Hin6I	GCGC	1 cut(s)	573
HinP1I	GCGC	1 cut(s)	573
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	4 cut(s)	108, 241, 310, 368
HpaII	CCGG	1 cut(s)	576
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	4 cut(s)	418, 457, 502, 547
Hpy188III	TCNNGA	4 cut(s)	235, 245, 268, 307
Hpy8I	GTNNAC	4 cut(s)	418, 457, 502, 547
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	3 cut(s)	394, 443, 488
HpyCH4III	ACNGT	1 cut(s)	554
HpyCH4V	TGCA	2 cut(s)	125, 255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 579, 593
HpyF3I	CTNAG	3 cut(s)	116, 296, 465
Hsp92I	GRCGYC	1 cut(s)	573
Hsp92II	CATG	3 cut(s)	29, 44, 476
HspAI	GCGC	1 cut(s)	573
KasI	GGCGCC	1 cut(s)	572
Kzo9I	GATC	1 cut(s)	354
LpnPI	CCDG	9 cut(s)	62, 158, 185, 195, 291, 292, 552, 578, 589
Lsp1109I	GCAGC	2 cut(s)	137, 261
LweI	GCATC	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	6 cut(s)	409, 455, 497, 500, 542, 545
MflI	RGATCY	1 cut(s)	354
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	5 cut(s)	91, 203, 322, 344, 411
MluNI	TGGCCA	1 cut(s)	192
Mly113I	GGCGCC	1 cut(s)	573
MlyI	GAGTC	2 cut(s)	250, 304
MnlI	CCTC	7 cut(s)	47, 96, 439, 475, 484, 520, 529
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	1 cut(s)	425
MslI	CAYNNNNRTG	3 cut(s)	30, 198, 269
Msp20I	TGGCCA	1 cut(s)	192
MspI	CCGG	1 cut(s)	576
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	131, 579, 593
NarI	GGCGCC	1 cut(s)	573
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	3 cut(s)	29, 44, 476
NlaIV	GGNNCC	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	108, 368
PkrI	GCNGC	2 cut(s)	127, 276
PleI	GAGTC	2 cut(s)	249, 304
PluTI	GGCGCC	1 cut(s)	576
PpsI	GAGTC	2 cut(s)	249, 304
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	574
PsuI	RGATCY	1 cut(s)	354
RsaI	GTAC	3 cut(s)	88, 301, 556
RsaNI	GTAC	3 cut(s)	87, 300, 555
RseI	CAYNNNNRTG	3 cut(s)	30, 198, 269
SaqAI	TTAA	1 cut(s)	425
SatI	GCNGC	2 cut(s)	126, 275
Sau3AI	GATC	1 cut(s)	354
ScaI	AGTACT	1 cut(s)	301
SchI	GAGTC	2 cut(s)	250, 304
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	7 cut(s)	39, 130, 174, 297, 384, 471, 516
SfaNI	GCATC	1 cut(s)	261
SfoI	GGCGCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	3 cut(s)	30, 198, 269
Sse9I	AATT	5 cut(s)	91, 203, 322, 344, 411
SsiI	CCGC	1 cut(s)	74
SspDI	GGCGCC	1 cut(s)	572
SspI	AATATT	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	554
TasI	AATT	5 cut(s)	91, 203, 322, 344, 411
TatI	WGTACW	2 cut(s)	86, 299
TfiI	GAWTC	2 cut(s)	108, 368
Tru1I	TTAA	1 cut(s)	425
Tru9I	TTAA	1 cut(s)	425
TscAI	CASTG	1 cut(s)	567
TseI	GCWGC	2 cut(s)	125, 274
TspDTI	ATGAA	3 cut(s)	216, 360, 461
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	567
XapI	RAATTY	2 cut(s)	203, 322
XmiI	GTMKAC	4 cut(s)	417, 456, 501, 546
ZrmI	AGTACT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.