Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007163

Physical Location & Seq

Genomic Coordinates Forward (+)

46861519 .. 46862884

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG369900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCAATGACCACCGTGGCTTCCAGTCCATTTTTGTTATCCAAATCCCGCCCTTTCTCTTGTACTAATTACAACAAGAGGGGATTCCCACTTAGAGTTGCAGCTGTTGCTTCAATCCCATTTCAACAACCCATCAACGTGGACTACCTGGAACAAGAGTTCAGTGGCCGTGGAGTGGTATTCAAAGGCATTGGTGACGATTGCGTTGCCAAGATGAGTCTTGATAATGGCAGCAAAGCCATCTTGATGCTGCCAAGTGGCCTAATCGCGTCCTACAAAGCCTCCATGTGGCATGGTGGCACTGTTGAGTTGCTCCAATCTTCAGTCTCCCAAGAAGAAGAAGAAGAAGATGAAGAAGCCAATAGCATCCGAGGAGGGGTGTCTGTGGCTTTGGAATGTCTCAGTCTCAGTCTCGATCAAGAACAAGTTTCATGGTCTCCAAGTAATTGGGCTCTTCATGACATCACAGGAAATCCTCAGGACTCTATTCAGGTAGAACTGATCAGCACTGATTCCCATGACATGGTTCAAGTCAAGTACATTGTGACTCTCCAAGACGACGTCCTAATCTCACAGCTTATGGTCTCTAATAACTCAGATTCTTCGTCACTCCAACTAAGTGGGTGTATTTTAAGCCATCTGACAGTCAGCTCACCAGACGCTACTTACGCAGTTGGTTTGGAAAGATCAGATTTCTTTGGCAGGTTACCCATTTTGACAGGTTCAGCTATAATTCCTCCAGATTGTGGCCAGAAAAGTGAATCTCAATTCAGCCAACTATGGAAACAAATGACATTCAATGCTTGGGGTCCTAAGAATGGCCACCAAACAGAAACTGAACAAGAAGAAGAAATGGAGCAAGGGGAAGAAGATGACAATTATAAGAACTTAAGGGAGCAAATGTGTCGAATATACACCAGTGCGCCTCGAGACTTCACAATCATTGACAGGGGTAGACGAAACTCAGTGGTGGTTGGAAGAGATGGGTTTGAAGAGCTATACATGTTCAGCCCTGGCTCAAGTCATGAATTCTACGGCGAATATGCTTATATCTGCATTGGCCAGTCGGCAGTGCTCAATCCAATAATCTTGGGGCCTAAGGAATCATGGACAGGTGGACAGCGCTTACACAATCCAAATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015979 GO:0016020 GO:0019222 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0055114 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

381

Amino Acids

42.11

Weight (kDa)

4.62

Isoelectric Point (pI)

60.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55370 AT1G55370
fragaria_vesca	FvH4_1g28070 FvH4_1g28070 FvH4_4g18560 FvH4_4g18560
malus_domestica	MD14G1002400.v1.1
prunus_persica	Prupe.7G003600_v2.0.a1
pyrus_communis	pycom49g00190
rosa_chinensis	RchiOBHm_Chr3g0497181
rosa_laevigata	RLG00000000831 RLG00000022473
rosa_multiflora	Rmu_sc0002276.1_g000005 Rmu_sc0002893.1_g000013 Rmu_sc0007568.1_g000002 Rmu_ssc0000474.1_g000020
rosa_roxburghii	Rroxscaffold_6G00388300
rosa_rugosa	Rorug03G0291600
rosa_samantha	Rh3AG334900 Rh3BG372600 Rh3CG369000 Rh3DG369900 Rh7CG503300 Rh7DG471700
rosa_wichuraiana	Rw3G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	882
AatII	GACGTC	1 cut(s)	564
Acc36I	ACCTGC	1 cut(s)	693
AccB7I	CCANNNNNTGG	2 cut(s)	523, 746
AccI	GTMKAC	1 cut(s)	955
AccII	CGCG	1 cut(s)	269
AciI	CCGC	1 cut(s)	49
AcoI	YGGCCR	4 cut(s)	166, 748, 820, 1060
AcsI	RAATTY	1 cut(s)	1028
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	561
AfaI	GTAC	2 cut(s)	64, 539
AfeI	AGCGCT	1 cut(s)	1124
AfiI	CCNNNNNNNGG	6 cut(s)	175, 288, 376, 523, 746, 818
AflII	CTTAAG	1 cut(s)	889
AflIII	ACRYGT	1 cut(s)	1002
AgsI	TTSAA	6 cut(s)	114, 125, 184, 530, 799, 992
AjnI	CCWGG	2 cut(s)	147, 1012
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	5 cut(s)	104, 577, 651, 728, 997
AluI	AGCT	5 cut(s)	104, 577, 651, 728, 997
Alw21I	GWGCWC	1 cut(s)	1077
Alw26I	GTCTC	7 cut(s)	331, 404, 410, 416, 441, 589, 924
AlwNI	CAGNNNCTG	1 cut(s)	836
Ama87I	CYCGRG	1 cut(s)	927
Aor51HI	AGCGCT	1 cut(s)	1124
AoxI	GGCC	6 cut(s)	166, 259, 748, 820, 1060, 1094
ApeKI	GCWGC	3 cut(s)	101, 231, 250
ApoI	RAATTY	1 cut(s)	1028
AspLEI	GCGC	2 cut(s)	925, 1125
AspS9I	GGNCC	2 cut(s)	809, 1094
AsuHPI	GGTGA	2 cut(s)	206, 645
AvaI	CYCGRG	1 cut(s)	927
AvaII	GGWCC	1 cut(s)	809
AxyI	CCTNAGG	2 cut(s)	477, 1098
BalI	TGGCCA	3 cut(s)	750, 822, 1062
BanII	GRGCYC	1 cut(s)	454
Bbv12I	GWGCWC	1 cut(s)	1077
BbvI	GCAGC	3 cut(s)	113, 237, 243
BccI	CCATC	4 cut(s)	140, 248, 645, 977
BceAI	ACGGC	2 cut(s)	153, 1051
BcgI	CGANNNNNNTGC	4 cut(s)	188, 222, 887, 921
BciT130I	CCWGG	2 cut(s)	149, 1014
BclI	TGATCA	1 cut(s)	501
BcoDI	GTCTC	7 cut(s)	331, 404, 410, 416, 441, 589, 924
BfoI	RGCGCY	1 cut(s)	1126
BfrI	CTTAAG	1 cut(s)	889
BfuAI	ACCTGC	1 cut(s)	693
BisI	GCNGC	3 cut(s)	102, 232, 251
BlsI	GCNGC	3 cut(s)	103, 233, 252
Bme1390I	CCNGG	2 cut(s)	149, 1014
Bme18I	GGWCC	1 cut(s)	809
BmeT110I	CYCGRG	1 cut(s)	927
BmgT120I	GGNCC	2 cut(s)	809, 1094
BmiI	GGNNCC	2 cut(s)	810, 1095
BmrFI	CCNGG	2 cut(s)	149, 1014
BmsI	GCATC	2 cut(s)	237, 375
BpmI	CTGGAG	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	1003
BsaHI	GRCGYC	1 cut(s)	561
BsaI	GGTCTC	2 cut(s)	441, 589
BsaJI	CCNNGG	4 cut(s)	15, 169, 370, 1012
BsaXI	ACNNNNNCTCC	4 cut(s)	266, 296, 887, 917
Bsc4I	CCNNNNNNNGG	6 cut(s)	175, 288, 376, 523, 746, 818
Bse1I	ACTGG	3 cut(s)	24, 918, 1063
Bse21I	CCTNAGG	2 cut(s)	477, 1098
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	149, 1014
BseDI	CCNNGG	4 cut(s)	15, 169, 370, 1012
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	6 cut(s)	175, 288, 376, 523, 746, 818
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	5 cut(s)	415, 421, 491, 609, 978
BseNI	ACTGG	3 cut(s)	24, 918, 1063
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	3 cut(s)	113, 237, 243
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	6 cut(s)	168, 261, 750, 822, 1062, 1096
BsiHKAI	GWGCWC	1 cut(s)	1077
BsiHKCI	CYCGRG	1 cut(s)	927
BslI	CCNNNNNNNGG	6 cut(s)	175, 288, 376, 523, 746, 818
BsmAI	GTCTC	7 cut(s)	331, 404, 410, 416, 441, 589, 924
BsnI	GGCC	6 cut(s)	168, 261, 750, 822, 1062, 1096
Bso31I	GGTCTC	2 cut(s)	441, 589
BsoBI	CYCGRG	1 cut(s)	927
Bsp1286I	GDGCHC	2 cut(s)	454, 1077
Bsp143I	GATC	3 cut(s)	415, 501, 686
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	6 cut(s)	168, 261, 750, 822, 1062, 1096
BspCNI	CTCAG	5 cut(s)	414, 420, 490, 608, 977
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	2 cut(s)	457, 1024
BspLI	GGNNCC	2 cut(s)	810, 1095
BspMI	ACCTGC	1 cut(s)	693
BspQI	GCTCTTC	2 cut(s)	459, 987
BspTI	CTTAAG	1 cut(s)	889
BspTNI	GGTCTC	2 cut(s)	441, 589
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	24, 918, 1063
BssECI	CCNNGG	4 cut(s)	15, 169, 370, 1012
BssMI	GATC	3 cut(s)	415, 501, 686
BssNI	GRCGYC	1 cut(s)	561
Bst2UI	CCWGG	2 cut(s)	149, 1014
Bst4CI	ACNGT	3 cut(s)	16, 304, 646
Bst6I	CTCTTC	3 cut(s)	459, 973, 987
BstACI	GRCGYC	1 cut(s)	561
BstAFI	CTTAAG	1 cut(s)	889
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstDEI	CTNAG	9 cut(s)	92, 401, 407, 477, 595, 617, 813, 964, 1098
BstDSI	CCRYGG	2 cut(s)	15, 169
BstEII	GGTNACC	1 cut(s)	705
BstF5I	GGATG	1 cut(s)	366
BstFNI	CGCG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	1126
BstHHI	GCGC	2 cut(s)	925, 1125
BstKTI	GATC	3 cut(s)	418, 504, 689
BstMAI	GTCTC	7 cut(s)	331, 404, 410, 416, 441, 589, 924
BstMBI	GATC	3 cut(s)	415, 501, 686
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 668
BstNI	CCWGG	2 cut(s)	149, 1014
BstNSI	RCATGY	1 cut(s)	1006
BstPI	GGTNACC	1 cut(s)	705
BstSCI	CCNGG	2 cut(s)	147, 1012
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	3 cut(s)	113, 237, 243
BstXI	CCANNNNNNTGG	3 cut(s)	139, 447, 620
Bsu36I	CCTNAGG	2 cut(s)	477, 1098
BsuRI	GGCC	6 cut(s)	168, 261, 750, 822, 1062, 1096
BtgI	CCRYGG	2 cut(s)	15, 169
BtsCI	GGATG	1 cut(s)	366
BtsI	GCAGTG	1 cut(s)	1077
BtsIMutI	CAGTG	6 cut(s)	169, 300, 507, 925, 972, 1077
BveI	ACCTGC	1 cut(s)	693
CaiI	CAGNNNCTG	1 cut(s)	836
CciI	TCATGA	2 cut(s)	457, 1024
CfoI	GCGC	2 cut(s)	925, 1125
Cfr13I	GGNCC	2 cut(s)	809, 1094
CseI	GACGC	2 cut(s)	258, 668
Csp6I	GTAC	2 cut(s)	63, 538
CviAII	CATG	9 cut(s)	286, 293, 432, 458, 518, 523, 1003, 1025, 1107
CviQI	GTAC	2 cut(s)	63, 538
DdeI	CTNAG	9 cut(s)	92, 401, 407, 477, 595, 617, 813, 964, 1098
DpnI	GATC	3 cut(s)	417, 503, 688
DpnII	GATC	3 cut(s)	415, 501, 686
EaeI	YGGCCR	4 cut(s)	166, 748, 820, 1060
Eam1104I	CTCTTC	3 cut(s)	459, 973, 987
EarI	CTCTTC	3 cut(s)	459, 973, 987
Eco24I	GRGCYC	1 cut(s)	454
Eco31I	GGTCTC	2 cut(s)	441, 589
Eco47I	GGWCC	1 cut(s)	809
Eco47III	AGCGCT	1 cut(s)	1124
Eco57I	CTGAAG	1 cut(s)	306
Eco81I	CCTNAGG	2 cut(s)	477, 1098
Eco88I	CYCGRG	1 cut(s)	927
Eco91I	GGTNACC	1 cut(s)	705
EcoO109I	RGGNCCY	2 cut(s)	809, 1094
EcoO65I	GGTNACC	1 cut(s)	705
EcoRI	GAATTC	1 cut(s)	1028
EcoRII	CCWGG	2 cut(s)	147, 1012
EcoT38I	GRGCYC	1 cut(s)	454
FaeI	CATG	9 cut(s)	289, 296, 435, 461, 521, 526, 1006, 1028, 1110
FatI	CATG	9 cut(s)	285, 292, 431, 457, 517, 522, 1002, 1024, 1106
FauI	CCCGC	1 cut(s)	56
FbaI	TGATCA	1 cut(s)	501
FblI	GTMKAC	1 cut(s)	955
Fnu4HI	GCNGC	3 cut(s)	102, 232, 251
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	3 cut(s)	102, 232, 251
GlaI	GCGC	2 cut(s)	924, 1124
GluI	GCNGC	3 cut(s)	102, 232, 251
GsuI	CTGGAG	1 cut(s)	723
HaeII	RGCGCY	1 cut(s)	1126
HaeIII	GGCC	6 cut(s)	168, 261, 750, 822, 1062, 1096
HgaI	GACGC	2 cut(s)	258, 668
HhaI	GCGC	2 cut(s)	925, 1125
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	9 cut(s)	289, 296, 435, 461, 521, 526, 1006, 1028, 1110
Hin6I	GCGC	2 cut(s)	923, 1123
HinP1I	GCGC	2 cut(s)	923, 1123
HinfI	GANTC	8 cut(s)	84, 217, 482, 512, 547, 599, 761, 1103
HphI	GGTGA	2 cut(s)	206, 645
Hpy166II	GTNNAC	3 cut(s)	142, 956, 1118
Hpy188I	TCNGA	4 cut(s)	371, 598, 642, 691
Hpy188III	TCNNGA	9 cut(s)	221, 244, 413, 419, 458, 479, 740, 929, 1025
Hpy8I	GTNNAC	3 cut(s)	142, 956, 1118
Hpy99I	CGWCG	1 cut(s)	563
HpyCH4III	ACNGT	3 cut(s)	16, 304, 646
HpyCH4IV	ACGT	2 cut(s)	138, 561
HpyCH4V	TGCA	2 cut(s)	101, 1056
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 668
HpyF3I	CTNAG	9 cut(s)	92, 401, 407, 477, 595, 617, 813, 964, 1098
HpySE526I	ACGT	2 cut(s)	138, 561
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	9 cut(s)	289, 296, 435, 461, 521, 526, 1006, 1028, 1110
HspAI	GCGC	2 cut(s)	923, 1123
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	3 cut(s)	415, 501, 686
LguI	GCTCTTC	2 cut(s)	459, 987
LmnI	GCTCC	3 cut(s)	318, 856, 895
Lsp1109I	GCAGC	3 cut(s)	113, 237, 243
LweI	GCATC	2 cut(s)	237, 375
MaeII	ACGT	2 cut(s)	138, 561
MaeIII	GTNAC	4 cut(s)	194, 544, 606, 705
MalI	GATC	3 cut(s)	417, 503, 688
MboI	GATC	3 cut(s)	415, 501, 686
MhlI	GDGCHC	2 cut(s)	454, 1077
MlsI	TGGCCA	3 cut(s)	750, 822, 1062
MluCI	AATT	6 cut(s)	67, 445, 732, 767, 877, 1028
MluNI	TGGCCA	3 cut(s)	750, 822, 1062
MlyI	GAGTC	3 cut(s)	226, 476, 541
MmeI	TCCRAC	2 cut(s)	637, 955
MnlI	CCTC	7 cut(s)	72, 292, 365, 368, 486, 747, 936
Mox20I	TGGCCA	3 cut(s)	750, 822, 1062
MscI	TGGCCA	3 cut(s)	750, 822, 1062
MseI	TTAA	2 cut(s)	632, 890
MslI	CAYNNNNRTG	2 cut(s)	137, 245
Msp20I	TGGCCA	3 cut(s)	750, 822, 1062
MspA1I	CMGCKG	1 cut(s)	104
MspCI	CTTAAG	1 cut(s)	889
MspR9I	CCNGG	2 cut(s)	149, 1014
MvaI	CCWGG	2 cut(s)	149, 1014
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	2 cut(s)	107, 668
NdeII	GATC	3 cut(s)	415, 501, 686
NlaIII	CATG	9 cut(s)	289, 296, 435, 461, 521, 526, 1006, 1028, 1110
NlaIV	GGNNCC	2 cut(s)	810, 1095
NmuCI	GTSAC	3 cut(s)	194, 544, 606
NspI	RCATGY	1 cut(s)	1006
PaeR7I	CTCGAG	1 cut(s)	927
PagI	TCATGA	2 cut(s)	457, 1024
PciI	ACATGT	1 cut(s)	1002
PciSI	GCTCTTC	2 cut(s)	459, 987
PfeI	GAWTC	5 cut(s)	84, 512, 599, 761, 1103
PflFI	GACNNNGTC	1 cut(s)	560
PflMI	CCANNNNNTGG	2 cut(s)	523, 746
PkrI	GCNGC	3 cut(s)	103, 233, 252
PleI	GAGTC	3 cut(s)	225, 476, 541
PpsI	GAGTC	3 cut(s)	225, 476, 541
PpuMI	RGGWCCY	1 cut(s)	809
PscI	ACATGT	1 cut(s)	1002
PsiI	TTATAA	1 cut(s)	882
Psp5II	RGGWCCY	1 cut(s)	809
Psp6I	CCWGG	2 cut(s)	147, 1012
PspEI	GGTNACC	1 cut(s)	705
PspGI	CCWGG	2 cut(s)	147, 1012
PspN4I	GGNNCC	2 cut(s)	810, 1095
PspPI	GGNCC	2 cut(s)	809, 1094
PspPPI	RGGWCCY	1 cut(s)	809
PstNI	CAGNNNCTG	1 cut(s)	836
PsyI	GACNNNGTC	1 cut(s)	560
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	64, 539
RsaNI	GTAC	2 cut(s)	63, 538
RseI	CAYNNNNRTG	2 cut(s)	137, 245
SapI	GCTCTTC	2 cut(s)	459, 987
SaqAI	TTAA	2 cut(s)	632, 890
SatI	GCNGC	3 cut(s)	102, 232, 251
Sau3AI	GATC	3 cut(s)	415, 501, 686
Sau96I	GGNCC	2 cut(s)	809, 1094
SchI	GAGTC	3 cut(s)	226, 476, 541
ScrFI	CCNGG	2 cut(s)	149, 1014
SduI	GDGCHC	2 cut(s)	454, 1077
SfaNI	GCATC	2 cut(s)	237, 375
Sfr274I	CTCGAG	1 cut(s)	927
SinI	GGWCC	1 cut(s)	809
SlaI	CTCGAG	1 cut(s)	927
SmiMI	CAYNNNNRTG	2 cut(s)	137, 245
SmlI	CTYRAG	3 cut(s)	889, 927, 1018
SmoI	CTYRAG	3 cut(s)	889, 927, 1018
Sse9I	AATT	6 cut(s)	67, 445, 732, 767, 877, 1028
SsiI	CCGC	1 cut(s)	49
StyD4I	CCNGG	2 cut(s)	147, 1012
TaaI	ACNGT	3 cut(s)	16, 304, 646
TaiI	ACGT	2 cut(s)	141, 564
TaqI	TCGA	3 cut(s)	414, 907, 928
TasI	AATT	6 cut(s)	67, 445, 732, 767, 877, 1028
TatI	WGTACW	2 cut(s)	62, 537
TfiI	GAWTC	5 cut(s)	84, 512, 599, 761, 1103
Tru1I	TTAA	2 cut(s)	632, 890
Tru9I	TTAA	2 cut(s)	632, 890
TscAI	CASTG	6 cut(s)	169, 307, 514, 925, 972, 1077
TseFI	GTSAC	3 cut(s)	194, 544, 606
TseI	GCWGC	3 cut(s)	101, 231, 250
Tsp45I	GTSAC	3 cut(s)	194, 544, 606
TspDTI	ATGAA	4 cut(s)	366, 420, 446, 1041
TspRI	CASTG	6 cut(s)	169, 307, 514, 925, 972, 1077
Tth111I	GACNNNGTC	1 cut(s)	560
Van91I	CCANNNNNTGG	2 cut(s)	523, 746
Vha464I	CTTAAG	1 cut(s)	889
VpaK11BI	GGWCC	1 cut(s)	809
XapI	RAATTY	1 cut(s)	1028
XceI	RCATGY	1 cut(s)	1006
XhoI	CTCGAG	1 cut(s)	927
XmiI	GTMKAC	1 cut(s)	955
ZraI	GACGTC	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.