Rw3G029440

photosynthetic electron transport in photosystem I

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
45339316 .. 45340673
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G029440.1

Sequence Viewer

Length: 1137 bp
ATGGCAATGACCACCGTGGCTTCCAGTCCATTTTTGTTATCCAAATCCCGCCCTTGCTCTTGTACTAATTACAACAAGAGGGGATTCCCACTTAGAGTCGCAGCTGTTGCTTCAATCCCATTTCAACAACCCATCAACGTGGACTACCTGGAACAAGAGTTCAGTGGCCGTGGAGTGGTATTCAAAGGCATTGGTGACGATTGCGTTGCCAAGATGAGTCTTGATAATGGCAGCAAAGCCATCTTGATGCTGCCAAGTGGCCTAATCGCGTCCTACAAAGCCTCCATGTGGCATGGTGGCACTGTTGAGTTGCTCCAATCTTCAGTCTCCCAAGAAGAAGAAGAAGAAGCCAATAGCATCCGAGGAGGGGTGTCTGTGGCTTTGGAATGTCTCAGTCTCAGTCTCGATCAAGAACAAGTTTCATGGTCTCCAAGTAATTGGGCTCTTCATGACATCACAGGAAATCCTCAGGACTCTATTCAGGTAGAACTGATCAGCACTGATTCCCATGACATGGTTCAAGTCAAGTACATTGTGACTCTCCAAGACGACGTCCTAATCTCACAGCTTATGGTCTCTAATAACTCAGATTCTTCGTCACTCCAACTAAGTGGGTGTATTTTAAGCCATCTGACAGTAAGCTCACCAGACGCTACTTACGCAGTTGGTTTGGAAAGATCAGATTTCTTTGGCAGGTTACCCATTTTGACAGGTTCAGCTATAATTCCTCCAGATTGTGGCCAGAAAAGTGAATCTCAATTCAGCCAACTATGGAAACAAATGACATTCAATGCTTGGGGTCCTAAGAATGGCCACCAAACAGAAACTGAACAAGAAGAAGAAATGGAGCAAGGGGAAGAAGATGACAATTATAAGAACTTAAGGGAGCAAATGTGTCGAATATACACCAGTGCGCCTCGAGACTTCACAATCATTGACAGGGGTAGAAGAAACTCAGTGGTGGTTGGAAGAGATGGGTTTGAAGAGCTATACATGTTCAGCCCTGGCTCAAGTCATGAATTCTACGGCGAATATGCTTATATCTGCATTGGCCAGTCGGCAGTGCTCAATCCAATAATCTTGGGGCCTAAGGAATCATGGACAGGTGGACAGCGCTTACACAATCCAAATCTCTAA

Protein Analysis

378

Amino Acids

41.69

Weight (kDa)

4.7

Isoelectric Point (pI)

58.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 873
AatII GACGTC 1 cut(s) 555
Acc36I ACCTGC 1 cut(s) 684
AccB7I CCANNNNNTGG 2 cut(s) 514, 737
AccII CGCG 1 cut(s) 269
AciI CCGC 1 cut(s) 49
AcoI YGGCCR 4 cut(s) 166, 739, 811, 1051
AcsI RAATTY 1 cut(s) 1019
AcuI CTGAAG 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 552
AfaI GTAC 2 cut(s) 64, 530
AfeI AGCGCT 1 cut(s) 1115
AfiI CCNNNNNNNGG 6 cut(s) 175, 288, 367, 514, 737, 809
AflII CTTAAG 1 cut(s) 880
AflIII ACRYGT 1 cut(s) 993
AgsI TTSAA 6 cut(s) 114, 125, 184, 521, 790, 983
AjnI CCWGG 2 cut(s) 147, 1003
AloI GAACNNNNNNTCC 2 cut(s) 143, 175
AluBI AGCT 5 cut(s) 104, 568, 642, 719, 988
AluI AGCT 5 cut(s) 104, 568, 642, 719, 988
Alw21I GWGCWC 1 cut(s) 1068
Alw26I GTCTC 7 cut(s) 331, 395, 401, 407, 432, 580, 915
AlwNI CAGNNNCTG 1 cut(s) 827
Ama87I CYCGRG 1 cut(s) 918
Aor51HI AGCGCT 1 cut(s) 1115
AoxI GGCC 6 cut(s) 166, 259, 739, 811, 1051, 1085
ApeKI GCWGC 3 cut(s) 101, 231, 250
ApoI RAATTY 1 cut(s) 1019
AspLEI GCGC 2 cut(s) 916, 1116
AspS9I GGNCC 2 cut(s) 800, 1085
AsuHPI GGTGA 2 cut(s) 206, 636
AvaI CYCGRG 1 cut(s) 918
AvaII GGWCC 1 cut(s) 800
AxyI CCTNAGG 2 cut(s) 468, 1089
BalI TGGCCA 3 cut(s) 741, 813, 1053
BanII GRGCYC 1 cut(s) 445
Bbv12I GWGCWC 1 cut(s) 1068
BbvI GCAGC 3 cut(s) 113, 237, 243
BccI CCATC 4 cut(s) 140, 248, 636, 968
BceAI ACGGC 2 cut(s) 153, 1042
BcgI CGANNNNNNTGC 4 cut(s) 188, 222, 878, 912
BciT130I CCWGG 2 cut(s) 149, 1005
BclI TGATCA 1 cut(s) 492
BcoDI GTCTC 7 cut(s) 331, 395, 401, 407, 432, 580, 915
BfoI RGCGCY 1 cut(s) 1117
BfrI CTTAAG 1 cut(s) 880
BfuAI ACCTGC 1 cut(s) 684
BisI GCNGC 3 cut(s) 102, 232, 251
BlsI GCNGC 3 cut(s) 103, 233, 252
Bme1390I CCNGG 2 cut(s) 149, 1005
Bme18I GGWCC 1 cut(s) 800
BmeT110I CYCGRG 1 cut(s) 918
BmgT120I GGNCC 2 cut(s) 800, 1085
BmiI GGNNCC 2 cut(s) 801, 1086
BmrFI CCNGG 2 cut(s) 149, 1005
BmsI GCATC 2 cut(s) 237, 366
BpmI CTGGAG 1 cut(s) 714
BpuEI CTTGAG 1 cut(s) 994
BsaHI GRCGYC 1 cut(s) 552
BsaI GGTCTC 2 cut(s) 432, 580
BsaJI CCNNGG 4 cut(s) 15, 169, 361, 1003
BsaXI ACNNNNNCTCC 4 cut(s) 266, 296, 878, 908
Bsc4I CCNNNNNNNGG 6 cut(s) 175, 288, 367, 514, 737, 809
Bse1I ACTGG 3 cut(s) 24, 909, 1054
Bse21I CCTNAGG 2 cut(s) 468, 1089
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 2 cut(s) 149, 1005
BseDI CCNNGG 4 cut(s) 15, 169, 361, 1003
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 6 cut(s) 175, 288, 367, 514, 737, 809
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 5 cut(s) 406, 412, 482, 600, 969
BseNI ACTGG 3 cut(s) 24, 909, 1054
BseRI GAGGAG 1 cut(s) 378
BseXI GCAGC 3 cut(s) 113, 237, 243
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 6 cut(s) 168, 261, 741, 813, 1053, 1087
BsiHKAI GWGCWC 1 cut(s) 1068
BsiHKCI CYCGRG 1 cut(s) 918
BslI CCNNNNNNNGG 6 cut(s) 175, 288, 367, 514, 737, 809
BsmAI GTCTC 7 cut(s) 331, 395, 401, 407, 432, 580, 915
BsnI GGCC 6 cut(s) 168, 261, 741, 813, 1053, 1087
Bso31I GGTCTC 2 cut(s) 432, 580
BsoBI CYCGRG 1 cut(s) 918
Bsp1286I GDGCHC 2 cut(s) 445, 1068
Bsp143I GATC 3 cut(s) 406, 492, 677
BspACI CCGC 1 cut(s) 49
BspANI GGCC 6 cut(s) 168, 261, 741, 813, 1053, 1087
BspCNI CTCAG 5 cut(s) 405, 411, 481, 599, 968
BspFNI CGCG 1 cut(s) 269
BspHI TCATGA 2 cut(s) 448, 1015
BspLI GGNNCC 2 cut(s) 801, 1086
BspMI ACCTGC 1 cut(s) 684
BspQI GCTCTTC 2 cut(s) 450, 978
BspTI CTTAAG 1 cut(s) 880
BspTNI GGTCTC 2 cut(s) 432, 580
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 3 cut(s) 24, 909, 1054
BssECI CCNNGG 4 cut(s) 15, 169, 361, 1003
BssMI GATC 3 cut(s) 406, 492, 677
BssNI GRCGYC 1 cut(s) 552
Bst2UI CCWGG 2 cut(s) 149, 1005
Bst4CI ACNGT 3 cut(s) 16, 304, 637
Bst6I CTCTTC 3 cut(s) 450, 964, 978
BstACI GRCGYC 1 cut(s) 552
BstAFI CTTAAG 1 cut(s) 880
BstAPI GCANNNNNTGC 1 cut(s) 107
BstDEI CTNAG 9 cut(s) 92, 392, 398, 468, 586, 608, 804, 955, 1089
BstDSI CCRYGG 2 cut(s) 15, 169
BstEII GGTNACC 1 cut(s) 696
BstF5I GGATG 1 cut(s) 357
BstFNI CGCG 1 cut(s) 269
BstH2I RGCGCY 1 cut(s) 1117
BstHHI GCGC 2 cut(s) 916, 1116
BstKTI GATC 3 cut(s) 409, 495, 680
BstMAI GTCTC 7 cut(s) 331, 395, 401, 407, 432, 580, 915
BstMBI GATC 3 cut(s) 406, 492, 677
BstMWI GCNNNNNNNGC 2 cut(s) 107, 659
BstNI CCWGG 2 cut(s) 149, 1005
BstNSI RCATGY 1 cut(s) 997
BstPI GGTNACC 1 cut(s) 696
BstSCI CCNGG 2 cut(s) 147, 1003
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 113, 237, 243
BstXI CCANNNNNNTGG 3 cut(s) 139, 438, 611
Bsu36I CCTNAGG 2 cut(s) 468, 1089
BsuRI GGCC 6 cut(s) 168, 261, 741, 813, 1053, 1087
BtgI CCRYGG 2 cut(s) 15, 169
BtsCI GGATG 1 cut(s) 357
BtsI GCAGTG 1 cut(s) 1068
BtsIMutI CAGTG 6 cut(s) 169, 300, 498, 916, 963, 1068
BveI ACCTGC 1 cut(s) 684
CaiI CAGNNNCTG 1 cut(s) 827
CciI TCATGA 2 cut(s) 448, 1015
CfoI GCGC 2 cut(s) 916, 1116
Cfr13I GGNCC 2 cut(s) 800, 1085
CseI GACGC 2 cut(s) 258, 659
Csp6I GTAC 2 cut(s) 63, 529
CviAII CATG 9 cut(s) 286, 293, 423, 449, 509, 514, 994, 1016, 1098
CviQI GTAC 2 cut(s) 63, 529
DdeI CTNAG 9 cut(s) 92, 392, 398, 468, 586, 608, 804, 955, 1089
DpnI GATC 3 cut(s) 408, 494, 679
DpnII GATC 3 cut(s) 406, 492, 677
EaeI YGGCCR 4 cut(s) 166, 739, 811, 1051
Eam1104I CTCTTC 3 cut(s) 450, 964, 978
EarI CTCTTC 3 cut(s) 450, 964, 978
Eco24I GRGCYC 1 cut(s) 445
Eco31I GGTCTC 2 cut(s) 432, 580
Eco47I GGWCC 1 cut(s) 800
Eco47III AGCGCT 1 cut(s) 1115
Eco57I CTGAAG 1 cut(s) 306
Eco81I CCTNAGG 2 cut(s) 468, 1089
Eco88I CYCGRG 1 cut(s) 918
Eco91I GGTNACC 1 cut(s) 696
EcoO109I RGGNCCY 2 cut(s) 800, 1085
EcoO65I GGTNACC 1 cut(s) 696
EcoRI GAATTC 1 cut(s) 1019
EcoRII CCWGG 2 cut(s) 147, 1003
EcoT38I GRGCYC 1 cut(s) 445
FaeI CATG 9 cut(s) 289, 296, 426, 452, 512, 517, 997, 1019, 1101
FatI CATG 9 cut(s) 285, 292, 422, 448, 508, 513, 993, 1015, 1097
FauI CCCGC 1 cut(s) 56
FbaI TGATCA 1 cut(s) 492
Fnu4HI GCNGC 3 cut(s) 102, 232, 251
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 445
Fsp4HI GCNGC 3 cut(s) 102, 232, 251
GlaI GCGC 2 cut(s) 915, 1115
GluI GCNGC 3 cut(s) 102, 232, 251
GsuI CTGGAG 1 cut(s) 714
HaeII RGCGCY 1 cut(s) 1117
HaeIII GGCC 6 cut(s) 168, 261, 741, 813, 1053, 1087
HgaI GACGC 2 cut(s) 258, 659
HhaI GCGC 2 cut(s) 916, 1116
Hin1I GRCGYC 1 cut(s) 552
Hin1II CATG 9 cut(s) 289, 296, 426, 452, 512, 517, 997, 1019, 1101
Hin6I GCGC 2 cut(s) 914, 1114
HinP1I GCGC 2 cut(s) 914, 1114
HinfI GANTC 9 cut(s) 84, 96, 217, 473, 503, 538, 590, 752, 1094
HphI GGTGA 2 cut(s) 206, 636
Hpy166II GTNNAC 2 cut(s) 142, 1109
Hpy188I TCNGA 4 cut(s) 362, 589, 633, 682
Hpy188III TCNNGA 9 cut(s) 221, 244, 404, 410, 449, 470, 731, 920, 1016
Hpy8I GTNNAC 2 cut(s) 142, 1109
Hpy99I CGWCG 1 cut(s) 554
HpyCH4III ACNGT 3 cut(s) 16, 304, 637
HpyCH4IV ACGT 2 cut(s) 138, 552
HpyCH4V TGCA 1 cut(s) 1047
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 659
HpyF3I CTNAG 9 cut(s) 92, 392, 398, 468, 586, 608, 804, 955, 1089
HpySE526I ACGT 2 cut(s) 138, 552
Hsp92I GRCGYC 1 cut(s) 552
Hsp92II CATG 9 cut(s) 289, 296, 426, 452, 512, 517, 997, 1019, 1101
HspAI GCGC 2 cut(s) 914, 1114
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 3 cut(s) 406, 492, 677
LguI GCTCTTC 2 cut(s) 450, 978
LmnI GCTCC 3 cut(s) 318, 847, 886
Lsp1109I GCAGC 3 cut(s) 113, 237, 243
LweI GCATC 2 cut(s) 237, 366
MaeII ACGT 2 cut(s) 138, 552
MaeIII GTNAC 4 cut(s) 194, 535, 597, 696
MalI GATC 3 cut(s) 408, 494, 679
MboI GATC 3 cut(s) 406, 492, 677
MhlI GDGCHC 2 cut(s) 445, 1068
MlsI TGGCCA 3 cut(s) 741, 813, 1053
MluCI AATT 6 cut(s) 67, 436, 723, 758, 868, 1019
MluNI TGGCCA 3 cut(s) 741, 813, 1053
MlyI GAGTC 4 cut(s) 105, 226, 467, 532
MmeI TCCRAC 2 cut(s) 628, 946
MnlI CCTC 7 cut(s) 72, 292, 356, 359, 477, 738, 927
Mox20I TGGCCA 3 cut(s) 741, 813, 1053
MscI TGGCCA 3 cut(s) 741, 813, 1053
MseI TTAA 2 cut(s) 623, 881
MslI CAYNNNNRTG 2 cut(s) 137, 245
Msp20I TGGCCA 3 cut(s) 741, 813, 1053
MspA1I CMGCKG 1 cut(s) 104
MspCI CTTAAG 1 cut(s) 880
MspR9I CCNGG 2 cut(s) 149, 1005
MvaI CCWGG 2 cut(s) 149, 1005
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 107, 659
NdeII GATC 3 cut(s) 406, 492, 677
NlaIII CATG 9 cut(s) 289, 296, 426, 452, 512, 517, 997, 1019, 1101
NlaIV GGNNCC 2 cut(s) 801, 1086
NmuCI GTSAC 3 cut(s) 194, 535, 597
NspI RCATGY 1 cut(s) 997
PaeR7I CTCGAG 1 cut(s) 918
PagI TCATGA 2 cut(s) 448, 1015
PciI ACATGT 1 cut(s) 993
PciSI GCTCTTC 2 cut(s) 450, 978
PfeI GAWTC 5 cut(s) 84, 503, 590, 752, 1094
PflFI GACNNNGTC 1 cut(s) 551
PflMI CCANNNNNTGG 2 cut(s) 514, 737
PkrI GCNGC 3 cut(s) 103, 233, 252
PleI GAGTC 4 cut(s) 104, 225, 467, 532
PpsI GAGTC 4 cut(s) 104, 225, 467, 532
PpuMI RGGWCCY 1 cut(s) 800
PscI ACATGT 1 cut(s) 993
PsiI TTATAA 1 cut(s) 873
Psp5II RGGWCCY 1 cut(s) 800
Psp6I CCWGG 2 cut(s) 147, 1003
PspEI GGTNACC 1 cut(s) 696
PspGI CCWGG 2 cut(s) 147, 1003
PspN4I GGNNCC 2 cut(s) 801, 1086
PspPI GGNCC 2 cut(s) 800, 1085
PspPPI RGGWCCY 1 cut(s) 800
PstNI CAGNNNCTG 1 cut(s) 827
PsyI GACNNNGTC 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 2 cut(s) 64, 530
RsaNI GTAC 2 cut(s) 63, 529
RseI CAYNNNNRTG 2 cut(s) 137, 245
SapI GCTCTTC 2 cut(s) 450, 978
SaqAI TTAA 2 cut(s) 623, 881
SatI GCNGC 3 cut(s) 102, 232, 251
Sau3AI GATC 3 cut(s) 406, 492, 677
Sau96I GGNCC 2 cut(s) 800, 1085
SchI GAGTC 4 cut(s) 105, 226, 467, 532
ScrFI CCNGG 2 cut(s) 149, 1005
SduI GDGCHC 2 cut(s) 445, 1068
SfaNI GCATC 2 cut(s) 237, 366
Sfr274I CTCGAG 1 cut(s) 918
SinI GGWCC 1 cut(s) 800
SlaI CTCGAG 1 cut(s) 918
SmiMI CAYNNNNRTG 2 cut(s) 137, 245
SmlI CTYRAG 3 cut(s) 880, 918, 1009
SmoI CTYRAG 3 cut(s) 880, 918, 1009
Sse9I AATT 6 cut(s) 67, 436, 723, 758, 868, 1019
SsiI CCGC 1 cut(s) 49
StyD4I CCNGG 2 cut(s) 147, 1003
TaaI ACNGT 3 cut(s) 16, 304, 637
TaiI ACGT 2 cut(s) 141, 555
TaqI TCGA 3 cut(s) 405, 898, 919
TasI AATT 6 cut(s) 67, 436, 723, 758, 868, 1019
TatI WGTACW 2 cut(s) 62, 528
TfiI GAWTC 5 cut(s) 84, 503, 590, 752, 1094
Tru1I TTAA 2 cut(s) 623, 881
Tru9I TTAA 2 cut(s) 623, 881
TscAI CASTG 6 cut(s) 169, 307, 505, 916, 963, 1068
TseFI GTSAC 3 cut(s) 194, 535, 597
TseI GCWGC 3 cut(s) 101, 231, 250
Tsp45I GTSAC 3 cut(s) 194, 535, 597
TspDTI ATGAA 3 cut(s) 411, 437, 1032
TspRI CASTG 6 cut(s) 169, 307, 505, 916, 963, 1068
Tth111I GACNNNGTC 1 cut(s) 551
Van91I CCANNNNNTGG 2 cut(s) 514, 737
Vha464I CTTAAG 1 cut(s) 880
VpaK11BI GGWCC 1 cut(s) 800
XapI RAATTY 1 cut(s) 1019
XceI RCATGY 1 cut(s) 997
XhoI CTCGAG 1 cut(s) 918
ZraI GACGTC 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.