Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007163

Physical Location & Seq

Genomic Coordinates Reverse (-)

19916937 .. 19919400

Gene Structure 2464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCAATGGCCACCATGGCTTCCAGTCCATTCTTGTTCTCCAAATTCAGGTCTTGCTCTTGTACTGGTTACAACAAGAGGGTACTCCCACTTAGAGTTGCAGCTGTGGCTTCAATCCCATTTCAGCAACCCATCAACGTGGACTACCTGGAGCAAGAGTTCGGTGGCCATGGAGTCATATTCCAAGGCATTGGTGGCGATTGCGTTGCCAAGATGAGCCTTGACAATGGCAGCAAAGCCATCTTGATGCTTCCTAGTGGCCTAATCGCGTCTTACAAAGCCACCATGTGGCATGGTGGCACTGTTGAGTTGCTCCAGTCTTCAGTCTCCCAAGAAGCCAACACCATCCAAGGAGGGGTGTCTGTGGCTTTGGAATGTCTCGGTGAAGAACAAGTTTCATGGTCTCCAAGTAATTGGGCTCTTCATGACATCACAGGAAGTCCTCAGGACTCTATTCGGGTAGAACTGATGAGCACTGATTCCCATGACATGGTTCAAGTCAAGTACATTGTGACGCTCCAAGACAACGTCCTAATCTCACAGCTTATGGTCTCTAATAACTCTGATTCTTCTTCACTCCAACTAAGTGGTTATATATTGAGCCATCTAACAGTGAGCTCACCAGATGCTACTTTCGCAGTTGGTTTGGAAAGATCAGATTTCTTTGGCAGGTTACCCATTTTGACAAGTTCAGCTATAATTCCTCCAGATTATGGCCAGAAAAGTCCATCTCAATTCAGCCAACTATGGAAACAGATGGCTTCCAATGATTGGGGTCCTAAGAATGGCCACCAAACAAAAACTGAACAAGAAGAAGAAATGGAGGAAGGGGAAGAAGATGACAATTACAAGAACTTAAGGGAGCAAATGTGTCGAATATACACCAGTGCTCCTCGAGACTTCACAATCATTGACAGGGGTAGACGAAACTCAGTTGTGGTTGGAAGAGATGGGTTTGAAGAGCTATACATCTTCAGCCCTGGCTCAAGTCATGAATACTACAGCGAATATGCTTTTGTCTGCGTTGGCCAGTCGGCTGTGCTCAATCCAATAATCTTGGGGCCTAAGGAATCATGGACAGGCGGACAGCGCTTACACAATCCAAATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015979 GO:0016020 GO:0019222 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0055114 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

371

Amino Acids

40.72

Weight (kDa)

4.94

Isoelectric Point (pI)

61.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55370 AT1G55370
fragaria_vesca	FvH4_1g28070 FvH4_1g28070 FvH4_4g18560 FvH4_4g18560
malus_domestica	MD14G1002400.v1.1
prunus_persica	Prupe.7G003600_v2.0.a1
pyrus_communis	pycom49g00190
rosa_chinensis	RchiOBHm_Chr3g0497181
rosa_laevigata	RLG00000000831 RLG00000022473
rosa_multiflora	Rmu_sc0002276.1_g000005 Rmu_sc0002893.1_g000013 Rmu_sc0007568.1_g000002 Rmu_ssc0000474.1_g000020
rosa_roxburghii	Rroxscaffold_6G00388300
rosa_rugosa	Rorug03G0291600
rosa_samantha	Rh3AG334900 Rh3BG372600 Rh3CG369000 Rh3DG369900 Rh7CG503300 Rh7DG471700
rosa_wichuraiana	Rw3G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	660
AccB7I	CCANNNNNTGG	4 cut(s)	288, 490, 713, 771
AccI	GTMKAC	1 cut(s)	922
AccII	CGCG	1 cut(s)	269
AciI	CCGC	1 cut(s)	1083
AcoI	YGGCCR	5 cut(s)	9, 166, 715, 787, 1027
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	2 cut(s)	306, 958
AdeI	CACNNNGTG	1 cut(s)	288
AfaI	GTAC	3 cut(s)	64, 84, 506
AfeI	AGCGCT	1 cut(s)	1091
AfiI	CCNNNNNNNGG	7 cut(s)	48, 288, 355, 490, 713, 771, 785
AflII	CTTAAG	1 cut(s)	856
AgsI	TTSAA	3 cut(s)	114, 497, 959
AjnI	CCWGG	2 cut(s)	147, 979
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	5 cut(s)	104, 544, 618, 695, 964
AluI	AGCT	5 cut(s)	104, 544, 618, 695, 964
Alw21I	GWGCWC	4 cut(s)	476, 620, 892, 1044
Alw26I	GTCTC	5 cut(s)	331, 383, 408, 556, 891
Ama87I	CYCGRG	1 cut(s)	894
Aor51HI	AGCGCT	1 cut(s)	1091
AoxI	GGCC	7 cut(s)	9, 166, 259, 715, 787, 1027, 1061
ApeKI	GCWGC	2 cut(s)	101, 231
ApoI	RAATTY	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	1092
AspS9I	GGNCC	2 cut(s)	776, 1061
AsuHPI	GGTGA	2 cut(s)	395, 612
AvaI	CYCGRG	1 cut(s)	894
AvaII	GGWCC	1 cut(s)	776
AxyI	CCTNAGG	2 cut(s)	444, 1065
BalI	TGGCCA	5 cut(s)	11, 168, 717, 789, 1029
BanII	GRGCYC	2 cut(s)	421, 620
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	4 cut(s)	476, 620, 892, 1044
BbvI	GCAGC	2 cut(s)	113, 243
BccI	CCATC	7 cut(s)	140, 248, 353, 612, 736, 751, 944
BcgI	CGANNNNNNTGC	4 cut(s)	188, 222, 854, 888
BciT130I	CCWGG	2 cut(s)	149, 981
BcoDI	GTCTC	5 cut(s)	331, 383, 408, 556, 891
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	1000
BfoI	RGCGCY	1 cut(s)	1093
BfrI	CTTAAG	1 cut(s)	856
BfuAI	ACCTGC	1 cut(s)	660
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	102, 232
BlsI	GCNGC	2 cut(s)	103, 233
Bme1390I	CCNGG	2 cut(s)	149, 981
Bme18I	GGWCC	1 cut(s)	776
BmeT110I	CYCGRG	1 cut(s)	894
BmgT120I	GGNCC	2 cut(s)	776, 1061
BmiI	GGNNCC	2 cut(s)	777, 1062
BmrFI	CCNGG	2 cut(s)	149, 981
BmsI	GCATC	2 cut(s)	237, 616
BpiI	GAAGAC	1 cut(s)	312
BpmI	CTGGAG	3 cut(s)	170, 299, 690
BpuEI	CTTGAG	1 cut(s)	970
BsaI	GGTCTC	2 cut(s)	408, 556
BsaJI	CCNNGG	5 cut(s)	15, 169, 184, 349, 979
BsaXI	ACNNNNNCTCC	6 cut(s)	143, 173, 854, 874, 884, 904
Bsc4I	CCNNNNNNNGG	7 cut(s)	48, 288, 355, 490, 713, 771, 785
Bse1I	ACTGG	5 cut(s)	24, 70, 316, 885, 1030
Bse21I	CCTNAGG	2 cut(s)	444, 1065
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	149, 981
BseDI	CCNNGG	5 cut(s)	15, 169, 184, 349, 979
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	7 cut(s)	48, 288, 355, 490, 713, 771, 785
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	458, 945
BseNI	ACTGG	5 cut(s)	24, 70, 316, 885, 1030
BseRI	GAGGAG	1 cut(s)	882
BseXI	GCAGC	2 cut(s)	113, 243
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	7 cut(s)	11, 168, 261, 717, 789, 1029, 1063
BsiHKAI	GWGCWC	4 cut(s)	476, 620, 892, 1044
BsiHKCI	CYCGRG	1 cut(s)	894
BslI	CCNNNNNNNGG	7 cut(s)	48, 288, 355, 490, 713, 771, 785
BsmAI	GTCTC	5 cut(s)	331, 383, 408, 556, 891
BsnI	GGCC	7 cut(s)	11, 168, 261, 717, 789, 1029, 1063
Bso31I	GGTCTC	2 cut(s)	408, 556
BsoBI	CYCGRG	1 cut(s)	894
Bsp1286I	GDGCHC	5 cut(s)	421, 476, 620, 892, 1044
Bsp143I	GATC	1 cut(s)	653
Bsp19I	CCATGG	2 cut(s)	15, 169
BspACI	CCGC	1 cut(s)	1083
BspANI	GGCC	7 cut(s)	11, 168, 261, 717, 789, 1029, 1063
BspCNI	CTCAG	2 cut(s)	457, 944
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	2 cut(s)	424, 991
BspLI	GGNNCC	2 cut(s)	777, 1062
BspMI	ACCTGC	1 cut(s)	660
BspQI	GCTCTTC	2 cut(s)	426, 954
BspTI	CTTAAG	1 cut(s)	856
BspTNI	GGTCTC	2 cut(s)	408, 556
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	5 cut(s)	24, 70, 316, 885, 1030
BssECI	CCNNGG	5 cut(s)	15, 169, 184, 349, 979
BssMI	GATC	1 cut(s)	653
BssT1I	CCWWGG	4 cut(s)	15, 169, 184, 349
Bst2UI	CCWGG	2 cut(s)	149, 981
Bst4CI	ACNGT	2 cut(s)	304, 613
Bst6I	CTCTTC	3 cut(s)	426, 940, 954
BstAFI	CTTAAG	1 cut(s)	856
BstDEI	CTNAG	6 cut(s)	92, 444, 584, 780, 931, 1065
BstDSI	CCRYGG	2 cut(s)	15, 169
BstEII	GGTNACC	1 cut(s)	672
BstF5I	GGATG	1 cut(s)	345
BstFNI	CGCG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	1093
BstHHI	GCGC	1 cut(s)	1092
BstKTI	GATC	1 cut(s)	656
BstMAI	GTCTC	5 cut(s)	331, 383, 408, 556, 891
BstMBI	GATC	1 cut(s)	653
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 107, 195, 635, 1089
BstNI	CCWGG	2 cut(s)	149, 981
BstPI	GGTNACC	1 cut(s)	672
BstSCI	CCNGG	2 cut(s)	147, 979
BstSFI	CTRYAG	1 cut(s)	1000
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	113, 243
BstV2I	GAAGAC	1 cut(s)	312
BstXI	CCANNNNNNTGG	4 cut(s)	139, 191, 414, 587
Bsu36I	CCTNAGG	2 cut(s)	444, 1065
BsuRI	GGCC	7 cut(s)	11, 168, 261, 717, 789, 1029, 1063
BtgI	CCRYGG	2 cut(s)	15, 169
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	4 cut(s)	300, 474, 618, 892
BveI	ACCTGC	1 cut(s)	660
CciI	TCATGA	2 cut(s)	424, 991
CfoI	GCGC	1 cut(s)	1092
Cfr13I	GGNCC	2 cut(s)	776, 1061
CseI	GACGC	2 cut(s)	258, 523
Csp6I	GTAC	3 cut(s)	63, 83, 505
CviQI	GTAC	3 cut(s)	63, 83, 505
DdeI	CTNAG	6 cut(s)	92, 444, 584, 780, 931, 1065
DpnI	GATC	1 cut(s)	655
DpnII	GATC	1 cut(s)	653
DraIII	CACNNNGTG	1 cut(s)	288
EaeI	YGGCCR	5 cut(s)	9, 166, 715, 787, 1027
Eam1104I	CTCTTC	3 cut(s)	426, 940, 954
EarI	CTCTTC	3 cut(s)	426, 940, 954
EciI	GGCGGA	1 cut(s)	1098
Ecl136II	GAGCTC	1 cut(s)	618
Eco130I	CCWWGG	4 cut(s)	15, 169, 184, 349
Eco24I	GRGCYC	2 cut(s)	421, 620
Eco31I	GGTCTC	2 cut(s)	408, 556
Eco47I	GGWCC	1 cut(s)	776
Eco47III	AGCGCT	1 cut(s)	1091
Eco53kI	GAGCTC	1 cut(s)	618
Eco57I	CTGAAG	2 cut(s)	306, 958
Eco81I	CCTNAGG	2 cut(s)	444, 1065
Eco88I	CYCGRG	1 cut(s)	894
Eco91I	GGTNACC	1 cut(s)	672
EcoICRI	GAGCTC	1 cut(s)	618
EcoO109I	RGGNCCY	2 cut(s)	776, 1061
EcoO65I	GGTNACC	1 cut(s)	672
EcoRII	CCWGG	2 cut(s)	147, 979
EcoT14I	CCWWGG	4 cut(s)	15, 169, 184, 349
EcoT38I	GRGCYC	2 cut(s)	421, 620
ErhI	CCWWGG	4 cut(s)	15, 169, 184, 349
FblI	GTMKAC	1 cut(s)	922
Fnu4HI	GCNGC	2 cut(s)	102, 232
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	2 cut(s)	421, 620
Fsp4HI	GCNGC	2 cut(s)	102, 232
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	1091
GluI	GCNGC	2 cut(s)	102, 232
GsuI	CTGGAG	3 cut(s)	170, 299, 690
HaeII	RGCGCY	1 cut(s)	1093
HaeIII	GGCC	7 cut(s)	11, 168, 261, 717, 789, 1029, 1063
HgaI	GACGC	2 cut(s)	258, 523
HhaI	GCGC	1 cut(s)	1092
Hin6I	GCGC	1 cut(s)	1090
HinP1I	GCGC	1 cut(s)	1090
HinfI	GANTC	5 cut(s)	174, 449, 479, 566, 1070
HphI	GGTGA	2 cut(s)	395, 612
Hpy166II	GTNNAC	2 cut(s)	142, 923
Hpy188I	TCNGA	2 cut(s)	565, 658
Hpy188III	TCNNGA	6 cut(s)	244, 425, 446, 707, 896, 992
Hpy8I	GTNNAC	2 cut(s)	142, 923
HpyAV	CCTTC	1 cut(s)	821
HpyCH4III	ACNGT	2 cut(s)	304, 613
HpyCH4IV	ACGT	2 cut(s)	138, 528
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 107, 195, 635, 1089
HpyF3I	CTNAG	6 cut(s)	92, 444, 584, 780, 931, 1065
HpySE526I	ACGT	2 cut(s)	138, 528
HspAI	GCGC	1 cut(s)	1090
Kzo9I	GATC	1 cut(s)	653
LguI	GCTCTTC	2 cut(s)	426, 954
LmnI	GCTCC	5 cut(s)	151, 318, 522, 862, 895
Lsp1109I	GCAGC	2 cut(s)	113, 243
LweI	GCATC	2 cut(s)	237, 616
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	2 cut(s)	138, 528
MaeIII	GTNAC	3 cut(s)	68, 511, 672
MalI	GATC	1 cut(s)	655
MboI	GATC	1 cut(s)	653
MhlI	GDGCHC	5 cut(s)	421, 476, 620, 892, 1044
MlsI	TGGCCA	5 cut(s)	11, 168, 717, 789, 1029
MluCI	AATT	5 cut(s)	44, 412, 699, 734, 844
MluNI	TGGCCA	5 cut(s)	11, 168, 717, 789, 1029
MlyI	GAGTC	2 cut(s)	183, 443
MmeI	TCCRAC	2 cut(s)	604, 922
MnlI	CCTC	6 cut(s)	72, 347, 453, 714, 817, 903
Mox20I	TGGCCA	5 cut(s)	11, 168, 717, 789, 1029
MscI	TGGCCA	5 cut(s)	11, 168, 717, 789, 1029
MseI	TTAA	1 cut(s)	857
MslI	CAYNNNNRTG	2 cut(s)	137, 245
Msp20I	TGGCCA	5 cut(s)	11, 168, 717, 789, 1029
MspA1I	CMGCKG	1 cut(s)	104
MspCI	CTTAAG	1 cut(s)	856
MspR9I	CCNGG	2 cut(s)	149, 981
MvaI	CCWGG	2 cut(s)	149, 981
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	5 cut(s)	17, 107, 195, 635, 1089
NcoI	CCATGG	2 cut(s)	15, 169
NdeII	GATC	1 cut(s)	653
NlaIV	GGNNCC	2 cut(s)	777, 1062
NmuCI	GTSAC	1 cut(s)	511
PaeR7I	CTCGAG	1 cut(s)	894
PagI	TCATGA	2 cut(s)	424, 991
PciSI	GCTCTTC	2 cut(s)	426, 954
PfeI	GAWTC	3 cut(s)	479, 566, 1070
PflFI	GACNNNGTC	1 cut(s)	527
PflMI	CCANNNNNTGG	4 cut(s)	288, 490, 713, 771
PkrI	GCNGC	2 cut(s)	103, 233
PleI	GAGTC	2 cut(s)	182, 443
PpsI	GAGTC	2 cut(s)	182, 443
PpuMI	RGGWCCY	1 cut(s)	776
Psp124BI	GAGCTC	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	776
Psp6I	CCWGG	2 cut(s)	147, 979
PspEI	GGTNACC	1 cut(s)	672
PspGI	CCWGG	2 cut(s)	147, 979
PspN4I	GGNNCC	2 cut(s)	777, 1062
PspPI	GGNCC	2 cut(s)	776, 1061
PspPPI	RGGWCCY	1 cut(s)	776
PsyI	GACNNNGTC	1 cut(s)	527
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	3 cut(s)	64, 84, 506
RsaNI	GTAC	3 cut(s)	63, 83, 505
RseI	CAYNNNNRTG	2 cut(s)	137, 245
SacI	GAGCTC	1 cut(s)	620
SapI	GCTCTTC	2 cut(s)	426, 954
SaqAI	TTAA	1 cut(s)	857
SatI	GCNGC	2 cut(s)	102, 232
Sau3AI	GATC	1 cut(s)	653
Sau96I	GGNCC	2 cut(s)	776, 1061
SchI	GAGTC	2 cut(s)	183, 443
ScrFI	CCNGG	2 cut(s)	149, 981
SduI	GDGCHC	5 cut(s)	421, 476, 620, 892, 1044
SfaNI	GCATC	2 cut(s)	237, 616
SfcI	CTRYAG	1 cut(s)	1000
Sfr274I	CTCGAG	1 cut(s)	894
SinI	GGWCC	1 cut(s)	776
SlaI	CTCGAG	1 cut(s)	894
SmiMI	CAYNNNNRTG	2 cut(s)	137, 245
SmlI	CTYRAG	3 cut(s)	856, 894, 985
SmoI	CTYRAG	3 cut(s)	856, 894, 985
Sse9I	AATT	5 cut(s)	44, 412, 699, 734, 844
SsiI	CCGC	1 cut(s)	1083
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	620
StyD4I	CCNGG	2 cut(s)	147, 979
StyI	CCWWGG	4 cut(s)	15, 169, 184, 349
TaaI	ACNGT	2 cut(s)	304, 613
TaiI	ACGT	2 cut(s)	141, 531
TaqI	TCGA	2 cut(s)	874, 895
TasI	AATT	5 cut(s)	44, 412, 699, 734, 844
TatI	WGTACW	2 cut(s)	62, 504
TfiI	GAWTC	3 cut(s)	479, 566, 1070
Tru1I	TTAA	1 cut(s)	857
Tru9I	TTAA	1 cut(s)	857
TscAI	CASTG	4 cut(s)	307, 481, 618, 892
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	2 cut(s)	101, 231
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	3 cut(s)	387, 413, 1008
TspRI	CASTG	4 cut(s)	307, 481, 618, 892
Tth111I	GACNNNGTC	1 cut(s)	527
Van91I	CCANNNNNTGG	4 cut(s)	288, 490, 713, 771
Vha464I	CTTAAG	1 cut(s)	856
VpaK11BI	GGWCC	1 cut(s)	776
XapI	RAATTY	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191
XhoI	CTCGAG	1 cut(s)	894
XmiI	GTMKAC	1 cut(s)	922
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.