MD14G1002400.v1.1

photosynthetic electron transport in photosystem I

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
361378 .. 363313
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1002400.v1.1.491

Sequence Viewer

Length: 1251 bp
ATGGCGGCTTTCAGTCCGTTTTTGTCACCCAACAGTTTCACTCCTCTCTCTGGTACTGCTAAACACACAGACTACCATTCATCTTCTTCTTGTTTGAGTAGGTTGCTGCAGCAGCACTTGTGCAAAACTACTACCACTAGTACTAGTAACAACAGCAAGAAGAGAGAATTCCCAGCTGCGTCAGTGGCGGCTTCAAGTTCAATTTCTTTCCCCTACCAACCACCTATCAACGTGGACTACTTGGAGCAAGAGTTCAGCGGCCATGGAGTAGTCTTCAAGGCCATTGGCGACAGCTGTGTGGCTAAGATGGAACTGGACAATGGAAGTAAAGCCATCATGATGCTCCCAAGTGGCCTTATCACCTCCTACAAGGCTTCCATGTGGCATGGCGGCACTGTCGAGCTGCTGCAGTCTTCAGTCTCCGGATCGGAGGAGAATGGTGTCGGCGGTGCCGCTGCCGCCATAGCCATTCAAGGAGGGGTGTCTTTAGCCTTTGACTGTTCGAGTGAGGTGGGTCAACAAGTTCCTTGGTCGCCGACTAACTGGGCTCTTCATCAAATTACAGGGAATCCTCAGGATCACATTCAGGTAGAACTGATTAGCACAGATTCAGAGGACATGATTGAAATCAAATACATTATCACTCTCAAACAAGATGTCTTAATCTCAGAGATTGTAGTCTCTAATTCTACATCTTCGTCGCTCCAACTAACCGGCTCTATTTTAAGTCATCTGACGGTAAGCTCACCGGATGCAACTTATGCTATTGGTTTGGAAAGATCAGATTTCTTTACCAGGTTGCCAATTTTGTCAAGTTTTGGTATCATTCCTCCCGACTTTGGCATGAAAAATGAAGCTCAGATCAGCAAACTATGGCAGCAAATGGCTGGCTGGGGCCCAAATAATCAAAATGATGGCAAACAAGCAGATACAAATCAGAGAGGAAATAATGAAGAAGAAATGGAGGGTGAAGAAGATGACAACTATAAGCATTTAAGAGAGCAAATGAGCCGAATATACACCAGTGCCCCTACCGACTTCACAATCATTGACAGGGGTAGAAGAAACTCAGTGGTAGTAGGAAGAGATGGGTTTGATGAACTATACATGTTCAGTCCTGGCTCGAGCCATGAAGACTATGGCAAGTATGCTTATATATGTGTTGGCCAATCTGCCGTGCTAAAACCAATAATTGTACATCCTAATGAATCATGGAGGGGCGGACAGCGCTTATACAACCCCAATCTCTAA

Protein Analysis

417

Amino Acids

45.37

Weight (kDa)

5.09

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AccIII TCCGGA 1 cut(s) 422
AciI CCGC 8 cut(s) 5, 188, 258, 390, 447, 453, 459, 1221
AclWI GGATC 2 cut(s) 433, 585
AcoI YGGCCR 2 cut(s) 259, 1165
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 3 cut(s) 55, 142, 1197
AfeI AGCGCT 1 cut(s) 1229
AfiI CCNNNNNNNGG 2 cut(s) 50, 839
AflIII ACRYGT 1 cut(s) 1107
AgsI TTSAA 5 cut(s) 195, 201, 277, 473, 626
AhlI ACTAGT 2 cut(s) 137, 143
AjnI CCWGG 2 cut(s) 794, 1117
AloI GAACNNNNNNTCC 2 cut(s) 236, 268
AluBI AGCT 5 cut(s) 176, 294, 403, 744, 857
AluI AGCT 5 cut(s) 176, 294, 403, 744, 857
Alw26I GTCTC 2 cut(s) 424, 685
AlwI GGATC 2 cut(s) 433, 585
Ama87I CYCGRG 1 cut(s) 1123
Aor13HI TCCGGA 1 cut(s) 422
Aor51HI AGCGCT 1 cut(s) 1229
AoxI GGCC 5 cut(s) 259, 279, 352, 895, 1165
ApaI GGGCCC 1 cut(s) 899
ApeKI GCWGC 8 cut(s) 106, 109, 112, 176, 403, 406, 455, 877
ApoI RAATTY 1 cut(s) 167
ArsI GACNNNNNNTTYG 2 cut(s) 642, 674
AspLEI GCGC 1 cut(s) 1230
AspS9I GGNCC 2 cut(s) 895, 896
AsuHPI GGTGA 4 cut(s) 18, 352, 738, 980
AvaI CYCGRG 1 cut(s) 1123
AxyI CCTNAGG 1 cut(s) 573
BaeGI GKGCMC 2 cut(s) 899, 1030
BalI TGGCCA 1 cut(s) 1167
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 2 cut(s) 550, 899
BbsI GAAGAC 3 cut(s) 265, 405, 1140
BbvI GCAGC 8 cut(s) 93, 121, 124, 163, 390, 393, 442, 889
BccI CCATC 4 cut(s) 301, 341, 908, 1082
BceAI ACGGC 1 cut(s) 1160
BciT130I CCWGG 2 cut(s) 796, 1119
BcoDI GTCTC 2 cut(s) 424, 685
BcuI ACTAGT 2 cut(s) 137, 143
BfaI CTAG 2 cut(s) 138, 144
BfmI CTRYAG 2 cut(s) 107, 407
BfoI RGCGCY 1 cut(s) 1231
BmcAI AGTACT 1 cut(s) 142
Bme1390I CCNGG 2 cut(s) 796, 1119
BmeT110I CYCGRG 1 cut(s) 1123
BmgT120I GGNCC 2 cut(s) 895, 896
BmiI GGNNCC 3 cut(s) 451, 896, 897
BmrFI CCNGG 2 cut(s) 796, 1119
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 2 cut(s) 330, 742
BmuI ACTGGG 1 cut(s) 553
BpiI GAAGAC 3 cut(s) 265, 405, 1140
BsaBI GATNNNNATC 2 cut(s) 626, 933
BsaJI CCNNGG 2 cut(s) 262, 527
BsaWI WCCGGW 2 cut(s) 422, 748
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 839
Bse118I RCCGGY 1 cut(s) 713
Bse1I ACTGG 3 cut(s) 318, 548, 1023
Bse21I CCTNAGG 1 cut(s) 573
Bse8I GATNNNNATC 2 cut(s) 626, 933
BseAI TCCGGA 1 cut(s) 422
BseBI CCWGG 2 cut(s) 796, 1119
BseDI CCNNGG 2 cut(s) 262, 527
BseGI GGATG 2 cut(s) 757, 1198
BseJI GATNNNNATC 2 cut(s) 626, 933
BseLI CCNNNNNNNGG 2 cut(s) 50, 839
BseMII CTCAG 4 cut(s) 587, 681, 872, 1083
BseNI ACTGG 3 cut(s) 318, 548, 1023
BseRI GAGGAG 2 cut(s) 33, 446
BseSI GKGCMC 2 cut(s) 899, 1030
BseXI GCAGC 8 cut(s) 93, 121, 124, 163, 390, 393, 442, 889
BseYI CCCAGC 2 cut(s) 172, 891
BshFI GGCC 5 cut(s) 261, 281, 354, 897, 1167
BshNI GGYRCC 1 cut(s) 449
BsiHKCI CYCGRG 1 cut(s) 1123
BsiSI CCGG 3 cut(s) 423, 714, 749
BslI CCNNNNNNNGG 2 cut(s) 50, 839
BsmAI GTCTC 2 cut(s) 424, 685
BsnI GGCC 5 cut(s) 261, 281, 354, 897, 1167
BsoBI CYCGRG 1 cut(s) 1123
Bsp120I GGGCCC 1 cut(s) 895
Bsp1286I GDGCHC 3 cut(s) 550, 899, 1030
Bsp13I TCCGGA 1 cut(s) 422
Bsp1407I TGTACA 1 cut(s) 1195
Bsp143I GATC 4 cut(s) 425, 577, 779, 861
Bsp19I CCATGG 1 cut(s) 262
BspACI CCGC 8 cut(s) 5, 188, 258, 390, 447, 453, 459, 1221
BspANI GGCC 5 cut(s) 261, 281, 354, 897, 1167
BspCNI CTCAG 4 cut(s) 586, 680, 871, 1082
BspEI TCCGGA 1 cut(s) 422
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 3 cut(s) 451, 896, 897
BspMAI CTGCAG 2 cut(s) 111, 411
BspPI GGATC 2 cut(s) 433, 585
BspQI GCTCTTC 1 cut(s) 555
BspT107I GGYRCC 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 713
BsrGI TGTACA 1 cut(s) 1195
BsrI ACTGG 3 cut(s) 318, 548, 1023
BssAI RCCGGY 1 cut(s) 713
BssECI CCNNGG 2 cut(s) 262, 527
BssMI GATC 4 cut(s) 425, 577, 779, 861
BssT1I CCWWGG 2 cut(s) 262, 527
Bst2UI CCWGG 2 cut(s) 796, 1119
Bst4CI ACNGT 4 cut(s) 35, 397, 500, 739
Bst6I CTCTTC 3 cut(s) 155, 555, 1078
BstAPI GCANNNNNTGC 1 cut(s) 761
BstAUI TGTACA 1 cut(s) 1195
BstC8I GCNNGC 1 cut(s) 889
BstDEI CTNAG 5 cut(s) 303, 573, 667, 858, 1069
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 2 cut(s) 757, 1198
BstH2I RGCGCY 1 cut(s) 1231
BstHHI GCGC 1 cut(s) 1230
BstKTI GATC 4 cut(s) 428, 580, 782, 864
BstMAI GTCTC 2 cut(s) 424, 685
BstMBI GATC 4 cut(s) 425, 577, 779, 861
BstMWI GCNNNNNNNGC 6 cut(s) 112, 185, 458, 464, 761, 1227
BstNI CCWGG 2 cut(s) 796, 1119
BstNSI RCATGY 1 cut(s) 1111
BstSCI CCNGG 2 cut(s) 794, 1117
BstSFI CTRYAG 2 cut(s) 107, 407
BstSLI GKGCMC 2 cut(s) 899, 1030
BstV1I GCAGC 8 cut(s) 93, 121, 124, 163, 390, 393, 442, 889
BstV2I GAAGAC 3 cut(s) 265, 405, 1140
Bsu36I CCTNAGG 1 cut(s) 573
BsuRI GGCC 5 cut(s) 261, 281, 354, 897, 1167
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 2 cut(s) 757, 1198
BtsIMutI CAGTG 4 cut(s) 189, 393, 1030, 1077
Cac8I GCNNGC 1 cut(s) 889
CciI TCATGA 1 cut(s) 336
CfoI GCGC 1 cut(s) 1230
Cfr10I RCCGGY 1 cut(s) 713
Cfr13I GGNCC 2 cut(s) 895, 896
CseI GACGC 1 cut(s) 168
CsiI ACCWGGT 1 cut(s) 794
Csp6I GTAC 3 cut(s) 54, 141, 1196
CviAII CATG 9 cut(s) 263, 337, 379, 386, 619, 844, 1108, 1130, 1212
CviQI GTAC 3 cut(s) 54, 141, 1196
DdeI CTNAG 5 cut(s) 303, 573, 667, 858, 1069
DpnI GATC 4 cut(s) 427, 579, 781, 863
DpnII GATC 4 cut(s) 425, 577, 779, 861
EaeI YGGCCR 2 cut(s) 259, 1165
Eam1104I CTCTTC 3 cut(s) 155, 555, 1078
EarI CTCTTC 3 cut(s) 155, 555, 1078
EciI GGCGGA 1 cut(s) 1236
Eco130I CCWWGG 2 cut(s) 262, 527
Eco24I GRGCYC 2 cut(s) 550, 899
Eco47III AGCGCT 1 cut(s) 1229
Eco57I CTGAAG 1 cut(s) 399
Eco81I CCTNAGG 1 cut(s) 573
Eco88I CYCGRG 1 cut(s) 1123
EcoO109I RGGNCCY 1 cut(s) 895
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 794, 1117
EcoT14I CCWWGG 2 cut(s) 262, 527
EcoT38I GRGCYC 2 cut(s) 550, 899
ErhI CCWWGG 2 cut(s) 262, 527
FaeI CATG 9 cut(s) 266, 340, 382, 389, 622, 847, 1111, 1133, 1215
FatI CATG 9 cut(s) 262, 336, 378, 385, 618, 843, 1107, 1129, 1211
FokI GGATG 2 cut(s) 764, 1185
FriOI GRGCYC 2 cut(s) 550, 899
FspBI CTAG 2 cut(s) 138, 144
GlaI GCGC 1 cut(s) 1229
GsaI CCCAGC 2 cut(s) 176, 895
HaeII RGCGCY 1 cut(s) 1231
HaeIII GGCC 5 cut(s) 261, 281, 354, 897, 1167
HapII CCGG 3 cut(s) 423, 714, 749
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 1230
Hin1II CATG 9 cut(s) 266, 340, 382, 389, 622, 847, 1111, 1133, 1215
Hin6I GCGC 1 cut(s) 1228
HinP1I GCGC 1 cut(s) 1228
HincII GTYRAC 1 cut(s) 518
HindII GTYRAC 1 cut(s) 518
HinfI GANTC 3 cut(s) 568, 608, 1208
HpaII CCGG 3 cut(s) 423, 714, 749
HphI GGTGA 4 cut(s) 18, 352, 738, 980
Hpy166II GTNNAC 2 cut(s) 235, 518
Hpy188I TCNGA 7 cut(s) 430, 613, 670, 735, 784, 861, 939
Hpy188III TCNNGA 4 cut(s) 337, 423, 575, 833
Hpy8I GTNNAC 2 cut(s) 235, 518
Hpy99I CGWCG 1 cut(s) 703
HpyCH4III ACNGT 4 cut(s) 35, 397, 500, 739
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 4 cut(s) 109, 123, 409, 755
HpyF10VI GCNNNNNNNGC 6 cut(s) 112, 185, 458, 464, 761, 1227
HpyF3I CTNAG 5 cut(s) 303, 573, 667, 858, 1069
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 9 cut(s) 266, 340, 382, 389, 622, 847, 1111, 1133, 1215
HspAI GCGC 1 cut(s) 1228
Kpn2I TCCGGA 1 cut(s) 422
Kzo9I GATC 4 cut(s) 425, 577, 779, 861
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 3 cut(s) 244, 348, 708
Lsp1109I GCAGC 8 cut(s) 93, 121, 124, 163, 390, 393, 442, 889
LweI GCATC 2 cut(s) 330, 742
MabI ACCWGGT 1 cut(s) 794
MaeI CTAG 2 cut(s) 138, 144
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 24, 146
MalI GATC 4 cut(s) 427, 579, 781, 863
MboI GATC 4 cut(s) 425, 577, 779, 861
MhlI GDGCHC 3 cut(s) 550, 899, 1030
MlsI TGGCCA 1 cut(s) 1167
MluCI AATT 6 cut(s) 167, 201, 558, 685, 804, 1191
MluNI TGGCCA 1 cut(s) 1167
MmeI TCCRAC 1 cut(s) 730
Mox20I TGGCCA 1 cut(s) 1167
MroI TCCGGA 1 cut(s) 422
MscI TGGCCA 1 cut(s) 1167
MseI TTAA 3 cut(s) 662, 725, 995
MslI CAYNNNNRTG 2 cut(s) 338, 1203
Msp20I TGGCCA 1 cut(s) 1167
MspA1I CMGCKG 4 cut(s) 176, 258, 294, 455
MspI CCGG 3 cut(s) 423, 714, 749
MspR9I CCNGG 2 cut(s) 796, 1119
MvaI CCWGG 2 cut(s) 796, 1119
MwoI GCNNNNNNNGC 6 cut(s) 112, 185, 458, 464, 761, 1227
NcoI CCATGG 1 cut(s) 262
NdeII GATC 4 cut(s) 425, 577, 779, 861
NlaIII CATG 9 cut(s) 266, 340, 382, 389, 622, 847, 1111, 1133, 1215
NlaIV GGNNCC 3 cut(s) 451, 896, 897
NmuCI GTSAC 1 cut(s) 24
NspI RCATGY 1 cut(s) 1111
PaeR7I CTCGAG 1 cut(s) 1123
PagI TCATGA 1 cut(s) 336
PciI ACATGT 1 cut(s) 1107
PciSI GCTCTTC 1 cut(s) 555
PfeI GAWTC 3 cut(s) 568, 608, 1208
PscI ACATGT 1 cut(s) 1107
Psp6I CCWGG 2 cut(s) 794, 1117
PspFI CCCAGC 2 cut(s) 172, 891
PspGI CCWGG 2 cut(s) 794, 1117
PspN4I GGNNCC 3 cut(s) 451, 896, 897
PspOMI GGGCCC 1 cut(s) 895
PspPI GGNCC 2 cut(s) 895, 896
PspXI VCTCGAGB 1 cut(s) 1123
PstI CTGCAG 2 cut(s) 111, 411
PvuII CAGCTG 2 cut(s) 176, 294
RsaI GTAC 3 cut(s) 55, 142, 1197
RsaNI GTAC 3 cut(s) 54, 141, 1196
RseI CAYNNNNRTG 2 cut(s) 338, 1203
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 3 cut(s) 662, 725, 995
Sau3AI GATC 4 cut(s) 425, 577, 779, 861
Sau96I GGNCC 2 cut(s) 895, 896
ScaI AGTACT 1 cut(s) 142
ScrFI CCNGG 2 cut(s) 796, 1119
SduI GDGCHC 3 cut(s) 550, 899, 1030
SexAI ACCWGGT 1 cut(s) 794
SfaNI GCATC 2 cut(s) 330, 742
SfcI CTRYAG 2 cut(s) 107, 407
Sfr274I CTCGAG 1 cut(s) 1123
SlaI CTCGAG 1 cut(s) 1123
SmiMI CAYNNNNRTG 2 cut(s) 338, 1203
SmlI CTYRAG 1 cut(s) 1123
SmoI CTYRAG 1 cut(s) 1123
SpeI ACTAGT 2 cut(s) 137, 143
Sse9I AATT 6 cut(s) 167, 201, 558, 685, 804, 1191
SsiI CCGC 8 cut(s) 5, 188, 258, 390, 447, 453, 459, 1221
SspMI CTAG 2 cut(s) 138, 144
StyD4I CCNGG 2 cut(s) 794, 1117
StyI CCWWGG 2 cut(s) 262, 527
TaaI ACNGT 4 cut(s) 35, 397, 500, 739
TaiI ACGT 1 cut(s) 234
TaqI TCGA 3 cut(s) 399, 503, 1124
TasI AATT 6 cut(s) 167, 201, 558, 685, 804, 1191
TatI WGTACW 2 cut(s) 140, 1195
TauI GCSGC 6 cut(s) 8, 191, 261, 393, 455, 461
TfiI GAWTC 3 cut(s) 568, 608, 1208
Tru1I TTAA 3 cut(s) 662, 725, 995
Tru9I TTAA 3 cut(s) 662, 725, 995
TscAI CASTG 4 cut(s) 189, 400, 1030, 1077
TseFI GTSAC 1 cut(s) 24
TseI GCWGC 8 cut(s) 106, 109, 112, 176, 403, 406, 455, 877
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 8 cut(s) 69, 542, 860, 867, 966, 1113, 1146, 1221
TspGWI ACGGA 1 cut(s) 6
TspRI CASTG 4 cut(s) 189, 400, 1030, 1077
XapI RAATTY 1 cut(s) 167
XceI RCATGY 1 cut(s) 1111
XcmI CCANNNNNNNNNTGG 1 cut(s) 1136
XhoI CTCGAG 1 cut(s) 1123
XspI CTAG 2 cut(s) 138, 144
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.