RLG00000022473

photosynthetic electron transport in photosystem I

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
1169741 .. 1171109
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022473

Sequence Viewer

Length: 1143 bp
ATGGCAATGACCACCGTGGCTTCCAGTCCATTTTTGTTATCCAAATCCCGCCCTTGCTCTTGTACTAATTACAACAAGAGGGGATTCCCACTTAGAGTTGCAGCTGTTGCTTCAATCCCATTTCAACAACCCATCAACGTGGACTACCTGGAACAAGAGTTCAGTGGCCATGGAGTGGTATTCAAAGGCATTGGTGACGATTGCGTTGCCAAGATGAGTCTTGATAATGGCAGCAAAGCCATCTTGATGCTGCCAAGTGGCCTAATCGCGTCCTACAAAGCCTCCATGTGGCATGGCGGCACTGTTGAGTTGCTCCAATCTTCAGTCTCCCAAGAAGAAGAAGAAGAAGAAGAAGAAGCCAATAGCATCCGAGGAGGGGTGTCTGTGGCTTTGGAATGTCTCGGTCTCGGTCAAGAACAATTTTCGTGGTCTCCAAGTAATTGGGCTCTTCATGACATCACAGGAAATCCTCAGGACTCTATTCAGGTAGAACTGATCAGCACTGATTCCCATGACATGGTTCAAGTCAAGTACATTGTGACTCTCCAAGACGACGTCCTAATCTCACAGCTTATGGTCTCTAATAACTCGGATTCTTCACCACTCCAACTAAGTGGGTGTATTTTAAGCCATCTGACAGTAAGCTCACCAGATGCTACATACGCAGTTGGTTTGGAAAGTTCAGATTTCTTTGGCAGGTTACCCATTTTGACAGGTTCAGCTATAATTCCTCCAGATTGTGGCCAGAAAAGTGAATCTCAATTCAGCCAACTATGGAAACAATTGGCATCCAATGGTTGGGGTCCTAAGAATGGGCACCAAACAGAAACTGAACAGGAAGAAGAAGAAATGGAGGAAGGGGAAGAAGATGACAATTATAAGAACTTAAGGGAGCAAATGTGTCGAATATACACCAGTGCGCCTCGAGACTTCACAATCATTGACAGGGGTAGACGAAACTCAGTGGTGGTTGGAAGAGATGGGTTTGAAGAGCTATACATGTTCAGCCCTGGCTCAAGTCATGAATACTACGGCGAATATGCTTATATCTGCATTGGCCAGTCGGCAGTGCTCAATCCAATAATCTTGGGGCCTAAGGAATCATGGACAGGTGGACAGCACTTGCACAATCCAAATCTCTAA

Protein Analysis

381

Amino Acids

41.77

Weight (kDa)

4.57

Isoelectric Point (pI)

61.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
AatII GACGTC 1 cut(s) 558
Acc36I ACCTGC 1 cut(s) 687
AccB1I GGYRCC 1 cut(s) 816
AccB7I CCANNNNNTGG 4 cut(s) 175, 517, 740, 798
AccI GTMKAC 1 cut(s) 952
AccII CGCG 1 cut(s) 269
AciI CCGC 2 cut(s) 49, 297
AcoI YGGCCR 3 cut(s) 166, 742, 1057
AcuI CTGAAG 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 555
AfaI GTAC 2 cut(s) 64, 533
AfiI CCNNNNNNNGG 7 cut(s) 175, 288, 376, 517, 740, 798, 812
AflII CTTAAG 1 cut(s) 886
AflIII ACRYGT 1 cut(s) 999
AgsI TTSAA 5 cut(s) 114, 125, 184, 524, 989
AjnI CCWGG 2 cut(s) 147, 1009
AloI GAACNNNNNNTCC 2 cut(s) 143, 175
AluBI AGCT 5 cut(s) 104, 571, 645, 722, 994
AluI AGCT 5 cut(s) 104, 571, 645, 722, 994
Alw21I GWGCWC 1 cut(s) 1074
Alw26I GTCTC 6 cut(s) 331, 404, 410, 435, 583, 921
AlwNI CAGNNNCTG 1 cut(s) 830
Ama87I CYCGRG 1 cut(s) 924
AoxI GGCC 5 cut(s) 166, 259, 742, 1057, 1091
ApeKI GCWGC 3 cut(s) 101, 231, 250
AspLEI GCGC 1 cut(s) 922
AspS9I GGNCC 2 cut(s) 803, 1091
AsuHPI GGTGA 3 cut(s) 206, 591, 639
AvaI CYCGRG 1 cut(s) 924
AvaII GGWCC 1 cut(s) 803
AxyI CCTNAGG 2 cut(s) 471, 1095
BaeGI GKGCMC 1 cut(s) 819
BalI TGGCCA 3 cut(s) 168, 744, 1059
BanI GGYRCC 1 cut(s) 816
BanII GRGCYC 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 1074
BbvI GCAGC 3 cut(s) 113, 237, 243
BccI CCATC 4 cut(s) 140, 248, 639, 974
BceAI ACGGC 1 cut(s) 1048
BcgI CGANNNNNNTGC 4 cut(s) 188, 222, 884, 918
BciT130I CCWGG 2 cut(s) 149, 1011
BclI TGATCA 1 cut(s) 495
BcoDI GTCTC 6 cut(s) 331, 404, 410, 435, 583, 921
BfrI CTTAAG 1 cut(s) 886
BfuAI ACCTGC 1 cut(s) 687
BisI GCNGC 4 cut(s) 102, 232, 251, 298
BlsI GCNGC 4 cut(s) 103, 233, 252, 299
Bme1390I CCNGG 2 cut(s) 149, 1011
Bme18I GGWCC 1 cut(s) 803
BmeT110I CYCGRG 1 cut(s) 924
BmgT120I GGNCC 2 cut(s) 803, 1091
BmiI GGNNCC 3 cut(s) 804, 818, 1092
BmrFI CCNGG 2 cut(s) 149, 1011
BmsI GCATC 4 cut(s) 237, 375, 643, 797
BpmI CTGGAG 1 cut(s) 717
BpuEI CTTGAG 1 cut(s) 1000
BsaHI GRCGYC 1 cut(s) 555
BsaI GGTCTC 3 cut(s) 410, 435, 583
BsaJI CCNNGG 4 cut(s) 15, 169, 370, 1009
BsaXI ACNNNNNCTCC 4 cut(s) 266, 296, 884, 914
Bsc4I CCNNNNNNNGG 7 cut(s) 175, 288, 376, 517, 740, 798, 812
Bse1I ACTGG 3 cut(s) 24, 915, 1060
Bse21I CCTNAGG 2 cut(s) 471, 1095
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 2 cut(s) 149, 1011
BseDI CCNNGG 4 cut(s) 15, 169, 370, 1009
BseGI GGATG 2 cut(s) 366, 788
BseLI CCNNNNNNNGG 7 cut(s) 175, 288, 376, 517, 740, 798, 812
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 485, 975
BseNI ACTGG 3 cut(s) 24, 915, 1060
BseRI GAGGAG 1 cut(s) 387
BseSI GKGCMC 1 cut(s) 819
BseXI GCAGC 3 cut(s) 113, 237, 243
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 5 cut(s) 168, 261, 744, 1059, 1093
BshNI GGYRCC 1 cut(s) 816
BsiHKAI GWGCWC 1 cut(s) 1074
BsiHKCI CYCGRG 1 cut(s) 924
BslI CCNNNNNNNGG 7 cut(s) 175, 288, 376, 517, 740, 798, 812
BsmAI GTCTC 6 cut(s) 331, 404, 410, 435, 583, 921
BsnI GGCC 5 cut(s) 168, 261, 744, 1059, 1093
Bso31I GGTCTC 3 cut(s) 410, 435, 583
BsoBI CYCGRG 1 cut(s) 924
Bsp1286I GDGCHC 3 cut(s) 448, 819, 1074
Bsp143I GATC 1 cut(s) 495
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 2 cut(s) 49, 297
BspANI GGCC 5 cut(s) 168, 261, 744, 1059, 1093
BspCNI CTCAG 2 cut(s) 484, 974
BspFNI CGCG 1 cut(s) 269
BspHI TCATGA 2 cut(s) 451, 1021
BspLI GGNNCC 3 cut(s) 804, 818, 1092
BspMI ACCTGC 1 cut(s) 687
BspQI GCTCTTC 2 cut(s) 453, 984
BspT107I GGYRCC 1 cut(s) 816
BspTI CTTAAG 1 cut(s) 886
BspTNI GGTCTC 3 cut(s) 410, 435, 583
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 3 cut(s) 24, 915, 1060
BssECI CCNNGG 4 cut(s) 15, 169, 370, 1009
BssMI GATC 1 cut(s) 495
BssNI GRCGYC 1 cut(s) 555
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 2 cut(s) 149, 1011
Bst4CI ACNGT 3 cut(s) 16, 304, 640
Bst6I CTCTTC 3 cut(s) 453, 970, 984
BstACI GRCGYC 1 cut(s) 555
BstAFI CTTAAG 1 cut(s) 886
BstAPI GCANNNNNTGC 1 cut(s) 107
BstDEI CTNAG 6 cut(s) 92, 471, 611, 807, 961, 1095
BstDSI CCRYGG 2 cut(s) 15, 169
BstEII GGTNACC 1 cut(s) 699
BstF5I GGATG 2 cut(s) 366, 788
BstFNI CGCG 1 cut(s) 269
BstHHI GCGC 1 cut(s) 922
BstKTI GATC 1 cut(s) 498
BstMAI GTCTC 6 cut(s) 331, 404, 410, 435, 583, 921
BstMBI GATC 1 cut(s) 495
BstMWI GCNNNNNNNGC 2 cut(s) 107, 662
BstNI CCWGG 2 cut(s) 149, 1011
BstNSI RCATGY 1 cut(s) 1003
BstPI GGTNACC 1 cut(s) 699
BstSCI CCNGG 2 cut(s) 147, 1009
BstSLI GKGCMC 1 cut(s) 819
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 113, 237, 243
BstXI CCANNNNNNTGG 3 cut(s) 139, 441, 614
Bsu36I CCTNAGG 2 cut(s) 471, 1095
BsuRI GGCC 5 cut(s) 168, 261, 744, 1059, 1093
BtgI CCRYGG 2 cut(s) 15, 169
BtsCI GGATG 2 cut(s) 366, 788
BtsI GCAGTG 1 cut(s) 1074
BtsIMutI CAGTG 6 cut(s) 169, 300, 501, 922, 969, 1074
BveI ACCTGC 1 cut(s) 687
CaiI CAGNNNCTG 1 cut(s) 830
CciI TCATGA 2 cut(s) 451, 1021
CfoI GCGC 1 cut(s) 922
Cfr13I GGNCC 2 cut(s) 803, 1091
CseI GACGC 1 cut(s) 258
Csp6I GTAC 2 cut(s) 63, 532
CspCI CAANNNNNGTGG 2 cut(s) 407, 442
CviAII CATG 9 cut(s) 170, 286, 293, 452, 512, 517, 1000, 1022, 1104
CviQI GTAC 2 cut(s) 63, 532
DdeI CTNAG 6 cut(s) 92, 471, 611, 807, 961, 1095
DpnI GATC 1 cut(s) 497
DpnII GATC 1 cut(s) 495
EaeI YGGCCR 3 cut(s) 166, 742, 1057
Eam1104I CTCTTC 3 cut(s) 453, 970, 984
EarI CTCTTC 3 cut(s) 453, 970, 984
Eco130I CCWWGG 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 448
Eco31I GGTCTC 3 cut(s) 410, 435, 583
Eco47I GGWCC 1 cut(s) 803
Eco57I CTGAAG 1 cut(s) 306
Eco81I CCTNAGG 2 cut(s) 471, 1095
Eco88I CYCGRG 1 cut(s) 924
Eco91I GGTNACC 1 cut(s) 699
EcoO109I RGGNCCY 2 cut(s) 803, 1091
EcoO65I GGTNACC 1 cut(s) 699
EcoRII CCWGG 2 cut(s) 147, 1009
EcoT14I CCWWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 9 cut(s) 173, 289, 296, 455, 515, 520, 1003, 1025, 1107
FatI CATG 9 cut(s) 169, 285, 292, 451, 511, 516, 999, 1021, 1103
FauI CCCGC 1 cut(s) 56
FbaI TGATCA 1 cut(s) 495
FblI GTMKAC 1 cut(s) 952
Fnu4HI GCNGC 4 cut(s) 102, 232, 251, 298
FokI GGATG 2 cut(s) 353, 775
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 4 cut(s) 102, 232, 251, 298
GlaI GCGC 1 cut(s) 921
GluI GCNGC 4 cut(s) 102, 232, 251, 298
GsuI CTGGAG 1 cut(s) 717
HaeIII GGCC 5 cut(s) 168, 261, 744, 1059, 1093
HgaI GACGC 1 cut(s) 258
HhaI GCGC 1 cut(s) 922
Hin1I GRCGYC 1 cut(s) 555
Hin1II CATG 9 cut(s) 173, 289, 296, 455, 515, 520, 1003, 1025, 1107
Hin6I GCGC 1 cut(s) 920
HinP1I GCGC 1 cut(s) 920
HinfI GANTC 8 cut(s) 84, 217, 476, 506, 541, 593, 755, 1100
HphI GGTGA 3 cut(s) 206, 591, 639
Hpy166II GTNNAC 3 cut(s) 142, 953, 1115
Hpy188I TCNGA 4 cut(s) 371, 592, 636, 685
Hpy188III TCNNGA 8 cut(s) 221, 244, 413, 452, 473, 734, 926, 1022
Hpy8I GTNNAC 3 cut(s) 142, 953, 1115
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 1 cut(s) 851
HpyCH4III ACNGT 3 cut(s) 16, 304, 640
HpyCH4IV ACGT 2 cut(s) 138, 555
HpyCH4V TGCA 3 cut(s) 101, 1053, 1126
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 662
HpyF3I CTNAG 6 cut(s) 92, 471, 611, 807, 961, 1095
HpySE526I ACGT 2 cut(s) 138, 555
Hsp92I GRCGYC 1 cut(s) 555
Hsp92II CATG 9 cut(s) 173, 289, 296, 455, 515, 520, 1003, 1025, 1107
HspAI GCGC 1 cut(s) 920
Ksp22I TGATCA 1 cut(s) 495
Kzo9I GATC 1 cut(s) 495
LguI GCTCTTC 2 cut(s) 453, 984
LmnI GCTCC 2 cut(s) 318, 892
Lsp1109I GCAGC 3 cut(s) 113, 237, 243
LweI GCATC 4 cut(s) 237, 375, 643, 797
MaeII ACGT 2 cut(s) 138, 555
MaeIII GTNAC 3 cut(s) 194, 538, 699
MalI GATC 1 cut(s) 497
MboI GATC 1 cut(s) 495
MfeI CAATTG 1 cut(s) 782
MhlI GDGCHC 3 cut(s) 448, 819, 1074
MlsI TGGCCA 3 cut(s) 168, 744, 1059
MluCI AATT 7 cut(s) 67, 419, 439, 726, 761, 782, 874
MluNI TGGCCA 3 cut(s) 168, 744, 1059
MlyI GAGTC 3 cut(s) 226, 470, 535
MmeI TCCRAC 2 cut(s) 631, 952
MnlI CCTC 8 cut(s) 72, 292, 365, 368, 480, 741, 847, 933
Mox20I TGGCCA 3 cut(s) 168, 744, 1059
MscI TGGCCA 3 cut(s) 168, 744, 1059
MseI TTAA 2 cut(s) 626, 887
MslI CAYNNNNRTG 2 cut(s) 137, 245
Msp20I TGGCCA 3 cut(s) 168, 744, 1059
MspA1I CMGCKG 1 cut(s) 104
MspCI CTTAAG 1 cut(s) 886
MspR9I CCNGG 2 cut(s) 149, 1011
MunI CAATTG 1 cut(s) 782
MvaI CCWGG 2 cut(s) 149, 1011
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 107, 662
NcoI CCATGG 1 cut(s) 169
NdeII GATC 1 cut(s) 495
NlaIII CATG 9 cut(s) 173, 289, 296, 455, 515, 520, 1003, 1025, 1107
NlaIV GGNNCC 3 cut(s) 804, 818, 1092
NmuCI GTSAC 2 cut(s) 194, 538
NspI RCATGY 1 cut(s) 1003
PaeR7I CTCGAG 1 cut(s) 924
PagI TCATGA 2 cut(s) 451, 1021
PciI ACATGT 1 cut(s) 999
PciSI GCTCTTC 2 cut(s) 453, 984
PfeI GAWTC 5 cut(s) 84, 506, 593, 755, 1100
PflFI GACNNNGTC 1 cut(s) 554
PflMI CCANNNNNTGG 4 cut(s) 175, 517, 740, 798
PkrI GCNGC 4 cut(s) 103, 233, 252, 299
PleI GAGTC 3 cut(s) 225, 470, 535
PpsI GAGTC 3 cut(s) 225, 470, 535
PpuMI RGGWCCY 1 cut(s) 803
PscI ACATGT 1 cut(s) 999
PsiI TTATAA 1 cut(s) 879
Psp5II RGGWCCY 1 cut(s) 803
Psp6I CCWGG 2 cut(s) 147, 1009
PspEI GGTNACC 1 cut(s) 699
PspGI CCWGG 2 cut(s) 147, 1009
PspN4I GGNNCC 3 cut(s) 804, 818, 1092
PspPI GGNCC 2 cut(s) 803, 1091
PspPPI RGGWCCY 1 cut(s) 803
PstNI CAGNNNCTG 1 cut(s) 830
PsyI GACNNNGTC 1 cut(s) 554
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 2 cut(s) 64, 533
RsaNI GTAC 2 cut(s) 63, 532
RseI CAYNNNNRTG 2 cut(s) 137, 245
SapI GCTCTTC 2 cut(s) 453, 984
SaqAI TTAA 2 cut(s) 626, 887
SatI GCNGC 4 cut(s) 102, 232, 251, 298
Sau3AI GATC 1 cut(s) 495
Sau96I GGNCC 2 cut(s) 803, 1091
SchI GAGTC 3 cut(s) 226, 470, 535
ScrFI CCNGG 2 cut(s) 149, 1011
SduI GDGCHC 3 cut(s) 448, 819, 1074
SfaNI GCATC 4 cut(s) 237, 375, 643, 797
Sfr274I CTCGAG 1 cut(s) 924
SinI GGWCC 1 cut(s) 803
SlaI CTCGAG 1 cut(s) 924
SmiMI CAYNNNNRTG 2 cut(s) 137, 245
SmlI CTYRAG 3 cut(s) 886, 924, 1015
SmoI CTYRAG 3 cut(s) 886, 924, 1015
Sse9I AATT 7 cut(s) 67, 419, 439, 726, 761, 782, 874
SsiI CCGC 2 cut(s) 49, 297
StyD4I CCNGG 2 cut(s) 147, 1009
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 3 cut(s) 16, 304, 640
TaiI ACGT 2 cut(s) 141, 558
TaqI TCGA 2 cut(s) 904, 925
TaqII GACCGA 2 cut(s) 392, 398
TasI AATT 7 cut(s) 67, 419, 439, 726, 761, 782, 874
TatI WGTACW 2 cut(s) 62, 531
TauI GCSGC 1 cut(s) 300
TfiI GAWTC 5 cut(s) 84, 506, 593, 755, 1100
Tru1I TTAA 2 cut(s) 626, 887
Tru9I TTAA 2 cut(s) 626, 887
TscAI CASTG 6 cut(s) 169, 307, 508, 922, 969, 1074
TseFI GTSAC 2 cut(s) 194, 538
TseI GCWGC 3 cut(s) 101, 231, 250
Tsp45I GTSAC 2 cut(s) 194, 538
TspDTI ATGAA 2 cut(s) 440, 1038
TspRI CASTG 6 cut(s) 169, 307, 508, 922, 969, 1074
Tth111I GACNNNGTC 1 cut(s) 554
Van91I CCANNNNNTGG 4 cut(s) 175, 517, 740, 798
Vha464I CTTAAG 1 cut(s) 886
VpaK11BI GGWCC 1 cut(s) 803
XceI RCATGY 1 cut(s) 1003
XhoI CTCGAG 1 cut(s) 924
XmiI GTMKAC 1 cut(s) 952
ZraI GACGTC 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.